Wall clock time and date at job start Wed Apr 1 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48494 * 109.47171 * 269.99361 * 3 2 1 5 5 H 1.48496 * 109.47467 * 29.99809 * 3 2 1 6 6 H 1.48501 * 109.46708 * 149.99901 * 3 2 1 7 7 C 1.38652 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00161 * 180.02562 * 7 2 1 9 9 O 1.34800 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99922 * 174.70517 * 9 7 2 11 11 C 1.38929 * 119.99246 * 7.42814 * 10 9 7 12 12 C 1.37973 * 120.00842 * 180.02562 * 11 10 9 13 13 C 1.38997 * 119.98963 * 359.97438 * 12 11 10 14 14 N 1.39746 * 120.00512 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99840 * 143.75528 * 14 13 12 16 16 O 1.21387 * 119.99764 * 0.97483 * 15 14 13 17 17 C 1.49321 * 119.99927 * 180.97256 * 15 14 13 18 18 O 1.21366 * 120.00021 * 359.97438 * 17 15 14 19 19 N 1.34770 * 119.99644 * 180.02562 * 17 15 14 20 20 C 1.46501 * 119.99485 * 179.97438 * 19 17 15 21 21 C 1.53003 * 109.46748 * 184.63237 * 20 19 17 22 22 C 1.50697 * 115.55441 * 303.09828 * 21 20 19 23 23 O 1.20830 * 120.00063 * 125.68272 * 22 21 20 24 24 O 1.34234 * 120.00144 * 305.69136 * 22 21 20 25 25 C 1.53002 * 117.49654 * 157.43101 * 21 20 19 26 26 C 1.53005 * 117.49972 * 88.77395 * 21 20 19 27 27 C 1.38999 * 119.98689 * 0.26957 * 13 12 11 28 28 C 1.37963 * 119.99182 * 359.49693 * 27 13 12 29 29 H 0.96997 * 119.99575 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.00048 * 359.97438 * 11 10 9 31 31 H 1.07996 * 120.00816 * 179.97438 * 12 11 10 32 32 H 0.96997 * 120.00019 * 323.48381 * 14 13 12 33 33 H 0.96999 * 120.00506 * 359.97438 * 19 17 15 34 34 H 1.09000 * 109.47460 * 304.63349 * 20 19 17 35 35 H 1.09003 * 109.47221 * 64.63543 * 20 19 17 36 36 H 0.96700 * 116.99685 * 179.97438 * 24 22 21 37 37 H 1.09000 * 117.50186 * 0.02562 * 25 21 20 38 38 H 1.09004 * 117.49818 * 145.01754 * 25 21 20 39 39 H 1.08998 * 117.49652 * 214.97824 * 26 21 20 40 40 H 1.09002 * 117.49633 * 359.97358 * 26 21 20 41 41 H 1.08004 * 119.99889 * 179.72917 * 27 13 12 42 42 H 1.08003 * 120.00045 * 180.23109 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3349 -2.3682 0.0005 10 6 2.0698 -3.5042 -0.1105 11 6 3.4568 -3.4415 -0.0622 12 6 4.2041 -4.5958 -0.1756 13 6 3.5690 -5.8215 -0.3377 14 7 4.3256 -6.9907 -0.4531 15 6 3.8797 -8.1387 0.0945 16 8 2.8126 -8.1610 0.6727 17 6 4.6983 -9.3831 -0.0100 18 8 5.7650 -9.3610 -0.5885 19 7 4.2522 -10.5311 0.5371 20 6 5.0551 -11.7521 0.4340 21 6 4.2765 -12.9264 1.0307 22 6 3.8384 -12.7554 2.4624 23 8 2.6747 -12.8905 2.7583 24 8 4.7409 -12.4529 3.4089 25 6 4.6616 -14.3347 0.5731 26 6 3.3494 -13.7068 0.0966 27 6 2.1814 -5.8833 -0.3911 28 6 1.4347 -4.7292 -0.2728 29 1 -0.4849 0.8401 -0.0004 30 1 3.9503 -2.4891 0.0633 31 1 5.2823 -4.5470 -0.1385 32 1 5.1697 -6.9770 -0.9307 33 1 3.3995 -10.5490 0.9992 34 1 5.2734 -11.9561 -0.6142 35 1 5.9889 -11.6202 0.9806 36 1 4.4122 -12.3529 4.3128 37 1 5.4699 -14.4247 -0.1526 38 1 4.5978 -15.1375 1.3076 39 1 2.4228 -14.0968 0.5178 40 1 3.2939 -13.3834 -0.9429 41 1 1.6879 -6.8350 -0.5214 42 1 0.3564 -4.7775 -0.3105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:51 Heat of formation + Delta-G solvation = -122.065919 kcal Electronic energy + Delta-G solvation = -28858.184544 eV Core-core repulsion = 24384.659737 eV Total energy + Delta-G solvation = -4473.524807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28894 -40.74411 -39.36219 -38.51173 -37.89320 -36.63815 -36.52764 -34.89470 -33.85922 -32.23501 -30.30071 -28.87944 -27.99217 -25.66915 -25.28512 -23.99211 -23.19683 -22.31677 -21.31457 -20.71230 -20.19880 -19.02455 -18.34004 -18.04039 -17.60447 -17.19867 -16.76076 -16.37915 -16.13136 -15.97940 -15.50361 -15.02795 -14.68065 -14.61251 -14.50887 -14.20615 -14.01038 -13.67581 -13.56725 -13.20577 -12.88247 -12.85498 -12.58319 -12.23790 -12.08293 -11.97921 -11.77706 -11.61703 -11.55429 -11.44168 -11.15594 -11.09057 -10.94052 -10.76049 -10.48758 -9.79113 -9.65831 -9.62898 -9.33065 -8.77866 -8.28360 -7.03881 -6.49103 -4.07005 1.19197 1.54789 2.04322 2.12974 2.27009 2.38311 2.95234 3.09349 3.11596 3.16515 3.18321 3.53010 3.77677 3.93449 3.99058 4.12798 4.36498 4.51807 4.53775 4.86558 4.93964 5.04759 5.06512 5.23172 5.24062 5.25908 5.42528 5.50331 5.69228 5.75328 5.97029 6.01676 6.12239 6.15932 6.63945 6.71272 6.76940 6.90390 7.04526 7.15958 7.29481 7.36782 7.42211 7.61008 7.68099 7.94985 8.05322 8.95926 9.64958 10.68457 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.001758 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.402889 B =15919.293445 C =16280.083192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.151 3.849 11 C -0.220 4.220 12 C -0.080 4.080 13 C 0.022 3.978 14 N -0.623 5.623 15 C 0.495 3.505 16 O -0.508 6.508 17 C 0.516 3.484 18 O -0.519 6.519 19 N -0.705 5.705 20 C 0.163 3.837 21 C -0.163 4.163 22 C 0.513 3.487 23 O -0.503 6.503 24 O -0.507 6.507 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.061 4.061 28 C -0.179 4.179 29 H 0.271 0.729 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.414 0.586 33 H 0.414 0.586 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.415 0.585 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -26.413 0.853 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.097 3.903 11 C -0.240 4.240 12 C -0.100 4.100 13 C -0.070 4.070 14 N -0.268 5.268 15 C 0.276 3.724 16 O -0.383 6.383 17 C 0.297 3.703 18 O -0.394 6.394 19 N -0.359 5.359 20 C 0.040 3.960 21 C -0.165 4.165 22 C 0.354 3.646 23 O -0.390 6.390 24 O -0.319 6.319 25 C -0.171 4.171 26 C -0.173 4.173 27 C -0.081 4.081 28 C -0.199 4.199 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.250 0.750 33 H 0.250 0.750 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.275 0.725 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.308 -26.284 0.572 28.619 hybrid contribution 0.351 0.909 0.756 1.234 sum 11.658 -25.375 1.328 27.957 Atomic orbital electron populations 1.70042 1.05985 1.27800 1.45542 1.25317 0.95866 0.98909 0.96451 0.85692 0.78918 0.79971 0.78740 1.19834 1.20237 1.19161 1.21341 0.91830 0.80771 1.52917 0.88953 1.83977 1.34375 1.11451 1.77776 1.19446 0.90229 0.88157 0.92472 1.20983 0.93674 0.98508 1.10834 1.20520 0.98699 0.90972 0.99773 1.17213 0.90753 0.84397 1.14638 1.42847 1.24407 1.07021 1.52575 1.19946 0.86819 0.84779 0.80811 1.90803 1.21614 1.84743 1.41141 1.20155 0.86126 0.84668 0.79400 1.90769 1.21922 1.85404 1.41334 1.45713 1.24825 1.08377 1.56975 1.20888 0.93246 0.80069 1.01834 1.21155 1.08750 0.96827 0.89740 1.22034 0.83243 0.72278 0.87007 1.90778 1.19383 1.46306 1.82508 1.84504 1.43410 1.81898 1.22099 1.23168 0.99886 0.90994 1.03080 1.23295 0.95313 0.99626 0.99076 1.20636 0.91683 0.97831 0.97979 1.20129 0.99825 0.89872 1.10059 0.91919 0.84906 0.86822 0.74970 0.74951 0.89039 0.89281 0.72531 0.86480 0.87407 0.86823 0.86594 0.85656 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.76 9.48 30.89 0.29 -10.47 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 9 O -0.17 -4.87 9.75 0.11 0.00 -4.87 16 10 C 0.15 3.62 6.64 -39.06 -0.26 3.36 16 11 C -0.22 -4.64 9.15 -39.42 -0.36 -5.00 16 12 C -0.08 -1.42 9.96 -39.40 -0.39 -1.81 16 13 C 0.02 0.39 6.25 -83.69 -0.52 -0.13 16 14 N -0.62 -9.05 5.32 -10.26 -0.05 -9.11 16 15 C 0.50 7.20 7.69 -11.64 -0.09 7.11 16 16 O -0.51 -8.63 14.12 5.46 0.08 -8.56 16 17 C 0.52 6.26 7.88 -11.65 -0.09 6.17 16 18 O -0.52 -6.88 16.47 5.48 0.09 -6.79 16 19 N -0.70 -6.82 5.42 -60.77 -0.33 -7.15 16 20 C 0.16 1.14 5.54 -4.04 -0.02 1.12 16 21 C -0.16 -1.00 2.19 -155.66 -0.34 -1.34 16 22 C 0.51 4.17 7.02 36.00 0.25 4.42 16 23 O -0.50 -5.61 17.21 -18.75 -0.32 -5.94 16 24 O -0.51 -3.23 13.41 -39.27 -0.53 -3.75 16 25 C -0.13 -0.48 9.96 -26.69 -0.27 -0.75 16 26 C -0.14 -0.67 9.74 -26.69 -0.26 -0.93 16 27 C -0.06 -1.18 8.66 -39.40 -0.34 -1.52 16 28 C -0.18 -3.85 9.98 -39.42 -0.39 -4.25 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.13 2.76 5.65 -52.49 -0.30 2.46 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.41 5.04 8.29 -40.82 -0.34 4.70 16 33 H 0.41 4.19 7.50 -40.82 -0.31 3.88 16 34 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.42 1.10 9.10 45.56 0.41 1.52 16 37 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.65 7.81 -51.93 -0.41 0.25 16 40 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.13 2.30 6.45 -52.48 -0.34 1.96 16 42 H 0.12 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -35.06 377.01 -6.18 -41.23 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -3.64 Total: 11.31 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.89 Total: -3.05 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.37 Total: -40.42 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.68 Total: -29.91 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.06 -6.18 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.834 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds