Wall clock time and date at job start Wed Apr 1 2020 05:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99702 * 3 2 1 5 5 H 1.48500 * 109.47443 * 30.00044 * 3 2 1 6 6 H 1.48503 * 109.47014 * 150.00015 * 3 2 1 7 7 C 1.37871 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00106 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 180.27451 * 7 2 1 10 10 C 1.52995 * 109.47350 * 179.72518 * 9 7 2 11 11 O 1.42904 * 109.47441 * 180.02562 * 10 9 7 12 12 C 1.35897 * 116.99895 * 180.02562 * 11 10 9 13 13 C 1.38799 * 120.02417 * 0.02562 * 12 11 10 14 14 C 1.38168 * 120.08554 * 179.97438 * 13 12 11 15 15 C 1.38165 * 120.12759 * 0.02562 * 14 13 12 16 16 C 1.38888 * 120.03661 * 0.02562 * 15 14 13 17 17 N 1.39922 * 120.04287 * 179.97438 * 16 15 14 18 18 C 1.34781 * 119.99932 * 324.90932 * 17 16 15 19 19 O 1.21282 * 120.00161 * 4.61342 * 18 17 16 20 20 C 1.50699 * 119.99901 * 184.61995 * 18 17 16 21 21 H 1.08998 * 110.85872 * 307.34574 * 20 18 17 22 22 C 1.54733 * 110.97524 * 71.18411 * 20 18 17 23 23 C 1.51695 * 102.55248 * 142.33258 * 22 20 18 24 24 C 1.47467 * 125.86769 * 164.57502 * 23 22 20 25 25 O 1.21464 * 120.00165 * 0.02562 * 24 23 22 26 26 O 1.34760 * 119.99731 * 180.02562 * 24 23 22 27 27 N 1.29066 * 108.26414 * 344.61208 * 23 22 20 28 28 O 1.41389 * 112.87775 * 359.67836 * 27 23 22 29 29 C 1.38586 * 120.01614 * 179.72236 * 12 11 10 30 30 H 0.97001 * 120.00153 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47437 * 299.72874 * 9 7 2 32 32 H 1.09004 * 109.46944 * 59.72526 * 9 7 2 33 33 H 1.09002 * 109.47419 * 299.99941 * 10 9 7 34 34 H 1.09004 * 109.47090 * 60.00098 * 10 9 7 35 35 H 1.08003 * 119.95573 * 359.97438 * 13 12 11 36 36 H 1.08007 * 119.93856 * 180.02562 * 14 13 12 37 37 H 1.08004 * 119.98305 * 179.97438 * 15 14 13 38 38 H 0.96996 * 119.99972 * 144.90173 * 17 16 15 39 39 H 1.09000 * 110.79510 * 260.59579 * 22 20 18 40 40 H 1.08996 * 110.79371 * 24.06958 * 22 20 18 41 41 H 0.96702 * 116.99412 * 180.02562 * 26 24 23 42 42 H 1.08003 * 120.06539 * 0.02562 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0068 10 6 4.0215 -2.6364 0.0130 11 8 5.4505 -2.6365 0.0195 12 6 6.0674 -3.8473 0.0251 13 6 5.3119 -5.0117 0.0237 14 6 5.9377 -6.2435 0.0288 15 6 7.3172 -6.3204 0.0358 16 6 8.0783 -5.1586 0.0383 17 7 9.4753 -5.2363 0.0459 18 6 10.0915 -6.2265 0.7217 19 8 9.4357 -7.0974 1.2531 20 6 11.5953 -6.2513 0.8171 21 1 12.0481 -6.1801 -0.1719 22 6 12.1100 -5.1252 1.7451 23 6 13.2686 -5.7924 2.4617 24 6 14.3231 -5.1028 3.2280 25 8 14.3096 -3.8922 3.3258 26 8 15.3017 -5.8158 3.8196 27 7 13.1733 -7.0674 2.2850 28 8 12.0492 -7.4322 1.5089 29 6 7.4513 -3.9203 0.0258 30 1 -0.4850 0.8400 -0.0004 31 1 3.8785 -0.6827 -0.8830 32 1 3.8711 -0.6776 0.8968 33 1 3.6545 -3.1478 0.9029 34 1 3.6618 -3.1528 -0.8770 35 1 4.2333 -4.9547 0.0187 36 1 5.3475 -7.1480 0.0273 37 1 7.8040 -7.2845 0.0402 38 1 10.0004 -4.5778 -0.4351 39 1 12.4557 -4.2713 1.1624 40 1 11.3383 -4.8246 2.4536 41 1 15.9705 -5.3196 4.3111 42 1 8.0409 -3.0154 0.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:39 Heat of formation + Delta-G solvation = -126.067439 kcal Electronic energy + Delta-G solvation = -28465.426087 eV Core-core repulsion = 23991.727761 eV Total energy + Delta-G solvation = -4473.698326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.39726 -41.56031 -40.96750 -40.25566 -38.39182 -37.38281 -35.92391 -35.35446 -34.56165 -32.93933 -32.72441 -31.16262 -30.04760 -27.19010 -26.64054 -26.05548 -23.85623 -23.73930 -22.36623 -21.66041 -21.56581 -19.77348 -19.39439 -19.16663 -18.75960 -18.49560 -17.35063 -17.17782 -17.05576 -17.01526 -16.85660 -16.83552 -16.61623 -16.13921 -15.80320 -15.32774 -14.85472 -14.63157 -14.60411 -14.49071 -14.46879 -14.27646 -14.06647 -13.50757 -13.32064 -13.25245 -12.95181 -12.79557 -12.62106 -12.47250 -12.32769 -12.22246 -12.10695 -11.77381 -11.69348 -11.54582 -11.41743 -11.24362 -10.82986 -10.80524 -9.52618 -9.07359 -8.33918 -6.40985 -0.57127 0.12096 0.44365 0.92329 1.15843 1.37284 1.39069 1.42850 1.48371 1.51383 2.06208 2.34189 2.41398 2.74103 2.83427 3.01297 3.03680 3.30771 3.54506 3.72263 3.86120 4.13152 4.14203 4.17267 4.22638 4.24314 4.35004 4.36835 4.47344 4.51393 4.62387 4.70869 5.09678 5.16159 5.18528 5.20365 5.32136 5.36182 5.48783 5.53090 5.61250 5.82452 6.16838 6.20387 6.47019 6.65286 6.69130 6.84952 7.24321 8.81764 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.001766 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.545970 B =15854.414732 C =17321.767104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.538 4.538 8 H 0.041 0.959 9 C -0.006 4.006 10 C 0.086 3.914 11 O -0.328 6.328 12 C 0.132 3.868 13 C -0.230 4.230 14 C -0.063 4.063 15 C -0.171 4.171 16 C 0.178 3.822 17 N -0.643 5.643 18 C 0.522 3.478 19 O -0.535 6.535 20 C 0.032 3.968 21 H 0.170 0.830 22 C -0.119 4.119 23 C 0.069 3.931 24 C 0.574 3.426 25 O -0.500 6.500 26 O -0.493 6.493 27 N -0.225 5.225 28 O -0.177 6.177 29 C -0.176 4.176 30 H 0.270 0.730 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.435 0.565 39 H 0.168 0.832 40 H 0.118 0.882 41 H 0.447 0.553 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.534 -10.854 1.285 36.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.576 4.576 8 H 0.059 0.941 9 C -0.044 4.044 10 C 0.011 3.989 11 O -0.242 6.242 12 C 0.085 3.915 13 C -0.249 4.249 14 C -0.082 4.082 15 C -0.191 4.191 16 C 0.083 3.917 17 N -0.292 5.292 18 C 0.307 3.693 19 O -0.410 6.410 20 C -0.030 4.030 21 H 0.187 0.813 22 C -0.158 4.158 23 C -0.124 4.124 24 C 0.414 3.586 25 O -0.385 6.385 26 O -0.308 6.308 27 N 0.031 4.969 28 O -0.199 6.199 29 C -0.197 4.197 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.276 0.724 39 H 0.186 0.814 40 H 0.136 0.864 41 H 0.311 0.689 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 34.170 -12.195 1.735 36.322 hybrid contribution -0.552 1.666 -0.020 1.755 sum 33.617 -10.529 1.714 35.269 Atomic orbital electron populations 1.70032 1.08185 1.28490 1.51585 1.25904 0.95624 1.03411 0.93658 0.85663 0.79469 0.78153 0.79447 1.18845 1.20717 1.17150 1.21134 0.90690 0.93846 1.51935 0.94094 1.19442 0.94196 0.92729 0.97989 1.22700 0.75765 0.99581 1.00841 1.86023 1.22781 1.27279 1.88116 1.19055 0.92597 0.84573 0.95257 1.21509 1.00884 0.92758 1.09771 1.21046 0.94283 0.97331 0.95544 1.21222 0.93836 0.98398 1.05646 1.17215 0.82896 0.92591 0.98972 1.43069 1.04242 1.30699 1.51151 1.20458 0.89672 0.81343 0.77780 1.90802 1.66836 1.37438 1.45957 1.23881 0.91695 0.85856 1.01543 0.81265 1.22955 0.93935 1.00512 0.98417 1.24988 0.96237 0.92828 0.98356 1.18923 0.79795 0.83831 0.76072 1.91018 1.74717 1.14692 1.58063 1.84605 1.37583 1.44777 1.63799 1.78722 0.99775 1.15410 1.03037 1.91461 1.41046 1.28983 1.58400 1.20130 0.91363 0.97756 1.10427 0.92150 0.95197 0.95332 0.92498 0.92134 0.85394 0.83645 0.84735 0.72401 0.81427 0.86375 0.68857 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.96 21.44 0.30 -57.53 16 2 C 0.01 0.69 5.47 84.65 0.46 1.16 16 3 Si 0.95 43.22 27.47 68.60 1.88 45.10 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 7 C -0.54 -30.36 9.66 25.60 0.25 -30.11 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 9 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 10 C 0.09 3.39 4.68 71.98 0.34 3.73 16 11 O -0.33 -11.76 10.13 -92.39 -0.94 -12.70 16 12 C 0.13 3.99 6.68 22.49 0.15 4.14 16 13 C -0.23 -6.67 9.04 22.39 0.20 -6.47 16 14 C -0.06 -1.60 10.03 22.24 0.22 -1.37 16 15 C -0.17 -4.17 8.70 22.41 0.19 -3.98 16 16 C 0.18 3.74 6.30 38.14 0.24 3.98 16 17 N -0.64 -8.04 5.34 -303.55 -1.62 -9.66 16 18 C 0.52 8.32 6.98 87.66 0.61 8.93 16 19 O -0.54 -14.16 14.02 14.98 0.21 -13.95 16 20 C 0.03 0.30 4.23 30.44 0.13 0.43 16 21 H 0.17 0.15 8.14 -2.39 -0.02 0.13 16 22 C -0.12 -0.73 6.44 30.76 0.20 -0.53 16 23 C 0.07 0.75 7.30 45.72 0.33 1.08 16 24 C 0.57 5.54 8.34 70.25 0.59 6.13 16 25 O -0.50 -6.68 17.74 19.95 0.35 -6.32 16 26 O -0.49 -2.86 13.43 -56.70 -0.76 -3.62 16 27 N -0.23 -3.68 12.51 -42.36 -0.53 -4.21 16 28 O -0.18 -3.27 11.82 -20.30 -0.24 -3.51 16 29 C -0.18 -4.14 9.90 22.49 0.22 -3.91 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.03 1.35 7.58 -2.39 -0.02 1.33 16 32 H 0.03 1.32 7.19 -2.39 -0.02 1.30 16 33 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 34 H 0.06 2.33 7.66 -2.39 -0.02 2.31 16 35 H 0.13 3.78 6.29 -2.91 -0.02 3.76 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.13 3.39 6.22 -2.91 -0.02 3.37 16 38 H 0.44 1.49 8.82 -92.71 -0.82 0.67 16 39 H 0.17 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.12 0.89 7.90 -2.39 -0.02 0.87 16 41 H 0.45 -2.03 9.11 -74.06 -0.67 -2.70 16 42 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -82.50 372.46 2.50 -80.01 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -0.44 Total: 3.35 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 4.27 Total: -16.95 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.85 Total: -71.40 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.37 Total: -40.10 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -82.50 2.50 -80.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.062 kcal (2) G-P(sol) polarization free energy of solvation -82.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds