Wall clock time and date at job start Wed Apr 1 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48494 * 109.47266 * 265.67630 * 3 2 1 5 5 H 1.48501 * 109.46771 * 25.67723 * 3 2 1 6 6 H 1.48504 * 109.46982 * 145.67262 * 3 2 1 7 7 C 1.37878 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 351.91047 * 7 2 1 9 9 C 1.50701 * 120.00164 * 171.91613 * 7 2 1 10 10 O 1.42899 * 110.88438 * 331.55050 * 9 7 2 11 11 C 1.55154 * 111.03915 * 95.45807 * 9 7 2 12 12 C 1.54332 * 103.01909 * 153.39741 * 11 9 7 13 13 N 1.47015 * 107.26893 * 338.13420 * 12 11 9 14 14 C 1.34771 * 125.65042 * 178.84687 * 13 12 11 15 15 O 1.21358 * 119.99924 * 179.69661 * 14 13 12 16 16 C 1.49368 * 120.00146 * 359.70327 * 14 13 12 17 17 O 1.21358 * 119.99930 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00146 * 180.02562 * 16 14 13 19 19 C 1.39246 * 120.00078 * 185.24660 * 18 16 14 20 20 C 1.39196 * 119.92366 * 33.49382 * 19 18 16 21 21 C 1.37645 * 120.07071 * 180.02562 * 20 19 18 22 22 C 1.39808 * 119.92611 * 0.02562 * 21 20 19 23 23 C 1.47474 * 120.07332 * 180.02562 * 22 21 20 24 24 O 1.21503 * 119.99790 * 0.02562 * 23 22 21 25 25 O 1.34750 * 120.00079 * 179.97438 * 23 22 21 26 26 C 1.39816 * 119.85390 * 0.26947 * 22 21 20 27 27 C 1.37635 * 119.92252 * 359.47586 * 26 22 21 28 28 C 1.47425 * 108.70263 * 358.59038 * 13 12 11 29 29 H 0.97005 * 120.00382 * 359.97438 * 1 2 3 30 30 H 0.96700 * 114.00056 * 301.28325 * 10 9 7 31 31 H 1.09007 * 110.71853 * 271.95563 * 11 9 7 32 32 H 1.09002 * 110.72290 * 35.22483 * 11 9 7 33 33 H 1.09007 * 109.98740 * 218.66479 * 12 11 9 34 34 H 1.09003 * 109.77892 * 97.49831 * 12 11 9 35 35 H 0.97002 * 120.00520 * 5.23929 * 18 16 14 36 36 H 1.07993 * 119.96656 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.03584 * 180.02562 * 21 20 19 38 38 H 0.96702 * 117.00077 * 180.02562 * 25 23 22 39 39 H 1.08002 * 120.03352 * 179.73003 * 26 22 21 40 40 H 1.08004 * 119.96243 * 180.25246 * 27 26 22 41 41 H 1.09002 * 110.36668 * 143.18873 * 28 13 12 42 42 H 1.08994 * 110.36980 * 265.40440 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5880 1.9937 -1.3960 5 1 1.4038 2.6773 0.6067 6 1 3.4979 1.4683 0.7896 7 6 2.0045 -1.1940 -0.0005 8 1 1.4726 -2.1248 0.1307 9 6 3.5003 -1.2004 -0.1841 10 8 3.9234 -0.0760 -0.9578 11 6 4.2293 -1.2395 1.1850 12 6 5.5745 -1.9144 0.8434 13 7 5.3791 -2.6720 -0.4013 14 6 6.3252 -3.3851 -1.0436 15 8 6.0487 -3.9782 -2.0656 16 6 7.7142 -3.4455 -0.4975 17 8 7.9908 -2.8521 0.5243 18 7 8.6605 -4.1582 -1.1402 19 6 9.9249 -4.3050 -0.5756 20 6 10.0637 -4.3768 0.8075 21 6 11.3122 -4.5214 1.3688 22 6 12.4416 -4.5956 0.5481 23 6 13.7807 -4.7510 1.1460 24 8 13.9033 -4.8152 2.3531 25 8 14.8681 -4.8229 0.3535 26 6 12.2991 -4.5169 -0.8406 27 6 11.0474 -4.3776 -1.3956 28 6 3.9751 -2.5274 -0.8272 29 1 -0.4851 0.8401 0.0004 30 1 3.5250 -0.0319 -1.8379 31 1 4.3872 -0.2307 1.5667 32 1 3.6711 -1.8413 1.9022 33 1 5.8666 -2.5907 1.6469 34 1 6.3422 -1.1544 0.6983 35 1 8.4608 -4.5690 -1.9959 36 1 9.1911 -4.3182 1.4410 37 1 11.4192 -4.5774 2.4421 38 1 15.7244 -4.9251 0.7912 39 1 13.1700 -4.5695 -1.4771 40 1 10.9362 -4.3209 -2.4684 41 1 3.9127 -2.4660 -1.9137 42 1 3.3794 -3.3632 -0.4603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:35 Heat of formation + Delta-G solvation = -160.819814 kcal Electronic energy + Delta-G solvation = -29772.429452 eV Core-core repulsion = 25297.224150 eV Total energy + Delta-G solvation = -4475.205302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37663 -40.61557 -39.57859 -38.39513 -37.71292 -36.47635 -35.55995 -34.72309 -32.45698 -31.52651 -30.70847 -30.56987 -28.58602 -26.55267 -25.16735 -23.78002 -23.32233 -22.21869 -21.37466 -20.19138 -19.89421 -18.59711 -18.30831 -17.77451 -17.61130 -17.39347 -16.54114 -16.25289 -15.98648 -15.47901 -15.34646 -15.10417 -14.92905 -14.69401 -14.48791 -13.95623 -13.90943 -13.70496 -13.44891 -13.16739 -12.96844 -12.80695 -12.68708 -12.16283 -11.99893 -11.90027 -11.74752 -11.65658 -11.44510 -11.06044 -11.02456 -10.86060 -10.59063 -10.42323 -10.34934 -9.64598 -9.43699 -9.38892 -8.80997 -8.70684 -8.63313 -8.35046 -6.29371 -4.41484 0.14591 0.93457 1.30394 2.06036 2.20193 2.62621 3.08733 3.36672 3.37813 3.40538 3.47382 3.63549 4.17820 4.34883 4.39526 4.46700 4.67083 4.80794 4.90598 4.99982 5.02417 5.07285 5.27726 5.53490 5.60719 5.61542 5.62954 5.75774 5.84923 5.90299 5.94052 6.02511 6.07295 6.22587 6.33938 6.40756 6.53353 6.67856 6.72131 6.93365 7.28714 7.37926 7.49263 7.54834 7.93850 7.99814 8.51441 8.70490 9.30653 10.79256 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.002093 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.381663 B =13376.857671 C =13815.162367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.951 3.049 4 H -0.293 1.293 5 H -0.325 1.325 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.220 3.780 10 O -0.558 6.558 11 C -0.124 4.124 12 C 0.104 3.896 13 N -0.570 5.570 14 C 0.514 3.486 15 O -0.533 6.533 16 C 0.512 3.488 17 O -0.485 6.485 18 N -0.652 5.652 19 C 0.192 3.808 20 C -0.137 4.137 21 C -0.028 4.028 22 C -0.153 4.153 23 C 0.530 3.470 24 O -0.516 6.516 25 O -0.514 6.514 26 C -0.037 4.037 27 C -0.160 4.160 28 C 0.087 3.913 29 H 0.268 0.732 30 H 0.374 0.626 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.426 0.574 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.414 0.586 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.077 0.923 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.271 -9.603 -2.119 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.787 3.213 4 H -0.221 1.221 5 H -0.257 1.257 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.179 3.821 10 O -0.366 6.366 11 C -0.163 4.163 12 C -0.018 4.018 13 N -0.302 5.302 14 C 0.296 3.704 15 O -0.412 6.412 16 C 0.295 3.705 17 O -0.356 6.356 18 N -0.299 5.299 19 C 0.096 3.904 20 C -0.157 4.157 21 C -0.047 4.047 22 C -0.155 4.155 23 C 0.375 3.625 24 O -0.406 6.406 25 O -0.326 6.326 26 C -0.056 4.056 27 C -0.180 4.180 28 C -0.034 4.034 29 H 0.078 0.922 30 H 0.223 0.777 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.265 0.735 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.273 0.727 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.095 0.905 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 24.081 -9.282 -1.280 25.840 hybrid contribution 0.517 0.448 -0.629 0.929 sum 24.598 -8.834 -1.909 26.206 Atomic orbital electron populations 1.69953 1.06823 1.28013 1.46876 1.25139 0.94960 1.00508 0.92640 0.85651 0.77681 0.79940 0.78042 1.22123 1.25680 1.19732 1.21069 0.88433 0.95740 1.54046 0.89847 1.20257 0.94093 0.80460 0.87243 1.86146 1.72057 1.47668 1.30741 1.23044 0.93067 1.01277 0.98877 1.22345 0.99665 0.95102 0.84717 1.48467 1.10918 1.45346 1.25448 1.19246 0.84822 0.81503 0.84851 1.90760 1.81344 1.45240 1.23820 1.20575 0.86616 0.78826 0.84516 1.90792 1.81123 1.40805 1.22898 1.43205 1.09725 1.51690 1.25237 1.18053 0.84294 0.95225 0.92799 1.21160 0.98612 1.02431 0.93471 1.21141 0.90160 0.92814 1.00599 1.19012 0.90055 1.12260 0.94202 1.20815 0.85114 0.72139 0.84437 1.90908 1.87066 1.46770 1.15835 1.84557 1.18576 1.85284 1.44174 1.21226 0.97429 0.93412 0.93487 1.20928 0.90803 1.05931 1.00353 1.23392 0.77877 1.01375 1.00800 0.92219 0.77718 0.89873 0.89429 0.91203 0.90829 0.73498 0.83551 0.83928 0.72716 0.83867 0.84326 0.90452 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 13.96 55.43 0.77 -24.33 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.95 22.43 24.63 -169.99 -4.19 18.24 16 4 H -0.29 -6.74 7.02 56.52 0.40 -6.34 16 5 H -0.33 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.33 5.72 56.52 0.32 -6.00 16 7 C -0.56 -13.89 8.86 -34.44 -0.31 -14.20 16 8 H 0.08 2.26 8.01 -52.49 -0.42 1.84 16 9 C 0.22 4.59 0.71 -89.62 -0.06 4.52 16 10 O -0.56 -11.62 8.76 -35.23 -0.31 -11.93 16 11 C -0.12 -2.33 5.97 -24.89 -0.15 -2.48 16 12 C 0.10 1.72 5.49 -3.06 -0.02 1.70 16 13 N -0.57 -9.77 3.33 -171.05 -0.57 -10.34 16 14 C 0.51 8.21 7.91 -11.63 -0.09 8.12 16 15 O -0.53 -9.22 16.74 5.49 0.09 -9.12 16 16 C 0.51 6.95 7.58 -11.63 -0.09 6.86 16 17 O -0.48 -7.22 11.79 5.49 0.06 -7.15 16 18 N -0.65 -6.80 5.30 -10.28 -0.05 -6.86 16 19 C 0.19 1.88 6.27 -83.78 -0.53 1.36 16 20 C -0.14 -1.43 8.62 -39.44 -0.34 -1.77 16 21 C -0.03 -0.28 9.58 -39.21 -0.38 -0.65 16 22 C -0.15 -1.39 5.88 -104.96 -0.62 -2.01 16 23 C 0.53 4.86 8.26 34.49 0.29 5.15 16 24 O -0.52 -6.25 17.12 -19.27 -0.33 -6.58 16 25 O -0.51 -3.06 12.67 -40.63 -0.51 -3.57 16 26 C -0.04 -0.27 9.60 -39.21 -0.38 -0.65 16 27 C -0.16 -1.21 9.94 -39.45 -0.39 -1.60 16 28 C 0.09 1.62 6.09 -2.53 -0.02 1.61 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.37 7.05 8.45 45.56 0.38 7.43 16 31 H 0.08 1.61 6.89 -51.93 -0.36 1.26 16 32 H 0.09 1.59 8.03 -51.93 -0.42 1.17 16 33 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 34 H 0.07 1.24 7.57 -51.93 -0.39 0.85 16 35 H 0.43 3.67 8.29 -40.82 -0.34 3.33 16 36 H 0.15 1.65 6.40 -52.49 -0.34 1.31 16 37 H 0.14 1.32 7.64 -52.49 -0.40 0.92 16 38 H 0.41 0.69 9.11 45.56 0.42 1.10 16 39 H 0.14 0.76 7.60 -52.49 -0.40 0.36 16 40 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 41 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 42 H 0.08 1.53 8.00 -51.93 -0.42 1.12 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -32.83 358.50 -5.94 -38.77 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -3.14 Total: 9.68 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -3.17 Total: 7.80 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.15 Total: -41.52 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.00 Total: -38.36 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.19 Total: 18.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.83 -5.94 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.053 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds