Wall clock time and date at job start Wed Apr 1 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86794 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47247 * 299.99931 * 3 2 1 6 6 H 1.48503 * 109.47295 * 60.00040 * 3 2 1 7 7 C 1.38654 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99974 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99983 * 185.03534 * 9 7 2 11 11 C 1.38961 * 120.03196 * 174.66217 * 10 9 7 12 12 C 1.38134 * 120.08407 * 180.02562 * 11 10 9 13 13 C 1.38184 * 120.14586 * 0.02562 * 12 11 10 14 14 C 1.38986 * 120.05758 * 0.27625 * 13 12 11 15 15 N 1.39728 * 120.03911 * 179.69863 * 14 13 12 16 16 C 1.34778 * 119.99725 * 35.13938 * 15 14 13 17 17 O 1.21377 * 120.00357 * 355.49388 * 16 15 14 18 18 C 1.49354 * 119.99538 * 175.49178 * 16 15 14 19 19 O 1.21364 * 120.00277 * 0.02562 * 18 16 15 20 20 N 1.34778 * 119.99962 * 179.97438 * 18 16 15 21 21 C 1.47424 * 125.64649 * 0.02562 * 20 18 16 22 22 C 1.54911 * 104.82954 * 155.83272 * 21 20 18 23 23 C 1.55159 * 101.58075 * 37.01427 * 22 21 20 24 24 C 1.47022 * 125.64665 * 179.71522 * 20 18 16 25 25 H 1.08995 * 109.88540 * 300.51083 * 24 20 18 26 26 C 1.50700 * 109.88231 * 61.68366 * 24 20 18 27 27 O 1.20833 * 120.00132 * 18.54018 * 26 24 20 28 28 O 1.34233 * 119.99866 * 198.54358 * 26 24 20 29 29 C 1.38715 * 120.02932 * 354.68961 * 10 9 7 30 30 H 0.97009 * 119.99158 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.95571 * 0.05058 * 11 10 9 32 32 H 1.07998 * 119.93004 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.97217 * 180.02562 * 13 12 11 34 34 H 0.97000 * 119.99595 * 215.14005 * 15 14 13 35 35 H 1.08998 * 110.36721 * 274.67545 * 21 20 18 36 36 H 1.09002 * 110.36776 * 36.88860 * 21 20 18 37 37 H 1.09007 * 111.00348 * 155.08563 * 22 21 20 38 38 H 1.08998 * 111.00641 * 278.89992 * 22 21 20 39 39 H 1.09001 * 110.72391 * 82.85951 * 23 22 21 40 40 H 1.08999 * 110.71784 * 205.95454 * 23 22 21 41 41 H 0.96700 * 116.99543 * 180.02562 * 28 26 24 42 42 H 1.07999 * 120.07297 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3345 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1051 11 6 1.4351 -4.7353 0.2232 12 6 2.1822 -5.8921 0.3313 13 6 3.5627 -5.8301 0.3229 14 6 4.2036 -4.6019 0.2114 15 7 5.5995 -4.5390 0.2092 16 6 6.3173 -5.5198 -0.3731 17 8 5.7560 -6.4973 -0.8233 18 6 7.8035 -5.4039 -0.4645 19 8 8.3649 -4.4267 -0.0140 20 7 8.5215 -6.3849 -1.0464 21 6 7.9710 -7.6209 -1.6317 22 6 9.0294 -8.0745 -2.6680 23 6 10.3514 -7.7004 -1.9471 24 6 9.9827 -6.3967 -1.2082 25 1 10.2977 -5.5340 -1.7951 26 6 10.6483 -6.3713 0.1437 27 8 10.0231 -6.6793 1.1308 28 8 11.9356 -6.0065 0.2512 29 6 3.4553 -3.4384 0.0958 30 1 -0.4849 0.8402 0.0004 31 1 0.3564 -4.7873 0.2301 32 1 1.6864 -6.8472 0.4225 33 1 4.1440 -6.7363 0.4071 34 1 6.0518 -3.7894 0.6269 35 1 7.8439 -8.3816 -0.8615 36 1 7.0197 -7.4170 -2.1232 37 1 8.9701 -9.1488 -2.8425 38 1 8.9233 -7.5227 -3.6020 39 1 10.6399 -8.4796 -1.2415 40 1 11.1478 -7.5224 -2.6698 41 1 12.3190 -6.0060 1.1390 42 1 3.9508 -2.4832 0.0041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611291065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:31 Heat of formation + Delta-G solvation = -134.557440 kcal Electronic energy + Delta-G solvation = -30056.282052 eV Core-core repulsion = 25582.215573 eV Total energy + Delta-G solvation = -4474.066480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53054 -40.50056 -39.34515 -38.50093 -37.81192 -36.53884 -36.38647 -34.41805 -32.26722 -32.18857 -30.42854 -29.56383 -28.73833 -25.99104 -25.30269 -24.30935 -22.65761 -22.03713 -21.83660 -20.76031 -19.80373 -18.72709 -18.35312 -18.04804 -17.36382 -17.16249 -17.09862 -16.10893 -15.79116 -15.66100 -15.40379 -15.05265 -14.69474 -14.44630 -14.18091 -13.97076 -13.80114 -13.70284 -13.61235 -13.54558 -13.04979 -12.84373 -12.47366 -12.41580 -12.09997 -11.86502 -11.78072 -11.61863 -11.50140 -11.39638 -11.10167 -10.99966 -10.89352 -10.82406 -10.44360 -9.95031 -9.58590 -9.42423 -9.28068 -8.84257 -7.84972 -7.24333 -6.47551 -4.07381 1.12316 1.69290 1.90021 2.14547 2.34896 2.58017 3.10675 3.13146 3.16966 3.18543 3.31397 3.84514 3.94782 3.99994 4.25779 4.37811 4.53477 4.60730 4.80381 4.87017 5.06383 5.14270 5.23321 5.28245 5.29873 5.44506 5.61849 5.65985 5.68951 5.92883 5.96609 6.10460 6.13278 6.18059 6.53350 6.66329 6.83700 6.86676 7.05257 7.22515 7.29566 7.37369 7.49297 7.59944 7.69915 7.95030 7.99100 8.98019 9.66448 10.70268 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.002495 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.135049 B =11217.672914 C =12423.575024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.193 4.193 12 C -0.064 4.064 13 C -0.202 4.202 14 C 0.170 3.830 15 N -0.633 5.633 16 C 0.512 3.488 17 O -0.496 6.496 18 C 0.532 3.468 19 O -0.511 6.511 20 N -0.580 5.580 21 C 0.094 3.906 22 C -0.134 4.134 23 C -0.118 4.118 24 C 0.147 3.853 25 H 0.119 0.881 26 C 0.472 3.528 27 O -0.498 6.498 28 O -0.514 6.514 29 C -0.249 4.249 30 H 0.270 0.730 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.419 0.581 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.412 0.588 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.880 -15.426 -4.369 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.112 3.888 11 C -0.213 4.213 12 C -0.083 4.083 13 C -0.223 4.223 14 C 0.078 3.922 15 N -0.279 5.279 16 C 0.294 3.706 17 O -0.370 6.370 18 C 0.316 3.684 19 O -0.386 6.386 20 N -0.316 5.316 21 C -0.027 4.027 22 C -0.172 4.172 23 C -0.156 4.156 24 C 0.041 3.959 25 H 0.136 0.864 26 C 0.311 3.689 27 O -0.384 6.384 28 O -0.325 6.325 29 C -0.270 4.270 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.979 -15.376 -4.545 26.405 hybrid contribution 1.102 1.322 0.964 1.973 sum 22.081 -14.054 -3.580 26.418 Atomic orbital electron populations 1.70053 1.05945 1.27611 1.45965 1.25284 0.95846 0.98824 0.96466 0.85654 0.79167 0.80376 0.78292 1.19083 1.20112 1.20098 1.21347 0.91763 0.80792 1.53032 0.89081 1.84009 1.33950 1.11346 1.78418 1.19052 0.89263 0.88277 0.92162 1.20315 0.99867 0.90227 1.10863 1.20548 0.92972 0.96962 0.97853 1.20677 0.94471 0.96200 1.10960 1.17410 0.79790 0.94636 1.00399 1.43077 1.05819 1.24721 1.54258 1.19698 0.87193 0.84026 0.79727 1.90716 1.71343 1.29411 1.45560 1.19897 0.88117 0.82192 0.78198 1.90788 1.72080 1.30265 1.45451 1.48028 1.05003 1.20914 1.57642 1.22821 0.98835 0.84874 0.96175 1.22914 0.92812 1.02998 0.98461 1.22640 0.99506 0.93813 0.99609 1.21183 0.80797 1.03015 0.90908 0.86363 1.23642 0.80058 0.72900 0.92254 1.90757 1.64529 1.43866 1.39291 1.84490 1.27337 1.80792 1.39918 1.20853 0.93995 0.97586 1.14615 0.92021 0.86197 0.86390 0.85736 0.74403 0.90329 0.86933 0.88658 0.89601 0.89744 0.88022 0.72830 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -10.87 9.49 30.89 0.29 -10.57 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.90 9.76 0.04 0.00 -4.90 16 10 C 0.17 3.99 6.65 -39.14 -0.26 3.73 16 11 C -0.19 -4.04 9.99 -39.35 -0.39 -4.43 16 12 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 13 C -0.20 -3.77 8.69 -39.32 -0.34 -4.11 16 14 C 0.17 3.27 6.29 -83.77 -0.53 2.74 16 15 N -0.63 -10.52 5.32 -10.31 -0.05 -10.57 16 16 C 0.51 8.08 7.69 -11.63 -0.09 7.99 16 17 O -0.50 -8.08 11.21 5.47 0.06 -8.01 16 18 C 0.53 7.74 7.31 -11.63 -0.09 7.65 16 19 O -0.51 -8.37 16.28 5.49 0.09 -8.28 16 20 N -0.58 -6.56 2.75 -164.87 -0.45 -7.02 16 21 C 0.09 0.83 6.07 -2.53 -0.02 0.82 16 22 C -0.13 -0.65 7.08 -24.58 -0.17 -0.83 16 23 C -0.12 -0.57 6.46 -24.90 -0.16 -0.73 16 24 C 0.15 1.27 3.37 -68.11 -0.23 1.04 16 25 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 26 C 0.47 4.94 6.76 36.01 0.24 5.18 16 27 O -0.50 -7.12 16.89 -18.76 -0.32 -7.44 16 28 O -0.51 -3.80 13.42 -39.27 -0.53 -4.33 16 29 C -0.25 -5.40 9.09 -39.19 -0.36 -5.75 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 2.22 6.22 -52.49 -0.33 1.89 16 34 H 0.42 6.36 8.30 -40.82 -0.34 6.02 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 1.14 6.15 -51.93 -0.32 0.82 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 40 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.41 1.51 9.10 45.56 0.41 1.92 16 42 H 0.13 2.85 5.63 -52.49 -0.30 2.55 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -35.85 364.23 -6.21 -42.05 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -3.64 Total: 9.71 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.59 Total: 2.16 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.25 Total: -41.89 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.69 Total: -32.96 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.85 -6.21 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611291065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.504 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds