Wall clock time and date at job start Wed Apr 1 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86794 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47247 * 299.99931 * 3 2 1 6 6 H 1.48503 * 109.47295 * 60.00040 * 3 2 1 7 7 C 1.38654 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99974 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99983 * 185.03534 * 9 7 2 11 11 C 1.38961 * 120.03196 * 174.66217 * 10 9 7 12 12 C 1.38134 * 120.08407 * 180.02562 * 11 10 9 13 13 C 1.38184 * 120.14586 * 0.02562 * 12 11 10 14 14 C 1.38986 * 120.05758 * 0.27625 * 13 12 11 15 15 N 1.39728 * 120.03911 * 179.69863 * 14 13 12 16 16 C 1.34778 * 119.99725 * 35.13938 * 15 14 13 17 17 O 1.21377 * 120.00357 * 355.49388 * 16 15 14 18 18 C 1.49354 * 119.99538 * 175.49178 * 16 15 14 19 19 O 1.21364 * 120.00277 * 0.02562 * 18 16 15 20 20 N 1.34778 * 119.99962 * 179.97438 * 18 16 15 21 21 C 1.47424 * 125.64649 * 0.02562 * 20 18 16 22 22 C 1.54911 * 104.82954 * 155.83272 * 21 20 18 23 23 C 1.55159 * 101.58075 * 37.01427 * 22 21 20 24 24 C 1.47022 * 125.64665 * 179.71522 * 20 18 16 25 25 H 1.08995 * 109.88540 * 300.51083 * 24 20 18 26 26 C 1.50700 * 109.88231 * 61.68366 * 24 20 18 27 27 O 1.20833 * 120.00132 * 18.54018 * 26 24 20 28 28 O 1.34233 * 119.99866 * 198.54358 * 26 24 20 29 29 C 1.38715 * 120.02932 * 354.68961 * 10 9 7 30 30 H 0.97009 * 119.99158 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.95571 * 0.05058 * 11 10 9 32 32 H 1.07998 * 119.93004 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.97217 * 180.02562 * 13 12 11 34 34 H 0.97000 * 119.99595 * 215.14005 * 15 14 13 35 35 H 1.08998 * 110.36721 * 274.67545 * 21 20 18 36 36 H 1.09002 * 110.36776 * 36.88860 * 21 20 18 37 37 H 1.09007 * 111.00348 * 155.08563 * 22 21 20 38 38 H 1.08998 * 111.00641 * 278.89992 * 22 21 20 39 39 H 1.09001 * 110.72391 * 82.85951 * 23 22 21 40 40 H 1.08999 * 110.71784 * 205.95454 * 23 22 21 41 41 H 0.96700 * 116.99543 * 180.02562 * 28 26 24 42 42 H 1.07999 * 120.07297 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3345 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1051 11 6 1.4351 -4.7353 0.2232 12 6 2.1822 -5.8921 0.3313 13 6 3.5627 -5.8301 0.3229 14 6 4.2036 -4.6019 0.2114 15 7 5.5995 -4.5390 0.2092 16 6 6.3173 -5.5198 -0.3731 17 8 5.7560 -6.4973 -0.8233 18 6 7.8035 -5.4039 -0.4645 19 8 8.3649 -4.4267 -0.0140 20 7 8.5215 -6.3849 -1.0464 21 6 7.9710 -7.6209 -1.6317 22 6 9.0294 -8.0745 -2.6680 23 6 10.3514 -7.7004 -1.9471 24 6 9.9827 -6.3967 -1.2082 25 1 10.2977 -5.5340 -1.7951 26 6 10.6483 -6.3713 0.1437 27 8 10.0231 -6.6793 1.1308 28 8 11.9356 -6.0065 0.2512 29 6 3.4553 -3.4384 0.0958 30 1 -0.4849 0.8402 0.0004 31 1 0.3564 -4.7873 0.2301 32 1 1.6864 -6.8472 0.4225 33 1 4.1440 -6.7363 0.4071 34 1 6.0518 -3.7894 0.6269 35 1 7.8439 -8.3816 -0.8615 36 1 7.0197 -7.4170 -2.1232 37 1 8.9701 -9.1488 -2.8425 38 1 8.9233 -7.5227 -3.6020 39 1 10.6399 -8.4796 -1.2415 40 1 11.1478 -7.5224 -2.6698 41 1 12.3190 -6.0060 1.1390 42 1 3.9508 -2.4832 0.0041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611291065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:30 Heat of formation + Delta-G solvation = -161.384492 kcal Electronic energy + Delta-G solvation = -30057.445360 eV Core-core repulsion = 25582.215573 eV Total energy + Delta-G solvation = -4475.229788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52977 -41.61212 -40.71352 -39.86530 -38.72264 -38.17303 -37.16204 -35.86536 -34.25529 -32.95439 -31.19444 -31.06003 -30.39827 -27.49237 -26.81770 -25.20347 -23.70860 -23.55351 -22.73935 -21.93932 -20.97594 -19.84901 -19.55839 -19.44675 -18.75116 -18.29720 -18.04226 -17.17793 -17.10229 -16.83552 -16.63637 -16.52750 -15.99083 -15.88050 -15.64745 -15.48971 -15.09127 -14.67725 -14.61384 -14.38481 -14.29492 -14.22734 -13.61695 -13.56094 -13.30933 -13.12073 -12.99795 -12.75055 -12.64430 -12.57641 -12.44501 -12.12660 -12.11184 -11.97510 -11.59434 -11.49690 -11.36828 -10.81580 -10.70606 -10.18016 -9.46052 -8.97860 -8.48765 -6.17343 -0.13858 0.48766 0.64775 0.88021 1.08073 1.35049 1.42597 1.52548 1.72942 2.02898 2.15990 2.28073 2.78626 3.00748 3.13315 3.36580 3.45674 3.46054 3.91074 4.06096 4.07326 4.19717 4.27640 4.36030 4.39792 4.52893 4.56058 4.64210 4.73764 4.83053 4.97626 5.00539 5.08891 5.09505 5.23710 5.25090 5.30700 5.47219 5.59331 5.63023 5.76325 5.97191 5.99509 6.12383 6.37000 6.64895 6.84777 6.95964 7.73875 8.74102 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.002495 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.135049 B =11217.672914 C =12423.575024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.016 2.984 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.223 6.223 10 C 0.134 3.866 11 C -0.203 4.203 12 C -0.048 4.048 13 C -0.192 4.192 14 C 0.175 3.825 15 N -0.635 5.635 16 C 0.513 3.487 17 O -0.500 6.500 18 C 0.530 3.470 19 O -0.538 6.538 20 N -0.575 5.575 21 C 0.084 3.916 22 C -0.120 4.120 23 C -0.106 4.106 24 C 0.135 3.865 25 H 0.132 0.868 26 C 0.474 3.526 27 O -0.545 6.545 28 O -0.503 6.503 29 C -0.255 4.255 30 H 0.273 0.727 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.424 0.576 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.429 0.571 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.989 -17.433 -5.434 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.129 6.129 10 C 0.083 3.917 11 C -0.222 4.222 12 C -0.067 4.067 13 C -0.212 4.212 14 C 0.081 3.919 15 N -0.281 5.281 16 C 0.295 3.705 17 O -0.375 6.375 18 C 0.313 3.687 19 O -0.416 6.416 20 N -0.309 5.309 21 C -0.036 4.036 22 C -0.158 4.158 23 C -0.144 4.144 24 C 0.030 3.970 25 H 0.150 0.850 26 C 0.315 3.685 27 O -0.435 6.435 28 O -0.316 6.316 29 C -0.276 4.276 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.262 0.738 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.291 0.709 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 24.172 -17.464 -5.632 30.348 hybrid contribution 0.321 1.597 1.294 2.080 sum 24.493 -15.867 -4.338 29.504 Atomic orbital electron populations 1.70185 1.07912 1.28789 1.48571 1.26528 0.96826 1.02572 0.95786 0.84567 0.78201 0.75072 0.78632 1.17698 1.19258 1.19299 1.21814 0.92434 0.81396 1.53338 0.88223 1.83976 1.35433 1.12394 1.81101 1.19581 0.90363 0.88284 0.93478 1.20583 1.00543 0.90119 1.10990 1.20981 0.92717 0.97681 0.95282 1.21023 0.94931 0.96346 1.08921 1.17442 0.81059 0.94100 0.99260 1.43067 1.04818 1.25503 1.54749 1.20034 0.88060 0.83449 0.78985 1.90703 1.71807 1.29492 1.45492 1.19574 0.87410 0.82884 0.78880 1.90771 1.72167 1.31517 1.47103 1.48178 1.06493 1.20464 1.55780 1.23013 0.99799 0.83764 0.97065 1.22928 0.90907 1.04582 0.97366 1.22747 1.00283 0.91592 0.99781 1.21660 0.78871 1.05878 0.90586 0.85021 1.23986 0.80509 0.71672 0.92288 1.90745 1.65673 1.46246 1.40845 1.84455 1.25938 1.79827 1.41367 1.20841 0.93479 0.98335 1.14993 0.91750 0.85754 0.82071 0.84148 0.73755 0.90681 0.88364 0.86179 0.88492 0.89361 0.84753 0.70926 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.67 21.61 0.30 -55.53 16 2 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 3 Si 1.02 42.94 29.55 68.60 2.03 44.97 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.41 -23.93 9.49 67.92 0.64 -23.29 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.22 -13.25 9.76 -22.77 -0.22 -13.47 16 10 C 0.13 6.65 6.65 22.56 0.15 6.80 16 11 C -0.20 -8.50 9.99 22.42 0.22 -8.28 16 12 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 13 C -0.19 -6.77 8.69 22.44 0.20 -6.58 16 14 C 0.17 6.64 6.29 38.20 0.24 6.88 16 15 N -0.64 -20.90 5.32 -304.87 -1.62 -22.52 16 16 C 0.51 15.78 7.69 87.24 0.67 16.45 16 17 O -0.50 -15.62 11.21 -3.33 -0.04 -15.66 16 18 C 0.53 15.05 7.31 87.24 0.64 15.69 16 19 O -0.54 -17.51 16.28 -3.29 -0.05 -17.56 16 20 N -0.57 -12.13 2.75 -793.87 -2.19 -14.31 16 21 C 0.08 1.31 6.07 86.86 0.53 1.84 16 22 C -0.12 -0.71 7.08 31.99 0.23 -0.49 16 23 C -0.11 -0.61 6.46 31.78 0.21 -0.41 16 24 C 0.13 2.01 3.37 44.59 0.15 2.16 16 25 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 26 C 0.47 9.13 6.76 71.24 0.48 9.61 16 27 O -0.55 -15.25 16.89 21.94 0.37 -14.88 16 28 O -0.50 -6.32 13.42 -51.45 -0.69 -7.01 16 29 C -0.26 -11.32 9.09 22.52 0.20 -11.11 16 30 H 0.27 15.21 8.31 -92.70 -0.77 14.43 16 31 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 32 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.14 4.60 6.22 -2.91 -0.02 4.59 16 34 H 0.42 12.99 8.30 -92.71 -0.77 12.22 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.83 6.15 -2.39 -0.01 1.82 16 37 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.09 0.50 7.85 -2.39 -0.02 0.48 16 40 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.43 2.30 9.10 -74.06 -0.67 1.63 16 42 H 0.13 5.63 5.63 -2.91 -0.02 5.61 16 Total: -1.00 -82.52 364.23 2.81 -79.71 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.32 Total: 29.00 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.25 Total: 7.25 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.51 Total: -92.37 kcal Atomic # 8 Polarization: -67.94 SS G_CDS: -0.63 Total: -68.57 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -82.52 2.81 -79.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611291065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.672 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds