Wall clock time and date at job start Wed Apr 1 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00173 * 2 1 4 4 H 1.48507 * 109.46698 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47349 * 299.99690 * 3 2 1 6 6 H 1.48499 * 109.47259 * 59.99923 * 3 2 1 7 7 C 1.38800 * 119.99221 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99423 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00425 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99899 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47269 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99817 * 0.02562 * 11 10 9 13 13 N 1.34766 * 120.00319 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00388 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47440 * 180.72710 * 14 13 11 16 16 H 1.08999 * 112.74285 * 45.12706 * 15 14 13 17 17 C 1.53502 * 113.46570 * 274.30948 * 15 14 13 18 18 C 1.53503 * 83.34636 * 219.15290 * 17 15 14 19 19 N 1.47072 * 113.46928 * 175.87490 * 15 14 13 20 20 C 1.34773 * 136.05653 * 321.93995 * 19 15 14 21 21 O 1.21283 * 120.00377 * 355.72665 * 20 19 15 22 22 C 1.50701 * 120.00149 * 175.73269 * 20 19 15 23 23 C 1.53004 * 115.54853 * 34.32535 * 22 20 19 24 24 F 1.39898 * 109.47270 * 85.58449 * 23 22 20 25 25 F 1.39905 * 109.47069 * 205.58519 * 23 22 20 26 26 C 1.52998 * 117.50074 * 248.61894 * 22 20 19 27 27 C 1.52997 * 117.49840 * 179.97438 * 22 20 19 28 28 H 0.97008 * 119.99952 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47163 * 59.99825 * 10 9 7 30 30 H 1.08995 * 109.47002 * 300.00126 * 10 9 7 31 31 H 0.97001 * 120.00176 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47112 * 60.72122 * 14 13 11 33 33 H 1.09002 * 109.46828 * 300.72737 * 14 13 11 34 34 H 1.09001 * 114.20883 * 105.56447 * 17 15 14 35 35 H 1.08995 * 114.20831 * 332.73880 * 17 15 14 36 36 H 1.08996 * 113.46341 * 271.28982 * 18 17 15 37 37 H 1.08992 * 113.47141 * 140.84514 * 18 17 15 38 38 H 1.09000 * 109.46811 * 325.58279 * 23 22 20 39 39 H 1.09002 * 117.49353 * 359.97438 * 26 22 20 40 40 H 1.09000 * 117.50267 * 145.01808 * 26 22 20 41 41 H 1.09001 * 117.49872 * 214.97650 * 27 22 20 42 42 H 1.08993 * 117.50414 * 0.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1290 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8437 -6.3432 0.0007 14 6 2.3299 -7.7152 0.0008 15 6 3.5018 -8.6986 0.0199 16 1 4.2716 -8.4229 0.7405 17 6 4.0553 -9.0170 -1.3760 18 6 4.1771 -10.4379 -0.8080 19 7 3.0843 -10.1054 0.1183 20 6 2.1227 -10.7889 0.7699 21 8 1.3914 -10.2141 1.5482 22 6 1.9561 -12.2676 0.5315 23 6 3.2482 -13.0428 0.2655 24 9 3.8273 -13.4159 1.4831 25 9 2.9589 -14.1883 -0.4837 26 6 0.6928 -12.7276 -0.1986 27 6 0.8470 -12.9868 1.3018 28 1 -0.4850 0.8401 -0.0004 29 1 3.1242 -3.7315 0.8894 30 1 3.1241 -3.7315 -0.8905 31 1 3.8005 -6.1837 0.0004 32 1 1.7323 -7.8794 -0.8958 33 1 1.7104 -7.8710 0.8839 34 1 5.0104 -8.5408 -1.5974 35 1 3.3255 -8.9180 -2.1795 36 1 5.1275 -10.6255 -0.3085 37 1 3.9165 -11.2160 -1.5253 38 1 3.9428 -12.4117 -0.2890 39 1 -0.0182 -11.9607 -0.5062 40 1 0.7818 -13.5826 -0.8688 41 1 1.0375 -14.0123 1.6183 42 1 0.2374 -12.3905 1.9806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689509454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:16 Heat of formation + Delta-G solvation = -98.521788 kcal Electronic energy + Delta-G solvation = -27723.292732 eV Core-core repulsion = 23275.145312 eV Total energy + Delta-G solvation = -4448.147421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.56875 -47.54181 -41.29932 -39.33610 -38.73436 -36.69208 -34.50660 -32.43094 -30.99928 -29.98852 -28.39757 -27.41592 -25.48368 -24.28736 -23.56553 -23.08512 -21.49171 -20.53465 -19.58148 -18.37471 -17.93744 -17.79180 -17.70660 -16.78526 -16.53195 -16.21470 -15.81243 -15.29437 -15.23808 -14.80928 -14.75674 -14.49592 -14.27892 -14.06954 -13.92987 -13.87178 -13.63401 -13.29957 -13.20349 -12.99386 -12.56659 -12.49696 -12.30279 -12.04230 -11.96620 -11.77215 -11.26981 -11.18915 -11.07414 -11.02211 -10.87260 -10.75213 -10.27777 -9.81247 -9.44445 -9.32270 -9.08205 -8.92076 -8.22980 -6.50210 -6.21907 -3.92479 1.86858 2.02463 2.86498 3.05090 3.09063 3.12754 3.21288 3.28235 3.32824 3.51218 3.54624 3.71820 3.73651 3.85917 4.07471 4.19878 4.32292 4.38402 4.45867 4.55732 4.60986 4.67539 4.71693 4.86656 5.06392 5.13277 5.15399 5.18876 5.23128 5.33779 5.45852 5.57066 5.62502 5.67399 5.88337 5.94813 6.12343 6.53034 7.10143 7.59006 7.59585 7.65977 8.35078 8.59675 9.23391 10.85562 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.001798 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.454961 B =15571.086672 C =16059.471146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.736 5.736 14 C 0.116 3.884 15 C 0.126 3.874 16 H 0.104 0.896 17 C -0.146 4.146 18 C 0.084 3.916 19 N -0.642 5.642 20 C 0.586 3.414 21 O -0.510 6.510 22 C -0.236 4.236 23 C 0.292 3.708 24 F -0.196 7.196 25 F -0.197 7.197 26 C -0.126 4.126 27 C -0.123 4.123 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -29.182 -3.620 31.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.392 5.392 14 C -0.009 4.009 15 C 0.023 3.977 16 H 0.122 0.878 17 C -0.184 4.184 18 C -0.039 4.039 19 N -0.379 5.379 20 C 0.374 3.626 21 O -0.384 6.384 22 C -0.240 4.240 23 C 0.239 3.761 24 F -0.177 7.177 25 F -0.178 7.178 26 C -0.164 4.164 27 C -0.160 4.160 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.615 -29.274 -3.046 30.962 hybrid contribution 2.638 1.143 0.121 2.878 sum 12.253 -28.131 -2.924 30.822 Atomic orbital electron populations 1.70033 1.05956 1.27349 1.46903 1.25006 0.95040 0.99068 0.94572 0.86107 0.79553 0.81866 0.77895 1.19622 1.20573 1.20578 1.22904 0.94928 0.91618 1.58848 0.90858 1.85453 1.04904 0.96348 1.96707 1.23517 1.06588 0.95190 1.04953 1.20319 0.86505 0.86195 0.75180 1.90727 1.15378 1.85508 1.47094 1.45820 1.09909 1.05050 1.78420 1.21406 0.95173 0.80457 1.03882 1.22930 0.96007 0.81865 0.96883 0.87847 1.23590 1.03342 0.94948 0.96495 1.23207 0.90372 0.99192 0.91112 1.49596 1.30491 1.09920 1.47923 1.18482 0.79618 0.85706 0.78762 1.90801 1.44408 1.69218 1.34008 1.22537 0.92757 0.93792 1.14962 1.21429 0.93176 0.83032 0.78475 1.93027 1.85364 1.92609 1.46690 1.92987 1.94517 1.53918 1.76348 1.23207 0.93483 1.03494 0.96187 1.23122 0.96483 1.01104 0.95302 0.92230 0.89176 0.89143 0.76871 0.91093 0.89946 0.88233 0.87804 0.88746 0.89623 0.86018 0.86833 0.86379 0.87104 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.20 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 11 C 0.53 9.95 7.85 -10.99 -0.09 9.86 16 12 O -0.51 -12.02 15.86 5.55 0.09 -11.93 16 13 N -0.74 -9.46 5.56 -60.30 -0.33 -9.80 16 14 C 0.12 1.41 5.46 -4.04 -0.02 1.39 16 15 C 0.13 0.96 4.07 -72.37 -0.29 0.67 16 16 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 17 C -0.15 -0.61 8.02 -26.21 -0.21 -0.82 16 18 C 0.08 0.31 6.16 -8.48 -0.05 0.26 16 19 N -0.64 -5.19 3.54 -177.39 -0.63 -5.81 16 20 C 0.59 6.32 7.52 -10.99 -0.08 6.23 16 21 O -0.51 -7.71 15.84 5.56 0.09 -7.62 16 22 C -0.24 -1.92 2.34 -155.66 -0.36 -2.28 16 23 C 0.29 1.97 5.24 37.16 0.19 2.17 16 24 F -0.20 -1.73 17.29 2.25 0.04 -1.69 16 25 F -0.20 -1.40 15.92 2.25 0.04 -1.37 16 26 C -0.13 -0.84 9.63 -26.71 -0.26 -1.10 16 27 C -0.12 -0.95 9.69 -26.71 -0.26 -1.20 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.40 3.59 8.47 -40.82 -0.35 3.25 16 32 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.08 1.32 7.14 -51.93 -0.37 0.94 16 34 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.10 0.51 7.95 -51.93 -0.41 0.10 16 36 H 0.09 0.18 8.13 -51.93 -0.42 -0.25 16 37 H 0.09 0.18 7.04 -51.93 -0.37 -0.18 16 38 H 0.12 0.52 3.87 -51.93 -0.20 0.31 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.12 0.61 7.22 -51.93 -0.38 0.23 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -38.45 376.15 -7.94 -46.39 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.38 Total: -0.25 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.01 Total: -0.56 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.23 Total: -41.11 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.45 -7.94 -46.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.131 kcal (2) G-P(sol) polarization free energy of solvation -38.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds