Wall clock time and date at job start Wed Apr 1 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00173 * 2 1 4 4 H 1.48507 * 109.46698 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47349 * 299.99690 * 3 2 1 6 6 H 1.48499 * 109.47259 * 59.99923 * 3 2 1 7 7 C 1.38800 * 119.99221 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99423 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00425 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99899 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47269 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99817 * 0.02562 * 11 10 9 13 13 N 1.34766 * 120.00319 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00388 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47440 * 180.72710 * 14 13 11 16 16 H 1.08999 * 112.74285 * 45.12706 * 15 14 13 17 17 C 1.53502 * 113.46570 * 274.30948 * 15 14 13 18 18 C 1.53503 * 83.34636 * 219.15290 * 17 15 14 19 19 N 1.47072 * 113.46928 * 175.87490 * 15 14 13 20 20 C 1.34773 * 136.05653 * 321.93995 * 19 15 14 21 21 O 1.21283 * 120.00377 * 355.72665 * 20 19 15 22 22 C 1.50701 * 120.00149 * 175.73269 * 20 19 15 23 23 C 1.53004 * 115.54853 * 34.32535 * 22 20 19 24 24 F 1.39898 * 109.47270 * 85.58449 * 23 22 20 25 25 F 1.39905 * 109.47069 * 205.58519 * 23 22 20 26 26 C 1.52998 * 117.50074 * 248.61894 * 22 20 19 27 27 C 1.52997 * 117.49840 * 179.97438 * 22 20 19 28 28 H 0.97008 * 119.99952 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47163 * 59.99825 * 10 9 7 30 30 H 1.08995 * 109.47002 * 300.00126 * 10 9 7 31 31 H 0.97001 * 120.00176 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47112 * 60.72122 * 14 13 11 33 33 H 1.09002 * 109.46828 * 300.72737 * 14 13 11 34 34 H 1.09001 * 114.20883 * 105.56447 * 17 15 14 35 35 H 1.08995 * 114.20831 * 332.73880 * 17 15 14 36 36 H 1.08996 * 113.46341 * 271.28982 * 18 17 15 37 37 H 1.08992 * 113.47141 * 140.84514 * 18 17 15 38 38 H 1.09000 * 109.46811 * 325.58279 * 23 22 20 39 39 H 1.09002 * 117.49353 * 359.97438 * 26 22 20 40 40 H 1.09000 * 117.50267 * 145.01808 * 26 22 20 41 41 H 1.09001 * 117.49872 * 214.97650 * 27 22 20 42 42 H 1.08993 * 117.50414 * 0.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1290 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8437 -6.3432 0.0007 14 6 2.3299 -7.7152 0.0008 15 6 3.5018 -8.6986 0.0199 16 1 4.2716 -8.4229 0.7405 17 6 4.0553 -9.0170 -1.3760 18 6 4.1771 -10.4379 -0.8080 19 7 3.0843 -10.1054 0.1183 20 6 2.1227 -10.7889 0.7699 21 8 1.3914 -10.2141 1.5482 22 6 1.9561 -12.2676 0.5315 23 6 3.2482 -13.0428 0.2655 24 9 3.8273 -13.4159 1.4831 25 9 2.9589 -14.1883 -0.4837 26 6 0.6928 -12.7276 -0.1986 27 6 0.8470 -12.9868 1.3018 28 1 -0.4850 0.8401 -0.0004 29 1 3.1242 -3.7315 0.8894 30 1 3.1241 -3.7315 -0.8905 31 1 3.8005 -6.1837 0.0004 32 1 1.7323 -7.8794 -0.8958 33 1 1.7104 -7.8710 0.8839 34 1 5.0104 -8.5408 -1.5974 35 1 3.3255 -8.9180 -2.1795 36 1 5.1275 -10.6255 -0.3085 37 1 3.9165 -11.2160 -1.5253 38 1 3.9428 -12.4117 -0.2890 39 1 -0.0182 -11.9607 -0.5062 40 1 0.7818 -13.5826 -0.8688 41 1 1.0375 -14.0123 1.6183 42 1 0.2374 -12.3905 1.9806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689509454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:15 Heat of formation + Delta-G solvation = -127.126331 kcal Electronic energy + Delta-G solvation = -27724.533118 eV Core-core repulsion = 23275.145312 eV Total energy + Delta-G solvation = -4449.387807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.12333 -48.10716 -41.96056 -40.59330 -39.62461 -37.42456 -35.80520 -34.58366 -31.97593 -31.07741 -29.15879 -28.29340 -27.61505 -24.87424 -24.31000 -23.66886 -22.09956 -21.86902 -20.33337 -19.81446 -18.92361 -18.44348 -18.27494 -17.88171 -17.71017 -17.01783 -16.88196 -16.74096 -16.57239 -16.21725 -15.77544 -15.43267 -15.16239 -14.96452 -14.83207 -14.66858 -14.55956 -14.44667 -14.24948 -13.81539 -13.76451 -13.56327 -13.16008 -12.99273 -12.90335 -12.83805 -12.60445 -12.56170 -12.47855 -11.89823 -11.83977 -11.70247 -11.41786 -11.16013 -11.11300 -10.97940 -10.26705 -10.20977 -9.96332 -8.67861 -8.34632 -6.13237 1.14937 1.21166 1.38057 1.42130 1.51529 1.57080 1.60976 2.26207 2.27010 2.31292 2.58309 2.97645 2.99749 3.02636 3.20306 3.31862 3.38398 3.51565 3.66318 3.86767 3.92990 3.97942 4.00036 4.02250 4.27181 4.30786 4.38293 4.45288 4.50622 4.50813 4.58140 4.64516 4.75141 4.86490 4.97771 5.00045 5.20985 5.33716 5.42466 6.20329 6.46018 6.47156 6.84338 7.06624 7.21538 8.74933 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.001798 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.454961 B =15571.086672 C =16059.471146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.161 6.161 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.570 6.570 13 N -0.703 5.703 14 C 0.121 3.879 15 C 0.120 3.880 16 H 0.126 0.874 17 C -0.129 4.129 18 C 0.082 3.918 19 N -0.647 5.647 20 C 0.576 3.424 21 O -0.572 6.572 22 C -0.242 4.242 23 C 0.297 3.703 24 F -0.208 7.208 25 F -0.196 7.196 26 C -0.111 4.111 27 C -0.134 4.134 28 H 0.270 0.730 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.422 0.578 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.154 0.846 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.703 -30.035 -5.104 34.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.067 5.933 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.359 5.359 14 C -0.004 4.004 15 C 0.017 3.983 16 H 0.143 0.857 17 C -0.166 4.166 18 C -0.038 4.038 19 N -0.382 5.382 20 C 0.366 3.634 21 O -0.451 6.451 22 C -0.246 4.246 23 C 0.244 3.756 24 F -0.190 7.190 25 F -0.177 7.177 26 C -0.148 4.148 27 C -0.171 4.171 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.152 0.848 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.171 0.829 39 H 0.123 0.877 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.052 -30.172 -4.568 33.596 hybrid contribution 1.317 1.305 0.579 1.943 sum 15.370 -28.866 -3.989 32.946 Atomic orbital electron populations 1.70207 1.08080 1.28524 1.48160 1.26184 0.95989 1.03499 0.93802 0.84865 0.78701 0.76143 0.77975 1.17716 1.19936 1.20167 1.23235 0.95410 0.91714 1.58621 0.89569 1.85710 1.10944 0.99613 1.97072 1.23339 1.03415 0.93592 1.07247 1.20200 0.86157 0.86913 0.74954 1.90718 1.17890 1.86168 1.50075 1.45434 1.10506 1.04192 1.75755 1.21370 0.96976 0.80849 1.01218 1.23196 0.94251 0.80512 1.00348 0.85694 1.23583 1.04343 0.95107 0.93614 1.23603 0.89955 0.99691 0.90564 1.49824 1.30651 1.10263 1.47442 1.18954 0.79551 0.86701 0.78233 1.90771 1.46847 1.70584 1.36859 1.22549 0.94021 0.92515 1.15500 1.21618 0.92700 0.83050 0.78206 1.93005 1.85432 1.92751 1.47775 1.92988 1.94550 1.54027 1.76176 1.23249 0.92332 1.03606 0.95648 1.23121 0.96728 1.01413 0.95859 0.92055 0.86992 0.86356 0.73996 0.92380 0.94294 0.84756 0.88540 0.85604 0.87392 0.82945 0.87748 0.84214 0.85731 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 2 C 0.01 0.55 5.49 84.86 0.47 1.02 16 3 Si 1.00 43.46 29.55 68.60 2.03 45.48 16 4 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.54 -30.81 9.50 67.95 0.65 -30.16 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 10 C -0.12 -4.84 6.16 71.23 0.44 -4.40 16 11 C 0.53 19.91 7.85 87.66 0.69 20.60 16 12 O -0.57 -27.97 15.86 -3.07 -0.05 -28.02 16 13 N -0.70 -17.14 5.56 -463.07 -2.57 -19.71 16 14 C 0.12 2.97 5.46 86.38 0.47 3.44 16 15 C 0.12 1.55 4.07 41.80 0.17 1.72 16 16 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 17 C -0.13 -0.53 8.02 30.93 0.25 -0.29 16 18 C 0.08 0.24 6.16 83.19 0.51 0.75 16 19 N -0.65 -9.31 3.54 -833.53 -2.95 -12.26 16 20 C 0.58 12.56 7.52 87.66 0.66 13.22 16 21 O -0.57 -18.69 15.84 -3.04 -0.05 -18.74 16 22 C -0.24 -3.77 2.34 -52.93 -0.12 -3.89 16 23 C 0.30 3.28 5.24 71.98 0.38 3.66 16 24 F -0.21 -3.30 17.29 44.97 0.78 -2.52 16 25 F -0.20 -2.26 15.92 44.97 0.72 -1.54 16 26 C -0.11 -1.43 9.63 30.61 0.29 -1.13 16 27 C -0.13 -2.13 9.69 30.61 0.30 -1.84 16 28 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 31 H 0.42 6.21 8.47 -92.71 -0.79 5.42 16 32 H 0.06 1.58 7.89 -2.39 -0.02 1.56 16 33 H 0.04 1.33 7.14 -2.39 -0.02 1.31 16 34 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.10 0.62 7.95 -2.39 -0.02 0.60 16 36 H 0.13 -0.29 8.13 -2.39 -0.02 -0.31 16 37 H 0.11 -0.09 7.04 -2.39 -0.02 -0.10 16 38 H 0.15 0.68 3.87 -2.39 -0.01 0.67 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.14 1.17 7.22 -2.39 -0.02 1.16 16 41 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 2.01 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -91.56 376.15 2.45 -89.11 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.29 Total: 11.94 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.14 Total: 2.69 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -5.24 Total: -88.25 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.10 Total: -46.75 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 1.49 Total: -4.06 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -91.56 2.45 -89.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.019 kcal (2) G-P(sol) polarization free energy of solvation -91.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds