Wall clock time and date at job start Wed Apr 1 2020 05:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38182 * 126.44913 * 204.30737 * 3 2 1 5 5 N 1.34420 * 108.38236 * 179.73714 * 4 3 2 6 6 H 0.96998 * 125.40802 * 179.97438 * 5 4 3 7 7 C 1.37755 * 109.19117 * 359.97438 * 5 4 3 8 8 C 1.46791 * 125.85281 * 179.97438 * 7 5 4 9 9 O 1.21678 * 119.99803 * 180.02562 * 8 7 5 10 10 N 1.34776 * 119.99573 * 0.02697 * 8 7 5 11 11 C 1.46500 * 119.99790 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47400 * 175.01514 * 11 10 8 13 13 H 1.08996 * 112.74032 * 314.99524 * 12 11 10 14 14 C 1.53499 * 113.46427 * 85.80941 * 12 11 10 15 15 C 1.53498 * 83.34625 * 140.84912 * 14 12 11 16 16 N 1.47067 * 113.47040 * 184.24238 * 12 11 10 17 17 C 1.34782 * 136.05487 * 38.13689 * 16 12 11 18 18 O 1.21281 * 120.00077 * 5.03559 * 17 16 12 19 19 C 1.50698 * 119.99829 * 185.03529 * 17 16 12 20 20 S 1.81002 * 109.46864 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99992 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99926 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00437 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99135 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00111 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47311 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47049 * 120.00070 * 25 23 21 28 28 H 1.48502 * 109.46522 * 239.99797 * 25 23 21 29 29 C 1.36405 * 108.29736 * 359.97438 * 7 5 4 30 30 H 1.08003 * 125.81052 * 359.71275 * 4 3 2 31 31 H 0.96996 * 120.00417 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47189 * 295.01855 * 11 10 8 33 33 H 1.08998 * 109.47184 * 55.01863 * 11 10 8 34 34 H 1.08997 * 114.20810 * 254.43858 * 14 12 11 35 35 H 1.09000 * 114.20817 * 27.26275 * 14 12 11 36 36 H 1.08997 * 113.47015 * 219.15458 * 15 14 12 37 37 H 1.09002 * 113.46481 * 88.70740 * 15 14 12 38 38 H 1.08997 * 109.47085 * 299.99776 * 19 17 16 39 39 H 1.08994 * 109.47194 * 59.99924 * 19 17 16 40 40 H 0.97010 * 119.99355 * 179.97438 * 24 23 21 41 41 H 1.08005 * 126.48374 * 180.02562 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3885 1.0140 0.4575 5 7 4.6666 0.6322 0.2913 6 1 5.4458 1.1583 0.5298 7 6 4.6942 -0.6248 -0.2716 8 6 5.9009 -1.3890 -0.6100 9 8 5.8011 -2.4954 -1.1064 10 7 7.1194 -0.8650 -0.3708 11 6 8.3238 -1.6279 -0.7080 12 6 9.5617 -0.7652 -0.4544 13 1 9.4534 0.2498 -0.8366 14 6 10.0607 -0.8236 0.9960 15 6 11.4446 -0.8162 0.3320 16 7 10.8192 -1.4121 -0.8583 17 6 11.2216 -2.2025 -1.8731 18 8 10.4602 -2.4569 -2.7822 19 6 12.6176 -2.7701 -1.8782 20 16 12.8524 -3.7812 -3.3610 21 6 14.5172 -4.3032 -3.1149 22 1 15.0601 -3.9812 -2.2386 23 6 15.1308 -5.1284 -4.0472 24 7 14.4688 -5.5212 -5.1149 25 14 16.8955 -5.6824 -3.7858 26 1 17.4123 -5.1074 -2.5180 27 1 16.9434 -7.1648 -3.7134 28 1 17.7339 -5.2148 -4.9189 29 6 3.4080 -1.0376 -0.4607 30 1 3.0590 1.9531 0.8770 31 1 7.1990 0.0172 0.0245 32 1 8.3720 -2.5234 -0.0886 33 1 8.2900 -1.9145 -1.7591 34 1 9.8407 0.0697 1.5806 35 1 9.8188 -1.7511 1.5149 36 1 12.1636 -1.4743 0.8199 37 1 11.8382 0.1856 0.1600 38 1 13.3412 -1.9549 -1.8764 39 1 12.7624 -3.3864 -0.9910 40 1 14.8978 -6.0976 -5.7667 41 1 3.0915 -1.9799 -0.8832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689517877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:22 Heat of formation + Delta-G solvation = 46.976578 kcal Electronic energy + Delta-G solvation = -25833.907439 eV Core-core repulsion = 21842.758487 eV Total energy + Delta-G solvation = -3991.148952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.12621 -40.68537 -39.32914 -37.62343 -36.75102 -35.11027 -32.45772 -32.12054 -31.02211 -30.38763 -28.58166 -28.16993 -25.50983 -24.20180 -23.38744 -22.64740 -22.17650 -20.86322 -20.03613 -18.82450 -17.78236 -17.15276 -16.75262 -16.67212 -16.34532 -15.91884 -15.44656 -15.24958 -14.88010 -14.83013 -14.44370 -14.33577 -14.05416 -13.92615 -13.78168 -13.77169 -13.39653 -13.15502 -12.99166 -12.80873 -12.54266 -12.39367 -12.26976 -12.03799 -11.75962 -11.09302 -11.06895 -10.94847 -10.78684 -10.51734 -9.84600 -9.71410 -9.61460 -9.36373 -9.10252 -8.94907 -8.77701 -8.27054 -6.53906 -6.24444 -3.95636 0.84848 1.28657 2.20184 2.33913 2.44565 2.83065 2.87088 2.98703 3.19636 3.22689 3.25612 3.28802 3.51369 3.73996 3.92846 4.17016 4.25076 4.31137 4.41325 4.54875 4.64473 4.67469 4.83397 5.01242 5.05492 5.10956 5.20664 5.33638 5.35750 5.45594 5.51374 5.69241 5.76045 5.81828 5.82749 5.85560 6.00620 6.08069 6.11560 6.50967 7.00326 7.26106 7.56941 7.70695 7.76427 8.32411 8.43774 9.20866 10.83033 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.001677 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.495894 B =16695.600026 C =17577.691508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.289 3.711 3 C -0.133 4.133 4 C 0.096 3.904 5 N -0.524 5.524 6 H 0.425 0.575 7 C -0.045 4.045 8 C 0.586 3.414 9 O -0.511 6.511 10 N -0.726 5.726 11 C 0.112 3.888 12 C 0.123 3.877 13 H 0.094 0.906 14 C -0.153 4.153 15 C 0.101 3.899 16 N -0.647 5.647 17 C 0.561 3.439 18 O -0.507 6.507 19 C -0.144 4.144 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.866 5.866 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.280 1.280 29 C -0.055 4.055 30 H 0.189 0.811 31 H 0.392 0.608 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.730 19.060 18.593 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.048 4.048 5 N -0.118 5.118 6 H 0.264 0.736 7 C -0.156 4.156 8 C 0.372 3.628 9 O -0.385 6.385 10 N -0.378 5.378 11 C -0.012 4.012 12 C 0.018 3.982 13 H 0.112 0.888 14 C -0.191 4.191 15 C -0.022 4.022 16 N -0.387 5.387 17 C 0.351 3.649 18 O -0.380 6.380 19 C -0.295 4.295 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 C -0.082 4.082 30 H 0.206 0.794 31 H 0.225 0.775 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.370 17.587 16.487 29.712 hybrid contribution 2.979 0.766 1.468 3.409 sum -14.390 18.353 17.954 29.433 Atomic orbital electron populations 1.81296 1.11818 1.07710 1.10106 1.24627 0.91420 0.93620 0.92954 1.15395 0.85119 0.98358 1.15462 1.22274 0.82240 0.99493 1.00839 1.41750 1.08244 1.14811 1.47036 0.73598 1.20096 0.95522 0.87879 1.12151 1.16965 0.81519 0.85592 0.78709 1.90946 1.85910 1.18998 1.42682 1.45675 1.05813 1.20993 1.65279 1.21667 0.81389 0.94115 1.04007 1.22748 0.85996 0.96416 0.93044 0.88824 1.23616 0.96492 1.03875 0.95102 1.22880 0.96667 0.98792 0.83873 1.49756 1.12255 1.50258 1.26455 1.20045 0.89138 0.76845 0.78871 1.90737 1.55259 1.58464 1.33532 1.23468 0.94412 1.03886 1.07694 1.85455 1.17441 1.58925 1.21392 1.22890 0.98265 1.36013 1.11249 0.90871 1.24998 0.98912 0.95207 0.94441 1.70031 1.36916 1.33109 1.10103 0.86107 0.82543 0.78490 0.78297 1.19623 1.20518 1.20550 1.21116 0.89262 0.99046 0.98783 0.79403 0.77476 0.90419 0.88723 0.89294 0.88292 0.89891 0.89706 0.89349 0.89195 0.92178 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.77 18.54 41.84 0.78 -4.00 16 2 C 0.29 2.41 15.83 -22.47 -0.36 2.05 16 3 C -0.13 -0.78 5.97 -106.84 -0.64 -1.42 16 4 C 0.10 0.22 11.90 -16.44 -0.20 0.02 16 5 N -0.52 -1.05 5.92 -9.27 -0.05 -1.10 16 6 H 0.43 -0.69 8.14 -40.82 -0.33 -1.02 16 7 C -0.05 -0.29 6.99 -82.41 -0.58 -0.87 16 8 C 0.59 5.61 7.79 -12.80 -0.10 5.51 16 9 O -0.51 -7.58 16.86 5.21 0.09 -7.49 16 10 N -0.73 -4.98 5.55 -61.58 -0.34 -5.32 16 11 C 0.11 1.17 5.47 -4.04 -0.02 1.15 16 12 C 0.12 1.02 4.07 -72.38 -0.29 0.73 16 13 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.15 -0.79 8.02 -26.22 -0.21 -1.00 16 15 C 0.10 0.76 8.42 -8.50 -0.07 0.69 16 16 N -0.65 -8.09 3.57 -177.42 -0.63 -8.72 16 17 C 0.56 10.31 7.97 -10.98 -0.09 10.22 16 18 O -0.51 -11.38 15.46 5.56 0.09 -11.30 16 19 C -0.14 -2.87 5.99 36.00 0.22 -2.66 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 25 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 C -0.06 -0.40 10.54 -39.09 -0.41 -0.81 16 30 H 0.19 -0.26 8.06 -52.48 -0.42 -0.68 16 31 H 0.39 0.95 7.56 -40.82 -0.31 0.64 16 32 H 0.08 0.90 7.89 -51.93 -0.41 0.49 16 33 H 0.09 1.43 7.14 -51.93 -0.37 1.06 16 34 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.10 0.56 7.95 -51.93 -0.41 0.15 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -40.93 384.24 -8.10 -49.03 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -4.76 Total: -4.75 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.55 Total: 0.77 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.48 Total: -44.44 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.93 -8.10 -49.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689517877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.008 kcal (2) G-P(sol) polarization free energy of solvation -40.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds