Wall clock time and date at job start Wed Apr 1 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38182 * 126.44913 * 204.30737 * 3 2 1 5 5 N 1.34420 * 108.38236 * 179.73714 * 4 3 2 6 6 H 0.96998 * 125.40802 * 179.97438 * 5 4 3 7 7 C 1.37755 * 109.19117 * 359.97438 * 5 4 3 8 8 C 1.46791 * 125.85281 * 179.97438 * 7 5 4 9 9 O 1.21678 * 119.99803 * 180.02562 * 8 7 5 10 10 N 1.34776 * 119.99573 * 0.02697 * 8 7 5 11 11 C 1.46500 * 119.99790 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47400 * 175.01514 * 11 10 8 13 13 H 1.08996 * 112.74032 * 314.99524 * 12 11 10 14 14 C 1.53499 * 113.46427 * 85.80941 * 12 11 10 15 15 C 1.53498 * 83.34625 * 140.84912 * 14 12 11 16 16 N 1.47067 * 113.47040 * 184.24238 * 12 11 10 17 17 C 1.34782 * 136.05487 * 38.13689 * 16 12 11 18 18 O 1.21281 * 120.00077 * 5.03559 * 17 16 12 19 19 C 1.50698 * 119.99829 * 185.03529 * 17 16 12 20 20 S 1.81002 * 109.46864 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99992 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99926 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00437 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99135 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00111 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47311 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47049 * 120.00070 * 25 23 21 28 28 H 1.48502 * 109.46522 * 239.99797 * 25 23 21 29 29 C 1.36405 * 108.29736 * 359.97438 * 7 5 4 30 30 H 1.08003 * 125.81052 * 359.71275 * 4 3 2 31 31 H 0.96996 * 120.00417 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47189 * 295.01855 * 11 10 8 33 33 H 1.08998 * 109.47184 * 55.01863 * 11 10 8 34 34 H 1.08997 * 114.20810 * 254.43858 * 14 12 11 35 35 H 1.09000 * 114.20817 * 27.26275 * 14 12 11 36 36 H 1.08997 * 113.47015 * 219.15458 * 15 14 12 37 37 H 1.09002 * 113.46481 * 88.70740 * 15 14 12 38 38 H 1.08997 * 109.47085 * 299.99776 * 19 17 16 39 39 H 1.08994 * 109.47194 * 59.99924 * 19 17 16 40 40 H 0.97010 * 119.99355 * 179.97438 * 24 23 21 41 41 H 1.08005 * 126.48374 * 180.02562 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3885 1.0140 0.4575 5 7 4.6666 0.6322 0.2913 6 1 5.4458 1.1583 0.5298 7 6 4.6942 -0.6248 -0.2716 8 6 5.9009 -1.3890 -0.6100 9 8 5.8011 -2.4954 -1.1064 10 7 7.1194 -0.8650 -0.3708 11 6 8.3238 -1.6279 -0.7080 12 6 9.5617 -0.7652 -0.4544 13 1 9.4534 0.2498 -0.8366 14 6 10.0607 -0.8236 0.9960 15 6 11.4446 -0.8162 0.3320 16 7 10.8192 -1.4121 -0.8583 17 6 11.2216 -2.2025 -1.8731 18 8 10.4602 -2.4569 -2.7822 19 6 12.6176 -2.7701 -1.8782 20 16 12.8524 -3.7812 -3.3610 21 6 14.5172 -4.3032 -3.1149 22 1 15.0601 -3.9812 -2.2386 23 6 15.1308 -5.1284 -4.0472 24 7 14.4688 -5.5212 -5.1149 25 14 16.8955 -5.6824 -3.7858 26 1 17.4123 -5.1074 -2.5180 27 1 16.9434 -7.1648 -3.7134 28 1 17.7339 -5.2148 -4.9189 29 6 3.4080 -1.0376 -0.4607 30 1 3.0590 1.9531 0.8770 31 1 7.1990 0.0172 0.0245 32 1 8.3720 -2.5234 -0.0886 33 1 8.2900 -1.9145 -1.7591 34 1 9.8407 0.0697 1.5806 35 1 9.8188 -1.7511 1.5149 36 1 12.1636 -1.4743 0.8199 37 1 11.8382 0.1856 0.1600 38 1 13.3412 -1.9549 -1.8764 39 1 12.7624 -3.3864 -0.9910 40 1 14.8978 -6.0976 -5.7667 41 1 3.0915 -1.9799 -0.8832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689517877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:21 Heat of formation + Delta-G solvation = 14.087025 kcal Electronic energy + Delta-G solvation = -25835.333637 eV Core-core repulsion = 21842.758487 eV Total energy + Delta-G solvation = -3992.575150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57792 -41.57568 -40.16464 -38.88996 -37.43961 -35.95088 -34.60506 -32.60929 -32.17296 -31.09066 -29.45705 -29.18515 -27.66386 -24.87046 -23.79180 -23.37075 -23.06086 -21.40293 -20.69841 -20.06665 -19.36568 -18.00531 -17.72292 -17.24145 -17.17673 -16.90241 -16.69099 -16.59846 -16.27897 -15.72750 -15.56630 -15.39871 -14.92301 -14.72986 -14.64566 -14.49029 -14.35772 -14.05147 -13.92593 -13.79659 -13.75947 -13.38822 -13.16414 -12.98305 -12.93819 -12.91679 -12.61031 -12.38491 -11.73057 -11.70536 -11.35928 -11.17536 -10.86194 -10.34854 -10.29424 -10.14724 -9.77844 -9.38581 -8.70320 -8.36367 -6.15549 0.38052 0.76810 1.17867 1.40533 1.40956 1.54364 1.54972 1.67928 1.81635 1.99406 2.17734 2.22981 2.26420 2.67347 2.98057 3.18799 3.20565 3.35262 3.66268 3.73240 3.81763 4.01148 4.05094 4.19218 4.21718 4.24994 4.44057 4.49851 4.58971 4.62864 4.70256 4.77092 4.91852 4.99450 5.01548 5.19251 5.33245 5.36885 5.39887 5.54138 6.18096 6.32198 6.49159 6.61578 6.65812 7.04706 7.07837 7.12898 8.73262 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.001677 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.495894 B =16695.600026 C =17577.691508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.314 3.686 3 C -0.165 4.165 4 C 0.153 3.847 5 N -0.498 5.498 6 H 0.448 0.552 7 C -0.057 4.057 8 C 0.584 3.416 9 O -0.578 6.578 10 N -0.700 5.700 11 C 0.119 3.881 12 C 0.121 3.879 13 H 0.127 0.873 14 C -0.123 4.123 15 C 0.092 3.908 16 N -0.652 5.652 17 C 0.556 3.444 18 O -0.566 6.566 19 C -0.117 4.117 20 S -0.156 6.156 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.273 1.273 29 C -0.069 4.069 30 H 0.241 0.759 31 H 0.419 0.581 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.271 0.729 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.119 23.180 22.634 34.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C 0.000 4.000 3 C -0.175 4.175 4 C 0.006 3.994 5 N -0.094 5.094 6 H 0.292 0.708 7 C -0.168 4.168 8 C 0.372 3.628 9 O -0.457 6.457 10 N -0.353 5.353 11 C -0.006 4.006 12 C 0.017 3.983 13 H 0.144 0.856 14 C -0.160 4.160 15 C -0.029 4.029 16 N -0.389 5.389 17 C 0.345 3.655 18 O -0.444 6.444 19 C -0.268 4.268 20 S 0.071 5.929 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.823 3.177 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.199 1.199 29 C -0.097 4.097 30 H 0.257 0.743 31 H 0.257 0.743 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.162 0.838 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.719 21.817 20.633 33.893 hybrid contribution 2.397 -0.374 0.341 2.450 sum -13.322 21.443 20.974 32.820 Atomic orbital electron populations 1.81313 1.13448 1.09573 1.12484 1.24913 0.91732 0.92032 0.91314 1.15423 0.84049 0.99658 1.18343 1.22982 0.81032 0.99228 0.96206 1.41663 1.09367 1.13045 1.45329 0.70846 1.19396 0.93459 0.89730 1.14252 1.17402 0.82825 0.84976 0.77560 1.90918 1.86892 1.22109 1.45797 1.45317 1.03998 1.21666 1.64356 1.21351 0.83940 0.94931 1.00360 1.23210 0.83022 0.96536 0.95498 0.85572 1.23583 0.93383 1.06227 0.92845 1.23383 0.98256 0.99831 0.81383 1.49820 1.15222 1.48425 1.25458 1.19693 0.87989 0.78033 0.79800 1.90716 1.56298 1.61097 1.36329 1.23248 0.96642 1.03182 1.03720 1.85669 1.18494 1.61485 1.27242 1.23221 0.98176 1.36166 1.11704 0.89824 1.26167 1.04131 0.95043 0.93866 1.70205 1.39284 1.34051 1.11336 0.84874 0.75951 0.77981 0.78935 1.17793 1.20004 1.19856 1.21097 0.90412 0.99076 0.99070 0.74277 0.74268 0.92165 0.94214 0.83815 0.88800 0.89603 0.86648 0.87523 0.87795 0.91984 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.98 18.54 19.00 0.35 -10.63 16 2 C 0.31 5.06 15.83 88.33 1.40 6.46 16 3 C -0.16 -1.64 5.97 -21.30 -0.13 -1.76 16 4 C 0.15 -0.06 11.90 84.28 1.00 0.94 16 5 N -0.50 0.23 5.92 -183.25 -1.08 -0.86 16 6 H 0.45 -4.15 8.14 -92.71 -0.75 -4.91 16 7 C -0.06 -0.66 6.99 40.02 0.28 -0.38 16 8 C 0.58 11.34 7.79 86.48 0.67 12.02 16 9 O -0.58 -18.84 16.86 -4.28 -0.07 -18.91 16 10 N -0.70 -8.57 5.55 -466.98 -2.59 -11.16 16 11 C 0.12 2.51 5.47 86.38 0.47 2.99 16 12 C 0.12 1.66 4.07 41.80 0.17 1.83 16 13 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 14 C -0.12 -0.62 8.02 30.93 0.25 -0.37 16 15 C 0.09 0.99 8.42 83.18 0.70 1.69 16 16 N -0.65 -15.24 3.57 -833.63 -2.97 -18.21 16 17 C 0.56 20.91 7.97 87.66 0.70 21.60 16 18 O -0.57 -27.23 15.46 -3.03 -0.05 -27.28 16 19 C -0.12 -4.71 5.99 71.24 0.43 -4.28 16 20 S -0.16 -8.84 20.57 -56.49 -1.16 -10.00 16 21 C -0.54 -31.31 9.50 67.96 0.65 -30.66 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 25 Si 1.00 43.59 29.55 68.60 2.03 45.61 16 26 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 C -0.07 -1.02 10.54 22.59 0.24 -0.78 16 30 H 0.24 -2.45 8.06 -2.91 -0.02 -2.47 16 31 H 0.42 0.27 7.56 -92.71 -0.70 -0.43 16 32 H 0.06 1.46 7.89 -2.39 -0.02 1.44 16 33 H 0.04 1.32 7.14 -2.39 -0.02 1.30 16 34 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.09 0.68 7.95 -2.39 -0.02 0.66 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 39 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 40 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 41 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -103.42 384.24 1.68 -101.74 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: -0.35 Total: -4.38 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 7.29 Total: 10.47 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -6.01 Total: -97.25 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.12 Total: -46.19 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -103.42 1.68 -101.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689517877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.825 kcal (2) G-P(sol) polarization free energy of solvation -103.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds