Wall clock time and date at job start Wed Apr 1 2020 05:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.38182 * 126.44913 * 204.30737 * 3 2 1
5 5 N 1.34420 * 108.38236 * 179.73714 * 4 3 2
6 6 H 0.96998 * 125.40802 * 179.97438 * 5 4 3
7 7 C 1.37755 * 109.19117 * 359.97438 * 5 4 3
8 8 C 1.46791 * 125.85281 * 179.97438 * 7 5 4
9 9 O 1.21678 * 119.99803 * 180.02562 * 8 7 5
10 10 N 1.34776 * 119.99573 * 0.02697 * 8 7 5
11 11 C 1.46500 * 119.99790 * 179.97438 * 10 8 7
12 12 C 1.53001 * 109.47400 * 175.01514 * 11 10 8
13 13 H 1.08996 * 112.74032 * 314.99524 * 12 11 10
14 14 C 1.53499 * 113.46427 * 85.80941 * 12 11 10
15 15 C 1.53498 * 83.34625 * 140.84912 * 14 12 11
16 16 N 1.47067 * 113.47040 * 184.24238 * 12 11 10
17 17 C 1.34782 * 136.05487 * 38.13689 * 16 12 11
18 18 O 1.21281 * 120.00077 * 5.03559 * 17 16 12
19 19 C 1.50698 * 119.99829 * 185.03529 * 17 16 12
20 20 S 1.81002 * 109.46864 * 180.02562 * 19 17 16
21 21 C 1.76198 * 99.99992 * 180.02562 * 20 19 17
22 22 H 1.08002 * 119.99926 * 359.97438 * 21 20 19
23 23 C 1.38803 * 120.00437 * 179.97438 * 21 20 19
24 24 N 1.31630 * 119.99135 * 359.97438 * 23 21 20
25 25 Si 1.86798 * 120.00111 * 180.02562 * 23 21 20
26 26 H 1.48494 * 109.47311 * 359.97438 * 25 23 21
27 27 H 1.48500 * 109.47049 * 120.00070 * 25 23 21
28 28 H 1.48502 * 109.46522 * 239.99797 * 25 23 21
29 29 C 1.36405 * 108.29736 * 359.97438 * 7 5 4
30 30 H 1.08003 * 125.81052 * 359.71275 * 4 3 2
31 31 H 0.96996 * 120.00417 * 359.97438 * 10 8 7
32 32 H 1.09000 * 109.47189 * 295.01855 * 11 10 8
33 33 H 1.08998 * 109.47184 * 55.01863 * 11 10 8
34 34 H 1.08997 * 114.20810 * 254.43858 * 14 12 11
35 35 H 1.09000 * 114.20817 * 27.26275 * 14 12 11
36 36 H 1.08997 * 113.47015 * 219.15458 * 15 14 12
37 37 H 1.09002 * 113.46481 * 88.70740 * 15 14 12
38 38 H 1.08997 * 109.47085 * 299.99776 * 19 17 16
39 39 H 1.08994 * 109.47194 * 59.99924 * 19 17 16
40 40 H 0.97010 * 119.99355 * 179.97438 * 24 23 21
41 41 H 1.08005 * 126.48374 * 180.02562 * 29 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3885 1.0140 0.4575
5 7 4.6666 0.6322 0.2913
6 1 5.4458 1.1583 0.5298
7 6 4.6942 -0.6248 -0.2716
8 6 5.9009 -1.3890 -0.6100
9 8 5.8011 -2.4954 -1.1064
10 7 7.1194 -0.8650 -0.3708
11 6 8.3238 -1.6279 -0.7080
12 6 9.5617 -0.7652 -0.4544
13 1 9.4534 0.2498 -0.8366
14 6 10.0607 -0.8236 0.9960
15 6 11.4446 -0.8162 0.3320
16 7 10.8192 -1.4121 -0.8583
17 6 11.2216 -2.2025 -1.8731
18 8 10.4602 -2.4569 -2.7822
19 6 12.6176 -2.7701 -1.8782
20 16 12.8524 -3.7812 -3.3610
21 6 14.5172 -4.3032 -3.1149
22 1 15.0601 -3.9812 -2.2386
23 6 15.1308 -5.1284 -4.0472
24 7 14.4688 -5.5212 -5.1149
25 14 16.8955 -5.6824 -3.7858
26 1 17.4123 -5.1074 -2.5180
27 1 16.9434 -7.1648 -3.7134
28 1 17.7339 -5.2148 -4.9189
29 6 3.4080 -1.0376 -0.4607
30 1 3.0590 1.9531 0.8770
31 1 7.1990 0.0172 0.0245
32 1 8.3720 -2.5234 -0.0886
33 1 8.2900 -1.9145 -1.7591
34 1 9.8407 0.0697 1.5806
35 1 9.8188 -1.7511 1.5149
36 1 12.1636 -1.4743 0.8199
37 1 11.8382 0.1856 0.1600
38 1 13.3412 -1.9549 -1.8764
39 1 12.7624 -3.3864 -0.9910
40 1 14.8978 -6.0976 -5.7667
41 1 3.0915 -1.9799 -0.8832
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001689517877.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:24:21
Heat of formation + Delta-G solvation = 14.087025 kcal
Electronic energy + Delta-G solvation = -25835.333637 eV
Core-core repulsion = 21842.758487 eV
Total energy + Delta-G solvation = -3992.575150 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.104 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.57792 -41.57568 -40.16464 -38.88996 -37.43961 -35.95088 -34.60506 -32.60929
-32.17296 -31.09066 -29.45705 -29.18515 -27.66386 -24.87046 -23.79180 -23.37075
-23.06086 -21.40293 -20.69841 -20.06665 -19.36568 -18.00531 -17.72292 -17.24145
-17.17673 -16.90241 -16.69099 -16.59846 -16.27897 -15.72750 -15.56630 -15.39871
-14.92301 -14.72986 -14.64566 -14.49029 -14.35772 -14.05147 -13.92593 -13.79659
-13.75947 -13.38822 -13.16414 -12.98305 -12.93819 -12.91679 -12.61031 -12.38491
-11.73057 -11.70536 -11.35928 -11.17536 -10.86194 -10.34854 -10.29424 -10.14724
-9.77844 -9.38581 -8.70320 -8.36367 -6.15549 0.38052 0.76810 1.17867
1.40533 1.40956 1.54364 1.54972 1.67928 1.81635 1.99406 2.17734
2.22981 2.26420 2.67347 2.98057 3.18799 3.20565 3.35262 3.66268
3.73240 3.81763 4.01148 4.05094 4.19218 4.21718 4.24994 4.44057
4.49851 4.58971 4.62864 4.70256 4.77092 4.91852 4.99450 5.01548
5.19251 5.33245 5.36885 5.39887 5.54138 6.18096 6.32198 6.49159
6.61578 6.65812 7.04706 7.07837 7.12898 8.73262
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.025507 B = 0.001677 C = 0.001593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1097.495894 B =16695.600026 C =17577.691508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.491 5.491
2 C 0.314 3.686
3 C -0.165 4.165
4 C 0.153 3.847
5 N -0.498 5.498
6 H 0.448 0.552
7 C -0.057 4.057
8 C 0.584 3.416
9 O -0.578 6.578
10 N -0.700 5.700
11 C 0.119 3.881
12 C 0.121 3.879
13 H 0.127 0.873
14 C -0.123 4.123
15 C 0.092 3.908
16 N -0.652 5.652
17 C 0.556 3.444
18 O -0.566 6.566
19 C -0.117 4.117
20 S -0.156 6.156
21 C -0.545 4.545
22 H 0.084 0.916
23 C 0.013 3.987
24 N -0.912 5.912
25 Si 1.001 2.999
26 H -0.254 1.254
27 H -0.275 1.275
28 H -0.273 1.273
29 C -0.069 4.069
30 H 0.241 0.759
31 H 0.419 0.581
32 H 0.060 0.940
33 H 0.039 0.961
34 H 0.144 0.856
35 H 0.093 0.907
36 H 0.085 0.915
37 H 0.116 0.884
38 H 0.107 0.893
39 H 0.104 0.896
40 H 0.271 0.729
41 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.119 23.180 22.634 34.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.168 5.168
2 C 0.000 4.000
3 C -0.175 4.175
4 C 0.006 3.994
5 N -0.094 5.094
6 H 0.292 0.708
7 C -0.168 4.168
8 C 0.372 3.628
9 O -0.457 6.457
10 N -0.353 5.353
11 C -0.006 4.006
12 C 0.017 3.983
13 H 0.144 0.856
14 C -0.160 4.160
15 C -0.029 4.029
16 N -0.389 5.389
17 C 0.345 3.655
18 O -0.444 6.444
19 C -0.268 4.268
20 S 0.071 5.929
21 C -0.693 4.693
22 H 0.102 0.898
23 C -0.192 4.192
24 N -0.549 5.549
25 Si 0.823 3.177
26 H -0.178 1.178
27 H -0.200 1.200
28 H -0.199 1.199
29 C -0.097 4.097
30 H 0.257 0.743
31 H 0.257 0.743
32 H 0.078 0.922
33 H 0.058 0.942
34 H 0.162 0.838
35 H 0.112 0.888
36 H 0.104 0.896
37 H 0.134 0.866
38 H 0.125 0.875
39 H 0.122 0.878
40 H 0.080 0.920
41 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -15.719 21.817 20.633 33.893
hybrid contribution 2.397 -0.374 0.341 2.450
sum -13.322 21.443 20.974 32.820
Atomic orbital electron populations
1.81313 1.13448 1.09573 1.12484 1.24913 0.91732 0.92032 0.91314
1.15423 0.84049 0.99658 1.18343 1.22982 0.81032 0.99228 0.96206
1.41663 1.09367 1.13045 1.45329 0.70846 1.19396 0.93459 0.89730
1.14252 1.17402 0.82825 0.84976 0.77560 1.90918 1.86892 1.22109
1.45797 1.45317 1.03998 1.21666 1.64356 1.21351 0.83940 0.94931
1.00360 1.23210 0.83022 0.96536 0.95498 0.85572 1.23583 0.93383
1.06227 0.92845 1.23383 0.98256 0.99831 0.81383 1.49820 1.15222
1.48425 1.25458 1.19693 0.87989 0.78033 0.79800 1.90716 1.56298
1.61097 1.36329 1.23248 0.96642 1.03182 1.03720 1.85669 1.18494
1.61485 1.27242 1.23221 0.98176 1.36166 1.11704 0.89824 1.26167
1.04131 0.95043 0.93866 1.70205 1.39284 1.34051 1.11336 0.84874
0.75951 0.77981 0.78935 1.17793 1.20004 1.19856 1.21097 0.90412
0.99076 0.99070 0.74277 0.74268 0.92165 0.94214 0.83815 0.88800
0.89603 0.86648 0.87523 0.87795 0.91984 0.84177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -10.98 18.54 19.00 0.35 -10.63 16
2 C 0.31 5.06 15.83 88.33 1.40 6.46 16
3 C -0.16 -1.64 5.97 -21.30 -0.13 -1.76 16
4 C 0.15 -0.06 11.90 84.28 1.00 0.94 16
5 N -0.50 0.23 5.92 -183.25 -1.08 -0.86 16
6 H 0.45 -4.15 8.14 -92.71 -0.75 -4.91 16
7 C -0.06 -0.66 6.99 40.02 0.28 -0.38 16
8 C 0.58 11.34 7.79 86.48 0.67 12.02 16
9 O -0.58 -18.84 16.86 -4.28 -0.07 -18.91 16
10 N -0.70 -8.57 5.55 -466.98 -2.59 -11.16 16
11 C 0.12 2.51 5.47 86.38 0.47 2.99 16
12 C 0.12 1.66 4.07 41.80 0.17 1.83 16
13 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16
14 C -0.12 -0.62 8.02 30.93 0.25 -0.37 16
15 C 0.09 0.99 8.42 83.18 0.70 1.69 16
16 N -0.65 -15.24 3.57 -833.63 -2.97 -18.21 16
17 C 0.56 20.91 7.97 87.66 0.70 21.60 16
18 O -0.57 -27.23 15.46 -3.03 -0.05 -27.28 16
19 C -0.12 -4.71 5.99 71.24 0.43 -4.28 16
20 S -0.16 -8.84 20.57 -56.49 -1.16 -10.00 16
21 C -0.54 -31.31 9.50 67.96 0.65 -30.66 16
22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16
23 C 0.01 0.72 5.49 84.86 0.47 1.18 16
24 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16
25 Si 1.00 43.59 29.55 68.60 2.03 45.61 16
26 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16
27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
29 C -0.07 -1.02 10.54 22.59 0.24 -0.78 16
30 H 0.24 -2.45 8.06 -2.91 -0.02 -2.47 16
31 H 0.42 0.27 7.56 -92.71 -0.70 -0.43 16
32 H 0.06 1.46 7.89 -2.39 -0.02 1.44 16
33 H 0.04 1.32 7.14 -2.39 -0.02 1.30 16
34 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16
35 H 0.09 0.68 7.95 -2.39 -0.02 0.66 16
36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
37 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16
38 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16
39 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16
40 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16
41 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16
Total: -1.00 -103.42 384.24 1.68 -101.74
By element:
Atomic # 1 Polarization: -4.03 SS G_CDS: -0.35 Total: -4.38 kcal
Atomic # 6 Polarization: 3.18 SS G_CDS: 7.29 Total: 10.47 kcal
Atomic # 7 Polarization: -91.24 SS G_CDS: -6.01 Total: -97.25 kcal
Atomic # 8 Polarization: -46.07 SS G_CDS: -0.12 Total: -46.19 kcal
Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal
Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal
Total: -103.42 1.68 -101.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001689517877.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.825 kcal
(2) G-P(sol) polarization free energy of solvation -103.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.403 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds