Wall clock time and date at job start Wed Apr 1 2020 05:23:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13595 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.38077 * 125.89505 * 53.43123 * 3 2 1
5 5 C 1.39362 * 107.51407 * 179.71427 * 4 3 2
6 6 C 1.38002 * 107.48143 * 0.41835 * 5 4 3
7 7 C 1.47062 * 125.91913 * 179.83882 * 6 5 4
8 8 O 1.21644 * 119.99793 * 359.69558 * 7 6 5
9 9 N 1.34771 * 120.00020 * 179.69246 * 7 6 5
10 10 C 1.46505 * 119.99611 * 180.02562 * 9 7 6
11 11 C 1.53009 * 109.46831 * 174.96827 * 10 9 7
12 12 N 1.46495 * 115.54715 * 85.77478 * 11 10 9
13 13 C 1.34779 * 120.00375 * 65.40694 * 12 11 10
14 14 O 1.21283 * 119.99626 * 354.97760 * 13 12 11
15 15 C 1.50700 * 120.00262 * 174.97499 * 13 12 11
16 16 S 1.81006 * 109.46951 * 180.02562 * 15 13 12
17 17 C 1.76199 * 99.99857 * 180.02562 * 16 15 13
18 18 H 1.08003 * 119.99846 * 359.97438 * 17 16 15
19 19 C 1.38795 * 120.00231 * 180.02562 * 17 16 15
20 20 N 1.31634 * 119.99666 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00450 * 179.97438 * 19 17 16
22 22 H 1.48501 * 109.46757 * 359.97438 * 21 19 17
23 23 H 1.48492 * 109.47209 * 119.99625 * 21 19 17
24 24 H 1.48496 * 109.47307 * 239.99979 * 21 19 17
25 25 C 1.52993 * 117.49722 * 231.44326 * 11 10 9
26 26 C 1.52997 * 117.49928 * 300.10289 * 11 10 9
27 27 N 1.36713 * 125.89066 * 233.39840 * 3 2 1
28 28 H 0.97000 * 125.69115 * 0.02562 * 27 3 2
29 29 H 1.07998 * 126.24523 * 359.94814 * 4 3 2
30 30 H 1.08001 * 126.25882 * 180.29514 * 5 4 3
31 31 H 0.96999 * 120.00486 * 359.97438 * 9 7 6
32 32 H 1.08998 * 109.47545 * 54.97056 * 10 9 7
33 33 H 1.08996 * 109.46839 * 294.96726 * 10 9 7
34 34 H 0.97002 * 119.99938 * 245.40447 * 12 11 10
35 35 H 1.08999 * 109.47302 * 300.00003 * 15 13 12
36 36 H 1.08998 * 109.46945 * 60.00407 * 15 13 12
37 37 H 0.97004 * 119.99765 * 180.02562 * 20 19 17
38 38 H 1.09005 * 117.49813 * 215.00448 * 25 11 10
39 39 H 1.08997 * 117.50305 * 0.02987 * 25 11 10
40 40 H 1.08999 * 117.49998 * 359.97438 * 26 11 10
41 41 H 1.09000 * 117.49970 * 144.97302 * 26 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3778 -0.6654 -0.8984
5 6 4.7002 -0.3977 -0.5494
6 6 4.6782 0.4198 0.5622
7 6 5.8553 0.9459 1.2697
8 8 6.9736 0.6613 0.8849
9 7 5.6949 1.7433 2.3443
10 6 6.8676 2.2678 3.0486
11 6 6.4143 3.2368 4.1426
12 7 6.0664 2.6225 5.4262
13 6 7.0161 2.0072 6.1583
14 8 8.1377 1.8820 5.7143
15 6 6.6843 1.4749 7.5286
16 16 8.1572 0.7109 8.2519
17 6 7.5016 0.1899 9.8022
18 1 6.4666 0.3827 10.0430
19 6 8.3155 -0.4673 10.7143
20 7 9.5772 -0.7019 10.4210
21 14 7.6207 -1.0191 12.3582
22 1 6.1880 -0.6379 12.4429
23 1 7.7493 -2.4934 12.4801
24 1 8.3726 -0.3639 13.4584
25 6 7.0663 4.6204 4.1752
26 6 5.6162 4.4681 3.7093
27 7 3.3691 0.6614 0.8892
28 1 3.0624 1.2097 1.6282
29 1 3.0469 -1.2786 -1.7235
30 1 5.5811 -0.7647 -1.0551
31 1 4.8032 1.9706 2.6509
32 1 7.5111 2.7925 2.3425
33 1 7.4194 1.4431 3.4996
34 1 5.1524 2.6585 5.7493
35 1 6.3503 2.2939 8.1655
36 1 5.8916 0.7312 7.4473
37 1 10.1459 -1.1615 11.0583
38 1 7.2364 5.0737 5.1518
39 1 7.8178 4.8407 3.4171
40 1 5.4145 4.5882 2.6449
41 1 4.8320 4.8209 4.3791
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001689578242.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:23:06
Heat of formation + Delta-G solvation = 34.273598 kcal
Electronic energy + Delta-G solvation = -26211.988227 eV
Core-core repulsion = 22220.288432 eV
Total energy + Delta-G solvation = -3991.699794 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.104 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.97610 -40.21068 -39.19395 -37.46323 -36.98523 -34.63043 -32.88796 -32.47348
-31.85276 -30.60066 -29.14546 -27.48351 -25.53760 -24.15654 -23.00687 -21.83731
-21.46327 -20.90493 -20.35605 -19.58941 -18.02637 -17.89198 -16.80576 -16.49976
-15.95310 -15.81700 -15.44504 -15.07531 -14.97067 -14.84761 -14.64819 -14.44530
-14.13002 -13.99101 -13.65886 -13.52123 -13.37819 -13.28574 -12.91446 -12.84293
-12.74867 -12.53318 -12.08349 -11.89196 -11.19144 -11.10650 -11.07142 -10.87512
-10.77249 -10.41951 -9.86168 -9.73638 -9.64917 -9.34842 -9.13687 -9.07716
-8.85633 -8.29559 -6.55661 -6.26444 -3.97539 0.43735 1.65302 1.67626
2.47416 2.57301 2.79077 2.88259 2.92418 2.92621 3.18188 3.21966
3.27436 3.39312 3.42147 3.56040 4.15130 4.17186 4.26629 4.48120
4.57319 4.58975 4.70421 4.96893 5.08985 5.18805 5.23464 5.31337
5.36683 5.53786 5.59243 5.61087 5.76063 5.77020 5.81076 5.88523
5.97489 6.03945 6.16365 6.45739 6.49194 6.83961 7.02351 7.51353
7.55311 7.73267 8.30369 8.47216 9.19078 10.80941
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.011383 B = 0.002140 C = 0.001990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2459.233167 B =13079.696609 C =14068.931467
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.395 5.395
2 C 0.274 3.726
3 C 0.088 3.912
4 C -0.122 4.122
5 C -0.112 4.112
6 C 0.000 4.000
7 C 0.584 3.416
8 O -0.512 6.512
9 N -0.724 5.724
10 C 0.150 3.850
11 C 0.087 3.913
12 N -0.711 5.711
13 C 0.535 3.465
14 O -0.503 6.503
15 C -0.153 4.153
16 S -0.057 6.057
17 C -0.536 4.536
18 H 0.073 0.927
19 C 0.073 3.927
20 N -0.866 5.866
21 Si 0.919 3.081
22 H -0.272 1.272
23 H -0.279 1.279
24 H -0.280 1.280
25 C -0.155 4.155
26 C -0.172 4.172
27 N -0.515 5.515
28 H 0.422 0.578
29 H 0.160 0.840
30 H 0.163 0.837
31 H 0.393 0.607
32 H 0.085 0.915
33 H 0.094 0.906
34 H 0.400 0.600
35 H 0.090 0.910
36 H 0.089 0.911
37 H 0.268 0.732
38 H 0.104 0.896
39 H 0.106 0.894
40 H 0.105 0.895
41 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.192 8.389 -20.854 26.583
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.071 5.071
2 C -0.042 4.042
3 C -0.029 4.029
4 C -0.151 4.151
5 C -0.138 4.138
6 C -0.118 4.118
7 C 0.370 3.630
8 O -0.386 6.386
9 N -0.375 5.375
10 C 0.026 3.974
11 C -0.002 4.002
12 N -0.366 5.366
13 C 0.321 3.679
14 O -0.376 6.376
15 C -0.304 4.304
16 S 0.170 5.830
17 C -0.685 4.685
18 H 0.091 0.909
19 C -0.136 4.136
20 N -0.501 5.501
21 Si 0.745 3.255
22 H -0.197 1.197
23 H -0.205 1.205
24 H -0.205 1.205
25 C -0.194 4.194
26 C -0.210 4.210
27 N -0.113 5.113
28 H 0.261 0.739
29 H 0.177 0.823
30 H 0.181 0.819
31 H 0.226 0.774
32 H 0.103 0.897
33 H 0.113 0.887
34 H 0.235 0.765
35 H 0.108 0.892
36 H 0.107 0.893
37 H 0.078 0.922
38 H 0.123 0.877
39 H 0.124 0.876
40 H 0.123 0.877
41 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -13.046 8.009 -21.622 26.493
hybrid contribution -2.456 0.206 2.455 3.478
sum -15.502 8.215 -19.167 25.984
Atomic orbital electron populations
1.81358 1.11201 1.07904 1.06679 1.24319 0.90813 0.94333 0.94733
1.15571 0.83151 1.06189 0.97999 1.21310 0.91558 1.02067 1.00125
1.21330 0.97820 0.98980 0.95663 1.20716 0.82151 1.07288 1.01618
1.17050 0.87341 0.78693 0.79957 1.90909 1.23677 1.58032 1.65959
1.45909 1.10236 1.50902 1.30433 1.21182 0.86635 0.97812 0.91760
1.20649 1.06010 0.87316 0.86199 1.45451 1.12286 1.59440 1.19433
1.20381 0.84601 0.76690 0.86196 1.90720 1.21099 1.54578 1.71174
1.23537 1.07737 1.03899 0.95241 1.85443 1.08068 1.72350 1.17162
1.22891 0.99457 1.43981 1.02142 0.90912 1.24998 0.94669 0.95148
0.98784 1.70025 1.05170 1.39104 1.35841 0.86113 0.78959 0.78454
0.81948 1.19657 1.20518 1.20535 1.23370 0.95135 0.96923 1.03943
1.23347 0.96050 0.99167 1.02441 1.41860 1.05258 1.39000 1.25169
0.73925 0.82288 0.81924 0.77363 0.89674 0.88735 0.76535 0.89195
0.89310 0.92171 0.87720 0.87592 0.87669 0.87905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.39 -3.75 18.54 41.84 0.78 -2.98 16
2 C 0.27 1.95 15.89 -22.47 -0.36 1.59 16
3 C 0.09 0.50 6.93 -83.82 -0.58 -0.08 16
4 C -0.12 -0.66 10.80 -39.22 -0.42 -1.08 16
5 C -0.11 -0.77 10.60 -39.25 -0.42 -1.18 16
6 C 0.00 0.00 7.04 -82.03 -0.58 -0.58 16
7 C 0.58 5.76 7.80 -12.68 -0.10 5.66 16
8 O -0.51 -7.20 16.87 5.24 0.09 -7.11 16
9 N -0.72 -5.73 5.44 -61.49 -0.33 -6.06 16
10 C 0.15 1.60 5.63 -4.03 -0.02 1.58 16
11 C 0.09 0.81 1.79 -131.82 -0.24 0.57 16
12 N -0.71 -7.79 5.45 -47.61 -0.26 -8.05 16
13 C 0.53 8.97 7.66 -10.98 -0.08 8.88 16
14 O -0.50 -10.48 14.64 5.56 0.08 -10.40 16
15 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16
16 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16
17 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16
18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16
20 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16
21 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16
22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
25 C -0.15 -1.36 10.11 -26.70 -0.27 -1.63 16
26 C -0.17 -1.01 9.94 -26.70 -0.27 -1.27 16
27 N -0.52 -2.50 6.02 -6.96 -0.04 -2.54 16
28 H 0.42 0.93 8.15 -40.82 -0.33 0.60 16
29 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16
30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16
31 H 0.39 1.86 7.47 -40.82 -0.30 1.55 16
32 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16
33 H 0.09 1.41 6.83 -51.93 -0.35 1.06 16
34 H 0.40 3.15 8.83 -40.82 -0.36 2.78 16
35 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16
36 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16
37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
39 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16
40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16
LS Contribution 387.14 15.07 5.83 5.83
Total: -1.00 -37.21 387.14 -7.96 -45.16
By element:
Atomic # 1 Polarization: 6.37 SS G_CDS: -4.68 Total: 1.68 kcal
Atomic # 6 Polarization: 0.05 SS G_CDS: -2.91 Total: -2.86 kcal
Atomic # 7 Polarization: -45.54 SS G_CDS: 0.87 Total: -44.67 kcal
Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal
Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -37.21 -7.96 -45.16 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001689578242.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.436 kcal
(2) G-P(sol) polarization free energy of solvation -37.207 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.230 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds