Wall clock time and date at job start Wed Apr 1 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38077 * 125.89505 * 53.43123 * 3 2 1 5 5 C 1.39362 * 107.51407 * 179.71427 * 4 3 2 6 6 C 1.38002 * 107.48143 * 0.41835 * 5 4 3 7 7 C 1.47062 * 125.91913 * 179.83882 * 6 5 4 8 8 O 1.21644 * 119.99793 * 359.69558 * 7 6 5 9 9 N 1.34771 * 120.00020 * 179.69246 * 7 6 5 10 10 C 1.46505 * 119.99611 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.46831 * 174.96827 * 10 9 7 12 12 N 1.46495 * 115.54715 * 85.77478 * 11 10 9 13 13 C 1.34779 * 120.00375 * 65.40694 * 12 11 10 14 14 O 1.21283 * 119.99626 * 354.97760 * 13 12 11 15 15 C 1.50700 * 120.00262 * 174.97499 * 13 12 11 16 16 S 1.81006 * 109.46951 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99666 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00450 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46757 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47209 * 119.99625 * 21 19 17 24 24 H 1.48496 * 109.47307 * 239.99979 * 21 19 17 25 25 C 1.52993 * 117.49722 * 231.44326 * 11 10 9 26 26 C 1.52997 * 117.49928 * 300.10289 * 11 10 9 27 27 N 1.36713 * 125.89066 * 233.39840 * 3 2 1 28 28 H 0.97000 * 125.69115 * 0.02562 * 27 3 2 29 29 H 1.07998 * 126.24523 * 359.94814 * 4 3 2 30 30 H 1.08001 * 126.25882 * 180.29514 * 5 4 3 31 31 H 0.96999 * 120.00486 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47545 * 54.97056 * 10 9 7 33 33 H 1.08996 * 109.46839 * 294.96726 * 10 9 7 34 34 H 0.97002 * 119.99938 * 245.40447 * 12 11 10 35 35 H 1.08999 * 109.47302 * 300.00003 * 15 13 12 36 36 H 1.08998 * 109.46945 * 60.00407 * 15 13 12 37 37 H 0.97004 * 119.99765 * 180.02562 * 20 19 17 38 38 H 1.09005 * 117.49813 * 215.00448 * 25 11 10 39 39 H 1.08997 * 117.50305 * 0.02987 * 25 11 10 40 40 H 1.08999 * 117.49998 * 359.97438 * 26 11 10 41 41 H 1.09000 * 117.49970 * 144.97302 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3778 -0.6654 -0.8984 5 6 4.7002 -0.3977 -0.5494 6 6 4.6782 0.4198 0.5622 7 6 5.8553 0.9459 1.2697 8 8 6.9736 0.6613 0.8849 9 7 5.6949 1.7433 2.3443 10 6 6.8676 2.2678 3.0486 11 6 6.4143 3.2368 4.1426 12 7 6.0664 2.6225 5.4262 13 6 7.0161 2.0072 6.1583 14 8 8.1377 1.8820 5.7143 15 6 6.6843 1.4749 7.5286 16 16 8.1572 0.7109 8.2519 17 6 7.5016 0.1899 9.8022 18 1 6.4666 0.3827 10.0430 19 6 8.3155 -0.4673 10.7143 20 7 9.5772 -0.7019 10.4210 21 14 7.6207 -1.0191 12.3582 22 1 6.1880 -0.6379 12.4429 23 1 7.7493 -2.4934 12.4801 24 1 8.3726 -0.3639 13.4584 25 6 7.0663 4.6204 4.1752 26 6 5.6162 4.4681 3.7093 27 7 3.3691 0.6614 0.8892 28 1 3.0624 1.2097 1.6282 29 1 3.0469 -1.2786 -1.7235 30 1 5.5811 -0.7647 -1.0551 31 1 4.8032 1.9706 2.6509 32 1 7.5111 2.7925 2.3425 33 1 7.4194 1.4431 3.4996 34 1 5.1524 2.6585 5.7493 35 1 6.3503 2.2939 8.1655 36 1 5.8916 0.7312 7.4473 37 1 10.1459 -1.1615 11.0583 38 1 7.2364 5.0737 5.1518 39 1 7.8178 4.8407 3.4171 40 1 5.4145 4.5882 2.6449 41 1 4.8320 4.8209 4.3791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689578242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:06 Heat of formation + Delta-G solvation = 34.273598 kcal Electronic energy + Delta-G solvation = -26211.988227 eV Core-core repulsion = 22220.288432 eV Total energy + Delta-G solvation = -3991.699794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97610 -40.21068 -39.19395 -37.46323 -36.98523 -34.63043 -32.88796 -32.47348 -31.85276 -30.60066 -29.14546 -27.48351 -25.53760 -24.15654 -23.00687 -21.83731 -21.46327 -20.90493 -20.35605 -19.58941 -18.02637 -17.89198 -16.80576 -16.49976 -15.95310 -15.81700 -15.44504 -15.07531 -14.97067 -14.84761 -14.64819 -14.44530 -14.13002 -13.99101 -13.65886 -13.52123 -13.37819 -13.28574 -12.91446 -12.84293 -12.74867 -12.53318 -12.08349 -11.89196 -11.19144 -11.10650 -11.07142 -10.87512 -10.77249 -10.41951 -9.86168 -9.73638 -9.64917 -9.34842 -9.13687 -9.07716 -8.85633 -8.29559 -6.55661 -6.26444 -3.97539 0.43735 1.65302 1.67626 2.47416 2.57301 2.79077 2.88259 2.92418 2.92621 3.18188 3.21966 3.27436 3.39312 3.42147 3.56040 4.15130 4.17186 4.26629 4.48120 4.57319 4.58975 4.70421 4.96893 5.08985 5.18805 5.23464 5.31337 5.36683 5.53786 5.59243 5.61087 5.76063 5.77020 5.81076 5.88523 5.97489 6.03945 6.16365 6.45739 6.49194 6.83961 7.02351 7.51353 7.55311 7.73267 8.30369 8.47216 9.19078 10.80941 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.002140 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.233167 B =13079.696609 C =14068.931467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.274 3.726 3 C 0.088 3.912 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.000 4.000 7 C 0.584 3.416 8 O -0.512 6.512 9 N -0.724 5.724 10 C 0.150 3.850 11 C 0.087 3.913 12 N -0.711 5.711 13 C 0.535 3.465 14 O -0.503 6.503 15 C -0.153 4.153 16 S -0.057 6.057 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.866 5.866 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.155 4.155 26 C -0.172 4.172 27 N -0.515 5.515 28 H 0.422 0.578 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.393 0.607 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 8.389 -20.854 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.042 4.042 3 C -0.029 4.029 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.118 4.118 7 C 0.370 3.630 8 O -0.386 6.386 9 N -0.375 5.375 10 C 0.026 3.974 11 C -0.002 4.002 12 N -0.366 5.366 13 C 0.321 3.679 14 O -0.376 6.376 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.501 5.501 21 Si 0.745 3.255 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.194 4.194 26 C -0.210 4.210 27 N -0.113 5.113 28 H 0.261 0.739 29 H 0.177 0.823 30 H 0.181 0.819 31 H 0.226 0.774 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.046 8.009 -21.622 26.493 hybrid contribution -2.456 0.206 2.455 3.478 sum -15.502 8.215 -19.167 25.984 Atomic orbital electron populations 1.81358 1.11201 1.07904 1.06679 1.24319 0.90813 0.94333 0.94733 1.15571 0.83151 1.06189 0.97999 1.21310 0.91558 1.02067 1.00125 1.21330 0.97820 0.98980 0.95663 1.20716 0.82151 1.07288 1.01618 1.17050 0.87341 0.78693 0.79957 1.90909 1.23677 1.58032 1.65959 1.45909 1.10236 1.50902 1.30433 1.21182 0.86635 0.97812 0.91760 1.20649 1.06010 0.87316 0.86199 1.45451 1.12286 1.59440 1.19433 1.20381 0.84601 0.76690 0.86196 1.90720 1.21099 1.54578 1.71174 1.23537 1.07737 1.03899 0.95241 1.85443 1.08068 1.72350 1.17162 1.22891 0.99457 1.43981 1.02142 0.90912 1.24998 0.94669 0.95148 0.98784 1.70025 1.05170 1.39104 1.35841 0.86113 0.78959 0.78454 0.81948 1.19657 1.20518 1.20535 1.23370 0.95135 0.96923 1.03943 1.23347 0.96050 0.99167 1.02441 1.41860 1.05258 1.39000 1.25169 0.73925 0.82288 0.81924 0.77363 0.89674 0.88735 0.76535 0.89195 0.89310 0.92171 0.87720 0.87592 0.87669 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -3.75 18.54 41.84 0.78 -2.98 16 2 C 0.27 1.95 15.89 -22.47 -0.36 1.59 16 3 C 0.09 0.50 6.93 -83.82 -0.58 -0.08 16 4 C -0.12 -0.66 10.80 -39.22 -0.42 -1.08 16 5 C -0.11 -0.77 10.60 -39.25 -0.42 -1.18 16 6 C 0.00 0.00 7.04 -82.03 -0.58 -0.58 16 7 C 0.58 5.76 7.80 -12.68 -0.10 5.66 16 8 O -0.51 -7.20 16.87 5.24 0.09 -7.11 16 9 N -0.72 -5.73 5.44 -61.49 -0.33 -6.06 16 10 C 0.15 1.60 5.63 -4.03 -0.02 1.58 16 11 C 0.09 0.81 1.79 -131.82 -0.24 0.57 16 12 N -0.71 -7.79 5.45 -47.61 -0.26 -8.05 16 13 C 0.53 8.97 7.66 -10.98 -0.08 8.88 16 14 O -0.50 -10.48 14.64 5.56 0.08 -10.40 16 15 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 16 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 17 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 21 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.15 -1.36 10.11 -26.70 -0.27 -1.63 16 26 C -0.17 -1.01 9.94 -26.70 -0.27 -1.27 16 27 N -0.52 -2.50 6.02 -6.96 -0.04 -2.54 16 28 H 0.42 0.93 8.15 -40.82 -0.33 0.60 16 29 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.39 1.86 7.47 -40.82 -0.30 1.55 16 32 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16 33 H 0.09 1.41 6.83 -51.93 -0.35 1.06 16 34 H 0.40 3.15 8.83 -40.82 -0.36 2.78 16 35 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 36 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -37.21 387.14 -7.96 -45.16 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.68 Total: 1.68 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.91 Total: -2.86 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.87 Total: -44.67 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.21 -7.96 -45.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689578242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.436 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds