Wall clock time and date at job start Wed Apr 1 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47019 * 240.00431 * 3 2 1 5 5 H 1.48503 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46878 * 120.00035 * 3 2 1 7 7 C 1.38804 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99644 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99849 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47239 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99752 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00376 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00232 * 174.56684 * 13 11 10 15 15 C 1.52996 * 109.52164 * 304.14793 * 14 13 11 16 16 O 1.42904 * 109.47281 * 305.45351 * 15 14 13 17 17 C 1.53120 * 109.52130 * 183.95834 * 14 13 11 18 18 C 1.53036 * 109.28086 * 297.74689 * 17 14 13 19 19 N 1.46849 * 109.52100 * 300.82672 * 18 17 14 20 20 C 1.46907 * 110.99890 * 185.83728 * 19 18 17 21 21 C 1.50699 * 109.46667 * 45.78682 * 20 19 18 22 22 C 1.31164 * 119.99712 * 125.00510 * 21 20 19 23 23 Cl 1.73602 * 120.00006 * 179.97438 * 22 21 20 24 24 C 1.46844 * 111.19951 * 61.73934 * 19 18 17 25 25 C 1.53036 * 109.52638 * 298.25681 * 24 19 18 26 26 H 0.96997 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46959 * 60.00091 * 10 9 7 28 28 H 1.09006 * 109.47264 * 300.00192 * 10 9 7 29 29 H 0.97006 * 119.99700 * 354.84383 * 13 11 10 30 30 H 1.09005 * 109.47394 * 65.45236 * 15 14 13 31 31 H 1.08999 * 109.47614 * 185.45769 * 15 14 13 32 32 H 0.96696 * 114.00138 * 179.97438 * 16 15 14 33 33 H 1.08997 * 109.50259 * 57.69044 * 17 14 13 34 34 H 1.09000 * 109.50188 * 177.80743 * 17 14 13 35 35 H 1.08988 * 109.46467 * 180.80896 * 18 17 14 36 36 H 1.09007 * 109.45876 * 60.83660 * 18 17 14 37 37 H 1.08993 * 109.46796 * 165.78700 * 20 19 18 38 38 H 1.09003 * 109.46715 * 285.79076 * 20 19 18 39 39 H 1.08000 * 120.00468 * 304.99405 * 21 20 19 40 40 H 1.08001 * 120.00026 * 359.97438 * 22 21 20 41 41 H 1.09007 * 109.46042 * 178.23822 * 24 19 18 42 42 H 1.08999 * 109.46445 * 58.27423 * 24 19 18 43 43 H 1.09010 * 109.49901 * 299.24001 * 25 24 19 44 44 H 1.09001 * 109.50554 * 179.12382 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0037 14 6 2.3349 -7.7116 0.1156 15 6 1.4878 -7.8331 1.3838 16 8 2.2530 -7.4015 2.5109 17 6 3.5101 -8.6904 0.1879 18 6 4.3182 -8.6064 -1.1090 19 7 3.4527 -8.9359 -2.2487 20 6 4.2264 -9.0006 -3.4959 21 6 5.4871 -9.7930 -3.2643 22 6 5.7598 -10.8279 -4.0225 23 17 7.2125 -11.7404 -3.7562 24 6 2.3434 -7.9810 -2.3665 25 6 1.4763 -8.0463 -1.1072 26 1 -0.4850 0.8400 0.0004 27 1 3.1251 -3.7317 0.8875 28 1 3.1239 -3.7309 -0.8925 29 1 3.7984 -6.1856 -0.0792 30 1 0.5987 -7.2097 1.2881 31 1 1.1897 -8.8721 1.5236 32 1 1.7775 -7.4511 3.3514 33 1 4.1487 -8.4306 1.0321 34 1 3.1316 -9.7046 0.3157 35 1 5.1474 -9.3125 -1.0667 36 1 4.7079 -7.5955 -1.2293 37 1 3.6297 -9.4848 -4.2688 38 1 4.4852 -7.9911 -3.8156 39 1 6.1662 -9.5087 -2.4741 40 1 5.0806 -11.1124 -4.8126 41 1 1.7383 -8.2329 -3.2376 42 1 2.7423 -6.9731 -2.4809 43 1 1.0658 -9.0505 -0.9997 44 1 0.6619 -7.3264 -1.1883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700333915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:10 Heat of formation + Delta-G solvation = -67.694136 kcal Electronic energy + Delta-G solvation = -26498.993720 eV Core-core repulsion = 22603.979766 eV Total energy + Delta-G solvation = -3895.013953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64887 -38.48100 -37.14813 -36.72084 -35.20719 -33.30109 -32.42977 -31.61395 -31.13159 -28.77205 -27.54528 -25.47468 -24.81512 -23.76062 -22.04989 -20.96675 -20.10665 -19.02831 -17.89563 -17.29052 -16.87842 -16.53603 -15.95396 -15.55660 -15.42247 -15.01210 -14.80739 -14.54424 -14.30350 -14.07602 -14.01691 -13.65128 -13.31013 -13.11701 -12.95083 -12.71613 -12.56637 -12.29766 -12.03622 -11.89622 -11.82458 -11.56464 -11.33878 -11.18640 -11.04454 -11.04335 -10.84904 -10.76748 -10.46485 -10.01851 -9.81450 -9.60826 -9.09693 -9.06196 -8.84404 -8.50205 -8.23795 -6.49190 -6.21887 -3.91833 1.44168 1.91360 3.03032 3.14321 3.22987 3.27088 3.31127 3.65037 3.74897 4.14525 4.20807 4.33905 4.54015 4.60271 4.63773 4.91123 4.95984 5.03484 5.11591 5.13237 5.20497 5.23477 5.31820 5.36271 5.43170 5.60197 5.61195 5.64547 5.76146 5.77425 5.86899 5.88975 5.91713 5.95796 5.98438 6.15383 6.19350 6.70265 6.75463 6.80179 7.59174 7.64722 7.79208 8.34900 8.67102 9.23504 10.85435 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.002295 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.084208 B =12197.005937 C =13337.999783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.541 3.459 12 O -0.519 6.519 13 N -0.721 5.721 14 C 0.187 3.813 15 C 0.062 3.938 16 O -0.567 6.567 17 C -0.114 4.114 18 C 0.047 3.953 19 N -0.532 5.532 20 C 0.086 3.914 21 C -0.140 4.140 22 C -0.099 4.099 23 Cl -0.097 7.097 24 C 0.060 3.940 25 C -0.126 4.126 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.395 0.605 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.377 0.623 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.147 0.853 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -23.390 -4.310 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.327 3.673 12 O -0.395 6.395 13 N -0.375 5.375 14 C 0.100 3.900 15 C -0.016 4.016 16 O -0.372 6.372 17 C -0.152 4.152 18 C -0.080 4.080 19 N -0.257 5.257 20 C -0.041 4.041 21 C -0.159 4.159 22 C -0.144 4.144 23 Cl -0.068 7.068 24 C -0.067 4.067 25 C -0.165 4.165 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.229 0.771 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.553 -24.053 -4.657 25.950 hybrid contribution 2.490 2.007 0.285 3.211 sum 11.043 -22.046 -4.372 25.042 Atomic orbital electron populations 1.70004 1.05922 1.27525 1.46884 1.24984 0.95025 0.98984 0.94566 0.86239 0.79255 0.81298 0.78800 1.19970 1.20808 1.19944 1.22832 0.94856 0.91760 1.58934 0.91085 1.85311 1.04949 0.96194 1.96701 1.23534 1.06497 0.95738 1.04644 1.20159 0.86486 0.86069 0.74563 1.90612 1.15399 1.85438 1.48007 1.45975 1.09910 1.04950 1.76661 1.20289 0.94022 0.82213 0.93494 1.22618 0.95077 0.98297 0.85640 1.86426 1.43595 1.89536 1.17603 1.21822 0.96677 0.99626 0.97041 1.22241 0.95669 0.99510 0.90622 1.62173 1.10545 1.50383 1.02597 1.21120 0.91435 0.98531 0.93057 1.23195 0.98138 0.95657 0.98917 1.24393 0.91149 0.95937 1.02915 1.98376 1.37994 1.74390 1.96078 1.22045 0.92353 0.93689 0.98629 1.21972 0.98798 1.03144 0.92594 0.92159 0.89316 0.89729 0.77095 0.90857 0.93576 0.77650 0.90039 0.89833 0.90021 0.94579 0.89715 0.92871 0.85749 0.83557 0.90443 0.94070 0.90501 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.54 9.73 7.26 -10.99 -0.08 9.65 16 12 O -0.52 -10.84 12.17 5.55 0.07 -10.77 16 13 N -0.72 -9.65 3.96 -47.50 -0.19 -9.84 16 14 C 0.19 2.16 0.44 -131.70 -0.06 2.11 16 15 C 0.06 0.77 5.56 37.16 0.21 0.97 16 16 O -0.57 -7.03 13.03 -35.23 -0.46 -7.49 16 17 C -0.11 -1.05 4.82 -26.65 -0.13 -1.18 16 18 C 0.05 0.40 4.84 -3.83 -0.02 0.38 16 19 N -0.53 -4.67 4.80 -236.11 -1.13 -5.80 16 20 C 0.09 0.63 5.72 -4.97 -0.03 0.60 16 21 C -0.14 -0.95 8.29 -36.07 -0.30 -1.25 16 22 C -0.10 -0.65 10.43 28.97 0.30 -0.34 16 23 Cl -0.10 -0.73 29.10 -51.86 -1.51 -2.24 16 24 C 0.06 0.62 5.28 -3.84 -0.02 0.60 16 25 C -0.13 -1.46 4.77 -26.65 -0.13 -1.59 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 28 H 0.08 1.59 8.14 -51.91 -0.42 1.17 16 29 H 0.39 4.59 7.36 -40.82 -0.30 4.28 16 30 H 0.07 1.11 6.25 -51.93 -0.32 0.79 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.38 3.30 9.12 45.56 0.42 3.72 16 33 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.61 5.79 -51.94 -0.30 0.31 16 36 H 0.04 0.32 6.94 -51.92 -0.36 -0.05 16 37 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 38 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 39 H 0.12 0.84 6.48 -52.49 -0.34 0.50 16 40 H 0.15 0.73 7.84 -52.49 -0.41 0.32 16 41 H 0.08 0.74 8.12 -51.92 -0.42 0.32 16 42 H 0.04 0.49 7.69 -51.93 -0.40 0.09 16 43 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.10 1.39 6.26 -51.93 -0.33 1.07 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -33.56 378.73 -9.51 -43.07 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.66 Total: 5.98 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 0.17 Total: -5.88 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.59 Total: -40.99 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.39 Total: -18.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.51 Total: -2.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.56 -9.51 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700333915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.628 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds