Wall clock time and date at job start Wed Apr 1 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47019 * 240.00431 * 3 2 1 5 5 H 1.48503 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46878 * 120.00035 * 3 2 1 7 7 C 1.38804 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99644 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99849 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47239 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99752 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00376 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00232 * 174.56684 * 13 11 10 15 15 C 1.52996 * 109.52164 * 304.14793 * 14 13 11 16 16 O 1.42904 * 109.47281 * 305.45351 * 15 14 13 17 17 C 1.53120 * 109.52130 * 183.95834 * 14 13 11 18 18 C 1.53036 * 109.28086 * 297.74689 * 17 14 13 19 19 N 1.46849 * 109.52100 * 300.82672 * 18 17 14 20 20 C 1.46907 * 110.99890 * 185.83728 * 19 18 17 21 21 C 1.50699 * 109.46667 * 45.78682 * 20 19 18 22 22 C 1.31164 * 119.99712 * 125.00510 * 21 20 19 23 23 Cl 1.73602 * 120.00006 * 179.97438 * 22 21 20 24 24 C 1.46844 * 111.19951 * 61.73934 * 19 18 17 25 25 C 1.53036 * 109.52638 * 298.25681 * 24 19 18 26 26 H 0.96997 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46959 * 60.00091 * 10 9 7 28 28 H 1.09006 * 109.47264 * 300.00192 * 10 9 7 29 29 H 0.97006 * 119.99700 * 354.84383 * 13 11 10 30 30 H 1.09005 * 109.47394 * 65.45236 * 15 14 13 31 31 H 1.08999 * 109.47614 * 185.45769 * 15 14 13 32 32 H 0.96696 * 114.00138 * 179.97438 * 16 15 14 33 33 H 1.08997 * 109.50259 * 57.69044 * 17 14 13 34 34 H 1.09000 * 109.50188 * 177.80743 * 17 14 13 35 35 H 1.08988 * 109.46467 * 180.80896 * 18 17 14 36 36 H 1.09007 * 109.45876 * 60.83660 * 18 17 14 37 37 H 1.08993 * 109.46796 * 165.78700 * 20 19 18 38 38 H 1.09003 * 109.46715 * 285.79076 * 20 19 18 39 39 H 1.08000 * 120.00468 * 304.99405 * 21 20 19 40 40 H 1.08001 * 120.00026 * 359.97438 * 22 21 20 41 41 H 1.09007 * 109.46042 * 178.23822 * 24 19 18 42 42 H 1.08999 * 109.46445 * 58.27423 * 24 19 18 43 43 H 1.09010 * 109.49901 * 299.24001 * 25 24 19 44 44 H 1.09001 * 109.50554 * 179.12382 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0037 14 6 2.3349 -7.7116 0.1156 15 6 1.4878 -7.8331 1.3838 16 8 2.2530 -7.4015 2.5109 17 6 3.5101 -8.6904 0.1879 18 6 4.3182 -8.6064 -1.1090 19 7 3.4527 -8.9359 -2.2487 20 6 4.2264 -9.0006 -3.4959 21 6 5.4871 -9.7930 -3.2643 22 6 5.7598 -10.8279 -4.0225 23 17 7.2125 -11.7404 -3.7562 24 6 2.3434 -7.9810 -2.3665 25 6 1.4763 -8.0463 -1.1072 26 1 -0.4850 0.8400 0.0004 27 1 3.1251 -3.7317 0.8875 28 1 3.1239 -3.7309 -0.8925 29 1 3.7984 -6.1856 -0.0792 30 1 0.5987 -7.2097 1.2881 31 1 1.1897 -8.8721 1.5236 32 1 1.7775 -7.4511 3.3514 33 1 4.1487 -8.4306 1.0321 34 1 3.1316 -9.7046 0.3157 35 1 5.1474 -9.3125 -1.0667 36 1 4.7079 -7.5955 -1.2293 37 1 3.6297 -9.4848 -4.2688 38 1 4.4852 -7.9911 -3.8156 39 1 6.1662 -9.5087 -2.4741 40 1 5.0806 -11.1124 -4.8126 41 1 1.7383 -8.2329 -3.2376 42 1 2.7423 -6.9731 -2.4809 43 1 1.0658 -9.0505 -0.9997 44 1 0.6619 -7.3264 -1.1883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700333915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:10 Heat of formation + Delta-G solvation = -93.199871 kcal Electronic energy + Delta-G solvation = -26500.099731 eV Core-core repulsion = 22603.979766 eV Total energy + Delta-G solvation = -3896.119965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70202 -39.53929 -37.94886 -37.48986 -36.09580 -34.59438 -34.20541 -32.67395 -31.92389 -30.18648 -28.43256 -27.64641 -25.54057 -24.54318 -22.97168 -22.10979 -20.73719 -20.09075 -19.84932 -18.23510 -18.00039 -17.42009 -17.06603 -16.88650 -16.55166 -16.31282 -16.03396 -15.90243 -15.32244 -15.20474 -14.90481 -14.69705 -14.56595 -14.37701 -14.12834 -13.70071 -13.51059 -13.24866 -13.17809 -13.00938 -12.89067 -12.85601 -12.67508 -12.53082 -12.29365 -12.17847 -11.74816 -11.73413 -11.70614 -11.34463 -11.14092 -11.08087 -10.42368 -10.28114 -10.17329 -10.00205 -9.23356 -8.65564 -8.35413 -6.12517 0.92939 1.26565 1.39314 1.42269 1.45705 1.55857 1.69087 2.25407 2.31929 2.97896 2.98347 3.24793 3.31557 3.64114 3.74090 3.90489 3.99061 4.05865 4.21133 4.25822 4.28192 4.33350 4.41744 4.46872 4.49088 4.53342 4.55998 4.66093 4.74034 4.86367 4.91388 4.96018 5.03379 5.18673 5.20769 5.27455 5.38319 5.40308 5.63164 6.01825 6.06295 6.18484 6.57095 6.84040 7.05811 7.31407 8.73338 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.002295 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.084208 B =12197.005937 C =13337.999783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.079 0.921 9 S -0.139 6.139 10 C -0.131 4.131 11 C 0.543 3.457 12 O -0.552 6.552 13 N -0.699 5.699 14 C 0.182 3.818 15 C 0.064 3.936 16 O -0.579 6.579 17 C -0.103 4.103 18 C 0.047 3.953 19 N -0.530 5.530 20 C 0.087 3.913 21 C -0.142 4.142 22 C -0.096 4.096 23 Cl -0.107 7.107 24 C 0.066 3.934 25 C -0.122 4.122 26 H 0.271 0.729 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.406 0.594 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.392 0.608 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.034 0.966 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.125 0.875 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.092 0.908 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.703 -24.506 -4.582 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.697 4.697 8 H 0.097 0.903 9 S 0.088 5.912 10 C -0.283 4.283 11 C 0.328 3.672 12 O -0.430 6.430 13 N -0.353 5.353 14 C 0.096 3.904 15 C -0.015 4.015 16 O -0.386 6.386 17 C -0.141 4.141 18 C -0.081 4.081 19 N -0.255 5.255 20 C -0.040 4.040 21 C -0.161 4.161 22 C -0.141 4.141 23 Cl -0.079 7.079 24 C -0.062 4.062 25 C -0.161 4.161 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.243 0.757 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.180 0.820 41 H 0.102 0.898 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.936 -25.209 -4.921 27.916 hybrid contribution 1.778 2.218 0.376 2.867 sum 12.714 -22.991 -4.545 26.663 Atomic orbital electron populations 1.70165 1.07864 1.28656 1.47912 1.26099 0.95977 1.03205 0.93758 0.85039 0.77865 0.75870 0.79443 1.18708 1.20247 1.18794 1.23169 0.95241 0.92318 1.58978 0.90322 1.85434 1.10088 0.98728 1.96987 1.23381 1.03629 0.95388 1.05865 1.19799 0.86350 0.86098 0.74905 1.90621 1.16842 1.85710 1.49825 1.45773 1.09925 1.04883 1.74684 1.20527 0.95171 0.81314 0.93356 1.22571 0.93876 0.99028 0.85986 1.86376 1.44097 1.89729 1.18433 1.21759 0.95525 0.99142 0.97645 1.22287 0.95820 0.99924 0.90019 1.62174 1.10530 1.49386 1.03436 1.21138 0.91647 0.98654 0.92536 1.23129 0.97951 0.95764 0.99286 1.24596 0.90765 0.95555 1.03143 1.98379 1.38747 1.74608 1.96139 1.21931 0.92864 0.93203 0.98182 1.21881 0.98083 1.02896 0.93237 0.91972 0.88285 0.88092 0.75748 0.94357 0.90903 0.75963 0.89787 0.88682 0.88419 0.94800 0.88663 0.93144 0.85679 0.81983 0.89791 0.95854 0.88986 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.55 -31.60 9.50 67.96 0.65 -30.95 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 9 S -0.14 -7.73 20.57 -56.49 -1.16 -8.89 16 10 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 11 C 0.54 19.72 7.26 87.66 0.64 20.35 16 12 O -0.55 -23.94 12.17 -3.05 -0.04 -23.98 16 13 N -0.70 -18.13 3.96 -422.58 -1.67 -19.80 16 14 C 0.18 4.01 0.44 3.68 0.00 4.01 16 15 C 0.06 1.52 5.56 71.98 0.40 1.92 16 16 O -0.58 -13.67 13.03 -148.98 -1.94 -15.61 16 17 C -0.10 -1.63 4.82 30.65 0.15 -1.49 16 18 C 0.05 0.67 4.84 86.32 0.42 1.09 16 19 N -0.53 -8.09 4.80 -900.92 -4.32 -12.42 16 20 C 0.09 1.07 5.72 85.56 0.49 1.56 16 21 C -0.14 -1.58 8.29 25.48 0.21 -1.37 16 22 C -0.10 -1.02 10.43 67.62 0.71 -0.32 16 23 Cl -0.11 -1.43 29.10 -2.72 -0.08 -1.51 16 24 C 0.07 1.29 5.28 86.33 0.46 1.74 16 25 C -0.12 -2.75 4.77 30.64 0.15 -2.60 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 28 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 29 H 0.41 8.73 7.36 -92.70 -0.68 8.05 16 30 H 0.04 1.20 6.25 -2.38 -0.01 1.18 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.39 6.48 9.12 -74.06 -0.68 5.80 16 33 H 0.08 1.35 7.92 -2.39 -0.02 1.33 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.14 5.79 -2.39 -0.01 1.12 16 36 H 0.03 0.51 6.94 -2.38 -0.02 0.49 16 37 H 0.10 0.98 7.79 -2.39 -0.02 0.96 16 38 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 39 H 0.13 1.37 6.48 -2.91 -0.02 1.36 16 40 H 0.16 1.18 7.84 -2.91 -0.02 1.16 16 41 H 0.08 1.52 8.12 -2.38 -0.02 1.50 16 42 H 0.02 0.54 7.69 -2.39 -0.02 0.52 16 43 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.06 1.88 6.26 -2.39 -0.01 1.86 16 Total: -1.00 -74.39 378.73 -2.07 -76.46 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.32 Total: 25.13 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.16 Total: -9.62 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -5.71 Total: -87.76 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.98 Total: -39.59 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.89 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -74.39 -2.07 -76.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700333915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.744 kcal (2) G-P(sol) polarization free energy of solvation -74.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds