Wall clock time and date at job start Wed Apr 1 2020 04:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48497 * 109.47289 * 240.00022 * 3 2 1 5 5 H 1.48495 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46694 * 120.00153 * 3 2 1 7 7 C 1.38811 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99974 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99789 * 0.27466 * 7 2 1 10 10 C 1.46501 * 120.00258 * 179.72453 * 9 7 2 11 11 C 1.52991 * 109.47548 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.85394 * 43.79774 * 11 10 9 13 13 C 1.53782 * 113.61821 * 175.00212 * 11 10 9 14 14 C 1.53775 * 87.08449 * 139.97836 * 13 11 10 15 15 H 1.09001 * 113.61385 * 220.01989 * 14 13 11 16 16 N 1.46501 * 113.61557 * 89.19845 * 14 13 11 17 17 C 1.34778 * 119.99906 * 154.99755 * 16 14 13 18 18 O 1.21789 * 120.00043 * 354.76610 * 17 16 14 19 19 C 1.41658 * 119.99989 * 174.76567 * 17 16 14 20 20 C 1.38715 * 126.80494 * 266.64044 * 19 17 16 21 21 Cl 1.73602 * 125.91202 * 0.02562 * 20 19 17 22 22 N 1.32419 * 108.17457 * 179.97438 * 20 19 17 23 23 C 1.33207 * 109.82887 * 0.02562 * 22 20 19 24 24 C 1.40660 * 131.77774 * 180.02562 * 23 22 20 25 25 C 1.36291 * 119.38445 * 179.18674 * 24 23 22 26 26 C 1.40173 * 119.60934 * 0.66437 * 25 24 23 27 27 C 1.35263 * 120.12040 * 359.58999 * 26 25 24 28 28 N 1.35949 * 120.64239 * 359.96984 * 27 26 25 29 29 C 1.53783 * 87.08252 * 334.56724 * 14 13 11 30 30 H 0.97006 * 120.00468 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00068 * 359.72167 * 9 7 2 32 32 H 1.09000 * 109.46859 * 300.00245 * 10 9 7 33 33 H 1.09005 * 109.46817 * 59.99511 * 10 9 7 34 34 H 1.09002 * 113.61309 * 254.53309 * 13 11 10 35 35 H 1.09000 * 113.61324 * 25.42847 * 13 11 10 36 36 H 0.96999 * 120.00147 * 335.00755 * 16 14 13 37 37 H 1.08001 * 120.30364 * 359.96034 * 24 23 22 38 38 H 1.08002 * 120.19681 * 180.22685 * 25 24 23 39 39 H 1.07998 * 119.93768 * 179.55622 * 26 25 24 40 40 H 1.08000 * 119.67728 * 179.97438 * 27 26 25 41 41 H 1.09001 * 113.61384 * 270.88532 * 29 14 13 42 42 H 1.08996 * 113.61473 * 139.98012 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0068 10 6 2.0581 -3.6567 -0.0134 11 6 1.0640 -4.8196 -0.0202 12 1 0.2381 -4.6665 -0.7148 13 6 1.7306 -6.1993 -0.1502 14 6 0.7047 -6.7047 0.8778 15 1 1.1230 -7.3980 1.6075 16 7 -0.5377 -7.1940 0.2752 17 6 -1.2942 -8.0971 0.9300 18 8 -0.8991 -8.5777 1.9770 19 6 -2.5488 -8.4872 0.4005 20 6 -3.7857 -7.9365 0.7022 21 17 -4.0764 -6.6307 1.8086 22 7 -4.7062 -8.5786 -0.0005 23 6 -4.1303 -9.5211 -0.7452 24 6 -4.6638 -10.4569 -1.6497 25 6 -3.8248 -11.3116 -2.3002 26 6 -2.4470 -11.2551 -2.0484 27 6 -1.9538 -10.3515 -1.1710 28 7 -2.7828 -9.4894 -0.5246 29 6 0.6165 -5.2556 1.3851 30 1 -0.4851 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0067 32 1 2.6848 -3.7097 -0.9037 33 1 2.6848 -3.7190 0.8763 34 1 1.6171 -6.6477 -1.1372 35 1 2.7588 -6.2232 0.2109 36 1 -0.8159 -6.8682 -0.5950 37 1 -5.7270 -10.4894 -1.8364 38 1 -4.2199 -12.0329 -3.0003 39 1 -1.7781 -11.9347 -2.5556 40 1 -0.8911 -10.3146 -0.9821 41 1 1.3401 -5.0216 2.1660 42 1 -0.3965 -4.9423 1.6376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717653219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:54 Heat of formation + Delta-G solvation = 89.801391 kcal Electronic energy + Delta-G solvation = -27113.111235 eV Core-core repulsion = 23121.775600 eV Total energy + Delta-G solvation = -3991.335635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.42345 -40.28741 -38.51151 -37.92745 -36.80219 -34.58687 -34.31493 -33.21941 -30.97924 -30.75415 -29.69129 -26.88222 -25.55739 -24.87495 -24.07228 -23.28521 -22.79488 -21.48489 -21.13785 -19.17621 -18.80499 -17.60688 -17.27039 -17.03002 -16.76283 -16.22914 -15.97818 -15.49803 -14.96390 -14.85862 -14.62412 -14.56201 -13.97582 -13.87790 -13.34370 -13.20670 -13.07676 -12.77372 -12.48683 -12.42179 -12.17933 -11.70921 -11.64549 -11.62632 -11.54623 -11.04234 -10.86051 -10.80502 -10.52871 -10.38971 -10.26872 -10.12684 -9.85846 -9.62030 -9.24365 -9.15593 -8.83446 -8.43439 -6.89051 -5.74016 -3.02519 0.12489 0.44320 1.23169 1.71153 1.99346 2.39070 2.90983 3.04482 3.45241 3.49431 3.50741 3.64758 4.00405 4.14433 4.33994 4.46144 4.52510 4.58200 4.65741 4.77852 4.87620 5.05407 5.09909 5.14118 5.38432 5.51492 5.58512 5.59475 5.63268 5.78229 5.81690 5.89473 5.95613 6.07867 6.17902 6.26835 6.32435 6.40209 6.55724 6.77343 6.91743 7.06527 7.19458 7.71092 7.83998 8.44979 9.55843 10.14962 10.49261 11.48787 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.002342 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.582263 B =11950.989096 C =12558.137319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.136 4.136 14 C 0.112 3.888 15 H 0.103 0.897 16 N -0.692 5.692 17 C 0.602 3.398 18 O -0.515 6.515 19 C -0.114 4.114 20 C 0.169 3.831 21 Cl 0.029 6.971 22 N -0.480 5.480 23 C 0.251 3.749 24 C -0.079 4.079 25 C -0.089 4.089 26 C -0.131 4.131 27 C 0.060 3.940 28 N -0.328 5.328 29 C -0.138 4.138 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.404 0.596 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.093 0.907 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -27.878 -5.507 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.007 3.993 15 H 0.121 0.879 16 N -0.343 5.343 17 C 0.385 3.615 18 O -0.389 6.389 19 C -0.230 4.230 20 C 0.004 3.996 21 Cl 0.057 6.943 22 N -0.201 5.201 23 C 0.010 3.990 24 C -0.099 4.099 25 C -0.113 4.113 26 C -0.151 4.151 27 C -0.063 4.063 28 N 0.001 4.999 29 C -0.177 4.177 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.112 0.888 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.004 -27.769 -4.567 29.000 hybrid contribution 0.721 1.221 -0.337 1.458 sum -6.283 -26.547 -4.904 27.718 Atomic orbital electron populations 1.69649 1.05099 1.25736 1.57735 1.24742 0.95520 0.97682 1.03103 0.86272 0.78516 0.83605 0.77819 1.21314 1.21693 1.21282 1.19184 0.90968 0.84271 1.42704 0.91315 1.42339 1.05847 0.99967 1.89420 1.20625 0.92956 0.85218 0.97663 1.22773 0.99142 0.94235 0.97117 0.89406 1.23309 0.98859 0.96626 0.98668 1.22064 0.83966 0.96427 0.96851 0.87866 1.45779 1.23294 1.43022 1.22165 1.15345 0.81784 0.79833 0.84500 1.90894 1.70839 1.54642 1.22540 1.19491 0.96636 1.01016 1.05852 1.21257 0.87800 0.94370 0.96177 1.98451 1.96349 1.42066 1.57395 1.70178 1.30578 1.08356 1.10959 1.20783 0.79128 0.98721 1.00369 1.20393 1.01946 0.93179 0.94385 1.21182 0.92706 0.98542 0.98906 1.20962 0.96700 0.98954 0.98532 1.21758 0.96904 0.91916 0.95771 1.42489 1.09209 1.22052 1.26180 1.23423 1.02824 0.93604 0.97809 0.93480 0.78305 0.96462 0.96182 0.91318 0.88463 0.76113 0.82301 0.83193 0.82347 0.81533 0.88826 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.61 5.60 -59.91 -0.34 -18.95 16 10 C 0.16 3.20 6.10 -4.05 -0.02 3.18 16 11 C -0.11 -1.72 3.63 -89.81 -0.33 -2.05 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.14 -1.54 7.39 -25.92 -0.19 -1.73 16 14 C 0.11 1.35 4.35 -67.12 -0.29 1.06 16 15 H 0.10 1.29 7.41 -51.93 -0.38 0.91 16 16 N -0.69 -8.05 5.25 -55.89 -0.29 -8.34 16 17 C 0.60 8.10 7.14 -14.95 -0.11 7.99 16 18 O -0.52 -8.53 16.67 5.11 0.09 -8.44 16 19 C -0.11 -1.46 6.52 -83.42 -0.54 -2.01 16 20 C 0.17 2.36 7.77 -17.12 -0.13 2.23 16 21 Cl 0.03 0.40 29.11 -51.86 -1.51 -1.11 16 22 N -0.48 -6.46 11.25 -9.38 -0.11 -6.57 16 23 C 0.25 2.70 7.77 -156.05 -1.21 1.49 16 24 C -0.08 -0.52 10.10 -39.37 -0.40 -0.92 16 25 C -0.09 -0.36 10.07 -39.56 -0.40 -0.76 16 26 C -0.13 -0.54 10.00 -39.92 -0.40 -0.93 16 27 C 0.06 0.41 10.82 -16.79 -0.18 0.23 16 28 N -0.33 -3.41 2.96 -60.11 -0.18 -3.59 16 29 C -0.14 -2.02 7.43 -25.91 -0.19 -2.21 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.40 4.14 8.67 -40.82 -0.35 3.79 16 37 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 39 H 0.16 0.14 8.06 -52.49 -0.42 -0.28 16 40 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -35.78 377.90 -10.81 -46.59 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.22 Total: 6.86 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -4.65 Total: -1.90 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.19 Total: -65.31 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -1.51 Total: -1.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.78 -10.81 -46.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717653219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.392 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds