Wall clock time and date at job start Wed Apr 1 2020 04:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48497 * 109.47289 * 240.00022 * 3 2 1 5 5 H 1.48495 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46694 * 120.00153 * 3 2 1 7 7 C 1.38811 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99974 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99789 * 0.27466 * 7 2 1 10 10 C 1.46501 * 120.00258 * 179.72453 * 9 7 2 11 11 C 1.52991 * 109.47548 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.85394 * 43.79774 * 11 10 9 13 13 C 1.53782 * 113.61821 * 175.00212 * 11 10 9 14 14 C 1.53775 * 87.08449 * 139.97836 * 13 11 10 15 15 H 1.09001 * 113.61385 * 220.01989 * 14 13 11 16 16 N 1.46501 * 113.61557 * 89.19845 * 14 13 11 17 17 C 1.34778 * 119.99906 * 154.99755 * 16 14 13 18 18 O 1.21789 * 120.00043 * 354.76610 * 17 16 14 19 19 C 1.41658 * 119.99989 * 174.76567 * 17 16 14 20 20 C 1.38715 * 126.80494 * 266.64044 * 19 17 16 21 21 Cl 1.73602 * 125.91202 * 0.02562 * 20 19 17 22 22 N 1.32419 * 108.17457 * 179.97438 * 20 19 17 23 23 C 1.33207 * 109.82887 * 0.02562 * 22 20 19 24 24 C 1.40660 * 131.77774 * 180.02562 * 23 22 20 25 25 C 1.36291 * 119.38445 * 179.18674 * 24 23 22 26 26 C 1.40173 * 119.60934 * 0.66437 * 25 24 23 27 27 C 1.35263 * 120.12040 * 359.58999 * 26 25 24 28 28 N 1.35949 * 120.64239 * 359.96984 * 27 26 25 29 29 C 1.53783 * 87.08252 * 334.56724 * 14 13 11 30 30 H 0.97006 * 120.00468 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00068 * 359.72167 * 9 7 2 32 32 H 1.09000 * 109.46859 * 300.00245 * 10 9 7 33 33 H 1.09005 * 109.46817 * 59.99511 * 10 9 7 34 34 H 1.09002 * 113.61309 * 254.53309 * 13 11 10 35 35 H 1.09000 * 113.61324 * 25.42847 * 13 11 10 36 36 H 0.96999 * 120.00147 * 335.00755 * 16 14 13 37 37 H 1.08001 * 120.30364 * 359.96034 * 24 23 22 38 38 H 1.08002 * 120.19681 * 180.22685 * 25 24 23 39 39 H 1.07998 * 119.93768 * 179.55622 * 26 25 24 40 40 H 1.08000 * 119.67728 * 179.97438 * 27 26 25 41 41 H 1.09001 * 113.61384 * 270.88532 * 29 14 13 42 42 H 1.08996 * 113.61473 * 139.98012 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0068 10 6 2.0581 -3.6567 -0.0134 11 6 1.0640 -4.8196 -0.0202 12 1 0.2381 -4.6665 -0.7148 13 6 1.7306 -6.1993 -0.1502 14 6 0.7047 -6.7047 0.8778 15 1 1.1230 -7.3980 1.6075 16 7 -0.5377 -7.1940 0.2752 17 6 -1.2942 -8.0971 0.9300 18 8 -0.8991 -8.5777 1.9770 19 6 -2.5488 -8.4872 0.4005 20 6 -3.7857 -7.9365 0.7022 21 17 -4.0764 -6.6307 1.8086 22 7 -4.7062 -8.5786 -0.0005 23 6 -4.1303 -9.5211 -0.7452 24 6 -4.6638 -10.4569 -1.6497 25 6 -3.8248 -11.3116 -2.3002 26 6 -2.4470 -11.2551 -2.0484 27 6 -1.9538 -10.3515 -1.1710 28 7 -2.7828 -9.4894 -0.5246 29 6 0.6165 -5.2556 1.3851 30 1 -0.4851 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0067 32 1 2.6848 -3.7097 -0.9037 33 1 2.6848 -3.7190 0.8763 34 1 1.6171 -6.6477 -1.1372 35 1 2.7588 -6.2232 0.2109 36 1 -0.8159 -6.8682 -0.5950 37 1 -5.7270 -10.4894 -1.8364 38 1 -4.2199 -12.0329 -3.0003 39 1 -1.7781 -11.9347 -2.5556 40 1 -0.8911 -10.3146 -0.9821 41 1 1.3401 -5.0216 2.1660 42 1 -0.3965 -4.9423 1.6376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717653219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:53 Heat of formation + Delta-G solvation = 65.848399 kcal Electronic energy + Delta-G solvation = -27114.149914 eV Core-core repulsion = 23121.775600 eV Total energy + Delta-G solvation = -3992.374315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.15560 -41.35193 -39.59332 -38.68389 -37.71932 -36.36217 -35.05006 -34.46725 -32.83636 -31.42082 -30.51358 -28.47916 -26.65359 -25.85168 -24.97887 -24.61985 -23.63795 -22.92809 -22.01438 -20.39627 -19.63579 -19.06999 -18.23962 -18.03237 -17.58093 -17.02148 -16.82809 -16.67912 -16.20292 -15.94251 -15.75095 -15.51771 -15.36703 -15.12713 -15.02663 -14.42927 -14.06039 -13.77850 -13.48524 -13.39544 -13.12879 -12.94926 -12.91539 -12.68792 -12.60167 -12.39662 -12.25043 -12.17350 -11.93804 -11.87192 -11.67356 -11.39231 -11.29950 -11.17204 -10.85993 -10.22292 -9.97709 -9.13009 -8.97974 -7.94802 -5.23344 -0.41815 -0.18499 0.34704 0.79002 1.21302 1.46059 1.49494 1.50802 1.55639 2.12742 2.37694 2.56005 2.98956 3.37875 3.44917 3.49784 3.55690 3.56117 3.74690 3.88624 3.91740 3.93263 4.09622 4.32245 4.41112 4.52680 4.59401 4.73505 4.81672 4.84598 4.87326 4.90742 4.97259 5.00744 5.13201 5.13867 5.22247 5.30727 5.39448 5.48007 5.60310 5.71862 6.20466 6.27537 6.28545 6.84403 7.33311 8.12002 8.33563 9.28654 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.002342 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.582263 B =11950.989096 C =12558.137319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.114 4.114 12 H 0.080 0.920 13 C -0.110 4.110 14 C 0.123 3.877 15 H 0.106 0.894 16 N -0.681 5.681 17 C 0.612 3.388 18 O -0.553 6.553 19 C -0.138 4.138 20 C 0.151 3.849 21 Cl 0.010 6.990 22 N -0.519 5.519 23 C 0.241 3.759 24 C -0.101 4.101 25 C -0.059 4.059 26 C -0.106 4.106 27 C 0.031 3.969 28 N -0.327 5.327 29 C -0.144 4.144 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.412 0.588 37 H 0.176 0.824 38 H 0.196 0.804 39 H 0.203 0.797 40 H 0.180 0.820 41 H 0.091 0.909 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -30.845 -8.021 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.133 4.133 12 H 0.099 0.901 13 C -0.148 4.148 14 C 0.018 3.982 15 H 0.124 0.876 16 N -0.332 5.332 17 C 0.396 3.604 18 O -0.430 6.430 19 C -0.255 4.255 20 C -0.015 4.015 21 Cl 0.038 6.962 22 N -0.240 5.240 23 C 0.001 3.999 24 C -0.121 4.121 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.092 4.092 28 N 0.003 4.997 29 C -0.183 4.183 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.248 0.752 37 H 0.193 0.807 38 H 0.213 0.787 39 H 0.220 0.780 40 H 0.197 0.803 41 H 0.110 0.890 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.445 -30.769 -7.113 32.047 hybrid contribution 0.259 1.916 0.293 1.955 sum -5.186 -28.854 -6.820 30.099 Atomic orbital electron populations 1.69819 1.06687 1.26087 1.59627 1.25599 0.96398 1.01235 1.03862 0.85204 0.77183 0.79086 0.78261 1.20161 1.22272 1.20412 1.19630 0.91527 0.85499 1.41064 0.90587 1.42599 1.05572 1.01371 1.89328 1.20829 0.93700 0.84402 0.97636 1.22702 0.98539 0.94698 0.97345 0.90122 1.23214 0.98956 0.92925 0.99736 1.21927 0.84336 0.94743 0.97189 0.87648 1.45713 1.22956 1.42247 1.22241 1.15374 0.81786 0.79416 0.83782 1.90861 1.71842 1.56163 1.24100 1.19213 0.95711 1.02757 1.07799 1.21314 0.88665 0.94725 0.96783 1.98424 1.96488 1.43064 1.58178 1.70078 1.31393 1.10049 1.12528 1.21413 0.79424 0.98674 1.00402 1.20816 1.03465 0.93299 0.94491 1.21800 0.92288 0.97046 0.97192 1.21621 0.97476 0.97340 0.96130 1.22391 0.97577 0.92454 0.96798 1.42562 1.09564 1.21848 1.25775 1.23450 1.01466 0.95767 0.97635 0.94088 0.79679 0.95909 0.95943 0.88806 0.86832 0.75199 0.80706 0.78723 0.77997 0.80295 0.89029 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.75 -38.49 5.60 -343.47 -1.92 -40.42 16 10 C 0.16 6.22 6.10 86.38 0.53 6.75 16 11 C -0.11 -3.40 3.63 -10.27 -0.04 -3.43 16 12 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 13 C -0.11 -2.23 7.39 31.12 0.23 -2.00 16 14 C 0.12 2.88 4.35 45.52 0.20 3.08 16 15 H 0.11 2.53 7.41 -2.39 -0.02 2.52 16 16 N -0.68 -15.75 5.25 -448.92 -2.36 -18.11 16 17 C 0.61 16.87 7.14 85.09 0.61 17.48 16 18 O -0.55 -18.84 16.67 -4.63 -0.08 -18.91 16 19 C -0.14 -3.68 6.52 39.07 0.25 -3.42 16 20 C 0.15 4.49 7.77 84.72 0.66 5.15 16 21 Cl 0.01 0.30 29.11 -2.72 -0.08 0.22 16 22 N -0.52 -14.68 11.25 -183.59 -2.07 -16.75 16 23 C 0.24 5.11 7.77 134.00 1.04 6.15 16 24 C -0.10 -1.09 10.10 22.41 0.23 -0.87 16 25 C -0.06 -0.18 10.07 22.29 0.22 0.04 16 26 C -0.11 -0.34 10.00 22.05 0.22 -0.12 16 27 C 0.03 0.34 10.82 83.37 0.90 1.24 16 28 N -0.33 -6.60 2.96 -344.09 -1.02 -7.62 16 29 C -0.14 -4.29 7.43 31.12 0.23 -4.06 16 30 H 0.25 15.27 8.31 -92.70 -0.77 14.49 16 31 H 0.37 20.61 7.67 -92.71 -0.71 19.90 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.02 0.87 7.85 -2.38 -0.02 0.86 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.41 8.30 8.67 -92.71 -0.80 7.50 16 37 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.20 -1.05 8.06 -2.91 -0.02 -1.07 16 39 H 0.20 -1.04 8.06 -2.91 -0.02 -1.07 16 40 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.09 2.74 7.90 -2.39 -0.02 2.72 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -82.31 377.90 0.95 -81.37 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.43 Total: 23.22 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.59 Total: 8.74 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -7.08 Total: -143.54 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.08 Total: -18.91 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -0.08 Total: 0.22 kcal Total: -82.31 0.95 -81.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717653219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.217 kcal (2) G-P(sol) polarization free energy of solvation -82.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds