Wall clock time and date at job start Wed Apr 1 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00485 * 2 1 4 4 H 1.48497 * 109.47376 * 274.06909 * 3 2 1 5 5 H 1.48508 * 109.46738 * 34.06994 * 3 2 1 6 6 H 1.48504 * 109.47364 * 154.06603 * 3 2 1 7 7 C 1.38817 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99432 * 197.52243 * 7 2 1 9 9 N 1.36933 * 120.00134 * 17.52589 * 7 2 1 10 10 C 1.46925 * 120.63391 * 28.02062 * 9 7 2 11 11 C 1.53185 * 108.77479 * 126.37296 * 10 9 7 12 12 C 1.53034 * 109.34414 * 54.62277 * 11 10 9 13 13 F 1.39891 * 109.48759 * 178.64596 * 12 11 10 14 14 F 1.39901 * 109.43362 * 58.68476 * 12 11 10 15 15 C 1.53046 * 109.53413 * 298.68267 * 12 11 10 16 16 H 1.09005 * 109.49613 * 301.34541 * 15 12 11 17 17 C 1.53004 * 109.49540 * 181.28392 * 15 12 11 18 18 N 1.46502 * 109.46958 * 175.06416 * 17 15 12 19 19 C 1.34772 * 119.99696 * 180.02562 * 18 17 15 20 20 O 1.21285 * 120.00269 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99888 * 180.27712 * 19 18 17 22 22 H 1.08997 * 109.47133 * 14.71970 * 21 19 18 23 23 F 1.39904 * 109.46679 * 254.72365 * 21 19 18 24 24 C 1.53003 * 109.47296 * 134.72364 * 21 19 18 25 25 F 1.39898 * 109.47234 * 59.99559 * 24 21 19 26 26 F 1.39898 * 109.46748 * 179.97438 * 24 21 19 27 27 F 1.39904 * 109.46711 * 299.99850 * 24 21 19 28 28 C 1.46931 * 120.62970 * 208.00104 * 9 7 2 29 29 H 0.97007 * 119.99841 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58618 * 246.16487 * 10 9 7 31 31 H 1.09001 * 109.58340 * 6.44014 * 10 9 7 32 32 H 1.09005 * 109.49780 * 174.58931 * 11 10 9 33 33 H 1.09004 * 109.49812 * 294.64847 * 11 10 9 34 34 H 1.09003 * 109.47153 * 55.06095 * 17 15 12 35 35 H 1.08994 * 109.46945 * 295.06254 * 17 15 12 36 36 H 0.96997 * 119.99922 * 359.97438 * 18 17 15 37 37 H 1.08997 * 109.58796 * 113.83671 * 28 9 7 38 38 H 1.09004 * 109.58887 * 353.41570 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5882 1.4167 0.6123 7 6 2.0101 -1.2022 -0.0005 8 1 3.0526 -1.2240 0.2811 9 7 1.3731 -2.3604 -0.3582 10 6 0.2356 -2.3329 -1.2878 11 6 0.5162 -3.3037 -2.4390 12 6 0.8284 -4.6892 -1.8690 13 9 1.0548 -5.5856 -2.9189 14 9 -0.2553 -5.1326 -1.1034 15 6 2.0771 -4.6104 -0.9876 16 1 2.9163 -4.2419 -1.5777 17 6 2.4071 -6.0020 -0.4440 18 7 3.6667 -5.9487 0.3022 19 6 4.1585 -7.0653 0.8747 20 8 3.5581 -8.1142 0.7725 21 6 5.4510 -7.0093 1.6475 22 1 5.7031 -5.9702 1.8590 23 9 6.4728 -7.5922 0.8902 24 6 5.2920 -7.7736 2.9634 25 9 4.9684 -9.1073 2.6920 26 9 6.4921 -7.7220 3.6805 27 9 4.2702 -7.1906 3.7207 28 6 1.8143 -3.6544 0.1801 29 1 -0.4850 0.8401 0.0004 30 1 -0.6709 -2.6379 -0.7651 31 1 0.1090 -1.3239 -1.6804 32 1 -0.3598 -3.3651 -3.0848 33 1 1.3693 -2.9470 -3.0161 34 1 2.5054 -6.7022 -1.2735 35 1 1.6066 -6.3328 0.2177 36 1 4.1471 -5.1100 0.3836 37 1 1.0365 -4.0673 0.8225 38 1 2.7309 -3.5181 0.7542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724376890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:56 Heat of formation + Delta-G solvation = -312.877764 kcal Electronic energy + Delta-G solvation = -32303.362222 eV Core-core repulsion = 26737.849712 eV Total energy + Delta-G solvation = -5565.512510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.101 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.63952 -48.78778 -48.63851 -48.03072 -47.84822 -46.58694 -40.04141 -37.54290 -35.36025 -32.97276 -31.81874 -30.69062 -30.25112 -26.26383 -25.30717 -24.28819 -22.59120 -21.67150 -21.24766 -19.75766 -19.31834 -19.11328 -18.76956 -17.80166 -17.21312 -16.97787 -16.84941 -16.30514 -15.67269 -15.58498 -15.40549 -14.99617 -14.92490 -14.82205 -14.73113 -14.48241 -14.40404 -14.13476 -14.10219 -14.05622 -13.68082 -13.39347 -13.24438 -13.20872 -12.99250 -12.89982 -12.33468 -11.98572 -11.81794 -11.75516 -11.68378 -11.33073 -10.92630 -10.75840 -10.61239 -10.43776 -10.16545 -10.01824 -9.79307 -9.44306 -8.69753 -7.00058 -6.02283 -3.47666 1.60085 1.96204 2.41131 3.04056 3.24287 3.31705 3.33724 3.43123 3.47063 3.78467 4.04764 4.14228 4.27254 4.39662 4.46764 4.53847 4.75962 5.06694 5.16338 5.27935 5.38169 5.46515 5.73781 5.78701 5.92914 6.06030 6.16113 6.18619 6.31104 6.55555 6.90341 7.00778 7.36294 7.55254 7.56844 8.17538 8.93552 9.56120 10.11008 11.06788 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003335 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.121949 B = 8393.346058 C = 9944.502461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.301 3.699 13 F -0.212 7.212 14 F -0.198 7.198 15 C -0.157 4.157 16 H 0.105 0.895 17 C 0.122 3.878 18 N -0.700 5.700 19 C 0.493 3.507 20 O -0.496 6.496 21 C 0.039 3.961 22 H 0.149 0.851 23 F -0.153 7.153 24 C 0.448 3.552 25 F -0.155 7.155 26 F -0.169 7.169 27 F -0.164 7.164 28 C 0.151 3.849 29 H 0.258 0.742 30 H 0.033 0.967 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.410 0.590 37 H 0.035 0.965 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 -10.792 1.011 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.088 0.912 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.194 7.194 14 F -0.179 7.179 15 C -0.179 4.179 16 H 0.123 0.877 17 C -0.001 4.001 18 N -0.352 5.352 19 C 0.273 3.727 20 O -0.369 6.369 21 C -0.002 4.002 22 H 0.166 0.834 23 F -0.134 7.134 24 C 0.392 3.608 25 F -0.137 7.137 26 F -0.150 7.150 27 F -0.145 7.145 28 C 0.024 3.976 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.246 0.754 37 H 0.053 0.947 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.800 -11.447 0.959 14.470 hybrid contribution 0.657 1.002 0.090 1.201 sum 9.457 -10.445 1.050 14.129 Atomic orbital electron populations 1.70021 1.05364 1.26024 1.52568 1.25092 0.95298 0.98681 1.00018 0.86240 0.79153 0.83365 0.77742 1.21271 1.21619 1.20268 1.19150 0.92858 0.84486 1.42969 0.91246 1.44087 1.36356 1.01301 1.49372 1.20845 0.89443 0.98283 0.87075 1.23269 1.03508 0.92758 1.02321 1.20997 0.84546 0.87753 0.80261 1.92963 1.95001 1.71615 1.59773 1.92976 1.57666 1.90921 1.76356 1.23017 0.97565 0.96442 1.00836 0.87713 1.21520 0.84951 0.97245 0.96419 1.45867 1.25144 1.10965 1.53237 1.19970 0.85888 0.85303 0.81514 1.90865 1.58673 1.29046 1.58342 1.22766 0.88199 1.00633 0.88641 0.83386 1.93023 1.58287 1.85943 1.76114 1.20271 0.74811 0.79550 0.86161 1.93311 1.92319 1.34494 1.93531 1.93255 1.45614 1.96289 1.79854 1.93278 1.59694 1.83922 1.77651 1.20932 0.99015 0.86495 0.91168 0.93240 0.94880 0.88113 0.90420 0.89506 0.90238 0.89818 0.75410 0.94748 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.93 11.22 55.49 0.62 -23.31 16 2 C 0.01 0.23 4.90 -17.43 -0.09 0.14 16 3 Si 0.91 19.78 29.59 -169.99 -5.03 14.75 16 4 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.27 -6.40 9.58 -15.06 -0.14 -6.55 16 8 H 0.07 1.60 7.89 -52.49 -0.41 1.19 16 9 N -0.59 -12.83 2.99 -172.32 -0.52 -13.34 16 10 C 0.17 3.61 5.11 -3.71 -0.02 3.59 16 11 C -0.18 -3.05 5.62 -26.62 -0.15 -3.20 16 12 C 0.30 4.92 1.63 -26.69 -0.04 4.88 16 13 F -0.21 -3.41 16.41 2.25 0.04 -3.37 16 14 F -0.20 -3.56 15.73 2.25 0.04 -3.52 16 15 C -0.16 -2.29 2.03 -90.50 -0.18 -2.47 16 16 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 17 C 0.12 1.60 4.83 -4.04 -0.02 1.58 16 18 N -0.70 -7.53 5.33 -60.29 -0.32 -7.85 16 19 C 0.49 5.86 6.91 -10.99 -0.08 5.79 16 20 O -0.50 -7.78 15.60 5.55 0.09 -7.70 16 21 C 0.04 0.35 3.78 -27.88 -0.11 0.25 16 22 H 0.15 0.69 7.99 -51.93 -0.42 0.28 16 23 F -0.15 -1.56 17.03 2.25 0.04 -1.52 16 24 C 0.45 4.70 2.86 37.16 0.11 4.81 16 25 F -0.16 -1.99 15.95 2.25 0.04 -1.96 16 26 F -0.17 -1.66 17.30 2.25 0.04 -1.62 16 27 F -0.16 -1.81 17.03 2.25 0.04 -1.78 16 28 C 0.15 2.63 5.40 -3.71 -0.02 2.61 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 31 H 0.10 2.40 6.06 -51.93 -0.31 2.08 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.08 7.63 -51.93 -0.40 0.68 16 35 H 0.08 1.20 7.97 -51.93 -0.41 0.79 16 36 H 0.41 3.35 7.59 -40.82 -0.31 3.04 16 37 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 38 H 0.07 1.02 7.14 -51.93 -0.37 0.65 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -29.28 339.00 -4.42 -33.71 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.86 Total: 0.98 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -0.74 Total: 11.42 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.21 Total: -44.50 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 9 Polarization: -13.99 SS G_CDS: 0.22 Total: -13.77 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.28 -4.42 -33.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724376890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -279.172 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -312.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds