Wall clock time and date at job start Wed Apr 1 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00485 * 2 1 4 4 H 1.48497 * 109.47376 * 274.06909 * 3 2 1 5 5 H 1.48508 * 109.46738 * 34.06994 * 3 2 1 6 6 H 1.48504 * 109.47364 * 154.06603 * 3 2 1 7 7 C 1.38817 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99432 * 197.52243 * 7 2 1 9 9 N 1.36933 * 120.00134 * 17.52589 * 7 2 1 10 10 C 1.46925 * 120.63391 * 28.02062 * 9 7 2 11 11 C 1.53185 * 108.77479 * 126.37296 * 10 9 7 12 12 C 1.53034 * 109.34414 * 54.62277 * 11 10 9 13 13 F 1.39891 * 109.48759 * 178.64596 * 12 11 10 14 14 F 1.39901 * 109.43362 * 58.68476 * 12 11 10 15 15 C 1.53046 * 109.53413 * 298.68267 * 12 11 10 16 16 H 1.09005 * 109.49613 * 301.34541 * 15 12 11 17 17 C 1.53004 * 109.49540 * 181.28392 * 15 12 11 18 18 N 1.46502 * 109.46958 * 175.06416 * 17 15 12 19 19 C 1.34772 * 119.99696 * 180.02562 * 18 17 15 20 20 O 1.21285 * 120.00269 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99888 * 180.27712 * 19 18 17 22 22 H 1.08997 * 109.47133 * 14.71970 * 21 19 18 23 23 F 1.39904 * 109.46679 * 254.72365 * 21 19 18 24 24 C 1.53003 * 109.47296 * 134.72364 * 21 19 18 25 25 F 1.39898 * 109.47234 * 59.99559 * 24 21 19 26 26 F 1.39898 * 109.46748 * 179.97438 * 24 21 19 27 27 F 1.39904 * 109.46711 * 299.99850 * 24 21 19 28 28 C 1.46931 * 120.62970 * 208.00104 * 9 7 2 29 29 H 0.97007 * 119.99841 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58618 * 246.16487 * 10 9 7 31 31 H 1.09001 * 109.58340 * 6.44014 * 10 9 7 32 32 H 1.09005 * 109.49780 * 174.58931 * 11 10 9 33 33 H 1.09004 * 109.49812 * 294.64847 * 11 10 9 34 34 H 1.09003 * 109.47153 * 55.06095 * 17 15 12 35 35 H 1.08994 * 109.46945 * 295.06254 * 17 15 12 36 36 H 0.96997 * 119.99922 * 359.97438 * 18 17 15 37 37 H 1.08997 * 109.58796 * 113.83671 * 28 9 7 38 38 H 1.09004 * 109.58887 * 353.41570 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5882 1.4167 0.6123 7 6 2.0101 -1.2022 -0.0005 8 1 3.0526 -1.2240 0.2811 9 7 1.3731 -2.3604 -0.3582 10 6 0.2356 -2.3329 -1.2878 11 6 0.5162 -3.3037 -2.4390 12 6 0.8284 -4.6892 -1.8690 13 9 1.0548 -5.5856 -2.9189 14 9 -0.2553 -5.1326 -1.1034 15 6 2.0771 -4.6104 -0.9876 16 1 2.9163 -4.2419 -1.5777 17 6 2.4071 -6.0020 -0.4440 18 7 3.6667 -5.9487 0.3022 19 6 4.1585 -7.0653 0.8747 20 8 3.5581 -8.1142 0.7725 21 6 5.4510 -7.0093 1.6475 22 1 5.7031 -5.9702 1.8590 23 9 6.4728 -7.5922 0.8902 24 6 5.2920 -7.7736 2.9634 25 9 4.9684 -9.1073 2.6920 26 9 6.4921 -7.7220 3.6805 27 9 4.2702 -7.1906 3.7207 28 6 1.8143 -3.6544 0.1801 29 1 -0.4850 0.8401 0.0004 30 1 -0.6709 -2.6379 -0.7651 31 1 0.1090 -1.3239 -1.6804 32 1 -0.3598 -3.3651 -3.0848 33 1 1.3693 -2.9470 -3.0161 34 1 2.5054 -6.7022 -1.2735 35 1 1.6066 -6.3328 0.2177 36 1 4.1471 -5.1100 0.3836 37 1 1.0365 -4.0673 0.8225 38 1 2.7309 -3.5181 0.7542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724376890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:55 Heat of formation + Delta-G solvation = -330.850710 kcal Electronic energy + Delta-G solvation = -32304.141587 eV Core-core repulsion = 26737.849712 eV Total energy + Delta-G solvation = -5566.291875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.101 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.46503 -49.98742 -49.56289 -48.84596 -48.70671 -47.94221 -41.03838 -38.98084 -36.60085 -34.48804 -32.96291 -32.06538 -31.61098 -27.50143 -26.96521 -25.27565 -24.03645 -23.05751 -22.21200 -21.15858 -20.21118 -19.94284 -19.61128 -18.96549 -18.51475 -18.27133 -17.93526 -17.38897 -17.03283 -16.89258 -16.64196 -16.28973 -15.89065 -15.71920 -15.61297 -15.58092 -15.35430 -15.25691 -15.23211 -14.95983 -14.93279 -14.80077 -14.64223 -14.29868 -14.25030 -14.06785 -13.80873 -13.25525 -13.19660 -13.06934 -13.02812 -12.73167 -12.60766 -12.24936 -12.16126 -11.89040 -11.63456 -11.51128 -11.18108 -10.56237 -10.43718 -8.78987 -7.89095 -5.35556 0.74002 1.09308 1.52637 1.54502 1.55580 1.62922 2.24741 2.50889 2.64061 2.65801 2.81706 3.06000 3.16193 3.24803 3.30380 3.34476 3.52494 3.61443 3.67839 3.90351 4.04831 4.25487 4.47798 4.55579 4.63964 4.77800 4.84697 4.89193 4.93928 5.14860 5.31079 5.61266 5.69366 6.03341 6.35798 6.69688 7.10226 7.78511 8.30808 9.19093 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003335 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.121949 B = 8393.346058 C = 9944.502461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.262 1.262 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.169 4.169 12 C 0.299 3.701 13 F -0.207 7.207 14 F -0.210 7.210 15 C -0.140 4.140 16 H 0.126 0.874 17 C 0.131 3.869 18 N -0.687 5.687 19 C 0.492 3.508 20 O -0.539 6.539 21 C 0.049 3.951 22 H 0.201 0.799 23 F -0.157 7.157 24 C 0.444 3.556 25 F -0.174 7.174 26 F -0.164 7.164 27 F -0.169 7.169 28 C 0.151 3.849 29 H 0.250 0.750 30 H 0.003 0.997 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.425 0.575 37 H 0.018 0.982 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 -10.816 0.744 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.186 1.186 7 C -0.391 4.391 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.208 4.208 12 C 0.262 3.738 13 F -0.188 7.188 14 F -0.191 7.191 15 C -0.161 4.161 16 H 0.144 0.856 17 C 0.007 3.993 18 N -0.340 5.340 19 C 0.273 3.727 20 O -0.415 6.415 21 C 0.008 3.992 22 H 0.218 0.782 23 F -0.138 7.138 24 C 0.389 3.611 25 F -0.155 7.155 26 F -0.145 7.145 27 F -0.150 7.150 28 C 0.025 3.975 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.265 0.735 37 H 0.036 0.964 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.279 -11.476 0.693 16.106 hybrid contribution -0.124 0.947 0.197 0.975 sum 11.156 -10.529 0.890 15.365 Atomic orbital electron populations 1.70177 1.06868 1.25996 1.55027 1.25797 0.95836 1.01602 1.00940 0.85290 0.78449 0.79673 0.77208 1.21500 1.23131 1.18585 1.19593 0.93516 0.85156 1.40834 0.89750 1.44320 1.36127 1.02351 1.49951 1.20544 0.88605 0.97696 0.88080 1.23090 1.04746 0.92218 1.00789 1.21061 0.84959 0.87226 0.80543 1.92974 1.94939 1.71296 1.59554 1.92961 1.58481 1.91002 1.76686 1.22816 0.97269 0.96469 0.99536 0.85616 1.21268 0.85671 0.96011 0.96346 1.45702 1.24283 1.11591 1.52419 1.20421 0.86489 0.84665 0.81088 1.90854 1.60175 1.30641 1.59858 1.22871 0.86448 1.02914 0.86923 0.78220 1.93020 1.58237 1.86328 1.76191 1.20514 0.74763 0.78949 0.86911 1.93276 1.92506 1.36045 1.93680 1.93265 1.45191 1.96205 1.79831 1.93269 1.59985 1.83840 1.77898 1.21043 0.99373 0.84947 0.92169 0.94093 0.97897 0.90971 0.89222 0.88081 0.90225 0.91226 0.73534 0.96444 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.05 11.22 21.65 0.24 -50.81 16 2 C -0.05 -2.29 4.90 84.86 0.42 -1.87 16 3 Si 0.96 40.33 29.59 68.60 2.03 42.36 16 4 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.26 -12.21 9.58 84.04 0.81 -11.41 16 8 H 0.08 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -25.73 2.99 -699.10 -2.09 -27.82 16 10 C 0.18 7.60 5.11 86.36 0.44 8.04 16 11 C -0.17 -5.56 5.62 30.67 0.17 -5.39 16 12 C 0.30 9.26 1.63 30.62 0.05 9.31 16 13 F -0.21 -6.15 16.41 44.97 0.74 -5.41 16 14 F -0.21 -7.44 15.73 44.97 0.71 -6.73 16 15 C -0.14 -3.71 2.03 -10.71 -0.02 -3.73 16 16 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 17 C 0.13 3.16 4.83 86.38 0.42 3.57 16 18 N -0.69 -12.64 5.33 -463.05 -2.47 -15.10 16 19 C 0.49 10.53 6.91 87.66 0.61 11.14 16 20 O -0.54 -16.37 15.60 -3.05 -0.05 -16.42 16 21 C 0.05 0.73 3.78 29.85 0.11 0.85 16 22 H 0.20 0.87 7.99 -2.39 -0.02 0.85 16 23 F -0.16 -2.76 17.03 44.97 0.77 -2.00 16 24 C 0.44 8.47 2.86 71.98 0.21 8.68 16 25 F -0.17 -4.33 15.95 44.97 0.72 -3.62 16 26 F -0.16 -2.86 17.30 44.97 0.78 -2.08 16 27 F -0.17 -3.43 17.03 44.97 0.77 -2.67 16 28 C 0.15 4.95 5.40 86.36 0.47 5.41 16 29 H 0.25 13.40 8.31 -92.70 -0.77 12.63 16 30 H 0.00 0.14 7.92 -2.39 -0.02 0.12 16 31 H 0.07 3.52 6.06 -2.39 -0.01 3.51 16 32 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 34 H 0.08 1.99 7.63 -2.39 -0.02 1.97 16 35 H 0.07 1.92 7.97 -2.39 -0.02 1.90 16 36 H 0.43 5.10 7.59 -92.71 -0.70 4.40 16 37 H 0.02 0.65 7.92 -2.39 -0.02 0.63 16 38 H 0.09 2.49 7.14 -2.38 -0.02 2.47 16 Total: -1.00 -64.54 339.00 6.25 -58.30 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.44 Total: 7.41 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 3.67 Total: 24.60 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.32 Total: -93.73 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.05 Total: -16.42 kcal Atomic # 9 Polarization: -26.98 SS G_CDS: 4.47 Total: -22.51 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -64.54 6.25 -58.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724376890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -272.554 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -337.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -330.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds