Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47135 * 240.00011 * 3 2 1 5 5 H 1.48504 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47392 * 119.99681 * 3 2 1 7 7 C 1.38819 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99903 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00042 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.53776 * 113.61599 * 185.00064 * 11 10 9 13 13 C 1.53778 * 87.08490 * 220.02109 * 12 11 10 14 14 N 1.46497 * 113.61234 * 270.79960 * 13 12 11 15 15 C 1.34781 * 119.99604 * 203.46668 * 14 13 12 16 16 O 1.21718 * 120.00577 * 0.02562 * 15 14 13 17 17 C 1.46573 * 119.99633 * 180.02562 * 15 14 13 18 18 C 1.40547 * 126.58030 * 353.95685 * 17 15 14 19 19 N 1.30750 * 108.73980 * 179.87391 * 18 17 15 20 20 N 1.40020 * 109.60092 * 0.40019 * 19 18 17 21 21 C 1.36271 * 132.00776 * 179.70429 * 20 19 18 22 22 C 1.35178 * 120.72870 * 180.02562 * 21 20 19 23 23 C 1.40149 * 120.33357 * 0.04225 * 22 21 20 24 24 C 1.36547 * 119.39786 * 359.97438 * 23 22 21 25 25 Cl 1.73596 * 120.38302 * 179.97438 * 24 23 22 26 26 C 1.36552 * 107.90622 * 359.74335 * 20 19 18 27 27 C 1.53781 * 87.17081 * 25.39016 * 13 12 11 28 28 H 0.97004 * 120.00033 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00283 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46700 * 60.00408 * 10 9 7 31 31 H 1.09000 * 109.47380 * 300.00511 * 10 9 7 32 32 H 1.09001 * 112.85417 * 316.19916 * 11 10 9 33 33 H 1.09004 * 113.61502 * 105.46692 * 12 11 10 34 34 H 1.09007 * 113.69229 * 334.57980 * 12 11 10 35 35 H 1.08997 * 113.61427 * 139.97902 * 13 12 11 36 36 H 0.96997 * 120.00328 * 23.47027 * 14 13 12 37 37 H 1.07997 * 125.63082 * 0.02562 * 18 17 15 38 38 H 1.08005 * 119.63407 * 0.02562 * 21 20 19 39 39 H 1.08008 * 119.82970 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.30130 * 179.97438 * 23 22 21 41 41 H 1.08998 * 113.61343 * 89.16000 * 27 13 12 42 42 H 1.09001 * 113.61085 * 220.06365 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.7303 -6.2001 0.1251 13 6 0.7044 -6.7001 -0.9056 14 7 -0.5380 -7.1925 -0.3055 15 6 -1.3103 -8.0686 -0.9783 16 8 -0.9752 -8.4510 -2.0842 17 6 -2.5536 -8.5609 -0.3782 18 6 -3.0117 -8.3077 0.9262 19 7 -4.1583 -8.9132 1.0937 20 7 -4.5044 -9.5964 -0.0785 21 6 -5.5808 -10.3674 -0.4007 22 6 -5.6859 -10.9295 -1.6256 23 6 -4.6849 -10.7274 -2.5854 24 6 -3.6021 -9.9567 -2.2725 25 17 -2.3469 -9.6900 -3.4417 26 6 -3.5156 -9.3835 -0.9960 27 6 0.6138 -5.2489 -1.4062 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0016 30 1 2.6852 -3.7142 0.8911 31 1 2.6840 -3.7151 -0.8888 32 1 0.2379 -4.6702 0.6978 33 1 1.6168 -6.6537 1.1098 34 1 2.7587 -6.2236 -0.2357 35 1 1.1226 -7.3896 -1.6388 36 1 -0.8049 -6.8880 0.5759 37 1 -2.5020 -7.7095 1.6670 38 1 -6.3585 -10.5312 0.3306 39 1 -6.5456 -11.5378 -1.8656 40 1 -4.7693 -11.1771 -3.5637 41 1 1.3361 -5.0104 -2.1869 42 1 -0.3999 -4.9357 -1.6560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725065867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = 115.861316 kcal Electronic energy + Delta-G solvation = -26984.884246 eV Core-core repulsion = 22994.678654 eV Total energy + Delta-G solvation = -3990.205592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60175 -39.90714 -38.18218 -37.72435 -36.53925 -34.44600 -33.25452 -32.81103 -31.32205 -30.81280 -29.18305 -26.74309 -25.41009 -24.36760 -24.25341 -23.06858 -22.72416 -21.35038 -20.56521 -18.99243 -18.43677 -17.38693 -17.00018 -16.78469 -16.41168 -16.33240 -15.75483 -15.42797 -14.78517 -14.63433 -14.46071 -13.99581 -13.71891 -13.68183 -13.27310 -13.21880 -13.01626 -12.71563 -12.67483 -12.30761 -12.09338 -11.85872 -11.68524 -11.49423 -10.98171 -10.87104 -10.77365 -10.37076 -10.34044 -10.28846 -10.03695 -9.98734 -9.76114 -9.54524 -9.19080 -8.86099 -8.76659 -8.04278 -6.85216 -5.71345 -2.99255 0.02892 0.44773 1.44543 1.82480 2.05509 2.61727 3.20095 3.45647 3.47307 3.51314 3.52582 3.81158 3.89611 4.16188 4.21979 4.62614 4.66505 4.76257 4.79301 4.90322 4.92358 5.09817 5.21442 5.23838 5.25363 5.43049 5.60712 5.62819 5.83269 5.87900 5.99067 6.02359 6.11134 6.19476 6.22343 6.35615 6.42087 6.51575 6.75954 6.85765 6.94720 7.01967 7.64333 7.74068 8.40747 8.48040 9.58747 10.18761 10.53156 11.51630 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.002111 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.075642 B =13259.502777 C =13708.964904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 C -0.138 4.138 13 C 0.123 3.877 14 N -0.707 5.707 15 C 0.591 3.409 16 O -0.529 6.529 17 C -0.291 4.291 18 C 0.120 3.880 19 N -0.308 5.308 20 N -0.262 5.262 21 C 0.112 3.888 22 C -0.151 4.151 23 C -0.074 4.074 24 C -0.037 4.037 25 Cl 0.019 6.981 26 C 0.157 3.843 27 C -0.139 4.139 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.396 0.604 37 H 0.203 0.797 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -28.264 -2.005 30.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.177 4.177 13 C 0.018 3.982 14 N -0.357 5.357 15 C 0.378 3.622 16 O -0.407 6.407 17 C -0.306 4.306 18 C -0.061 4.061 19 N -0.129 5.129 20 N -0.027 5.027 21 C -0.015 4.015 22 C -0.173 4.173 23 C -0.098 4.098 24 C -0.066 4.066 25 Cl 0.048 6.952 26 C 0.036 3.964 27 C -0.178 4.178 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.230 0.770 37 H 0.220 0.780 38 H 0.195 0.805 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.107 0.893 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.435 -28.539 -1.959 31.192 hybrid contribution 0.603 1.432 -0.043 1.554 sum -11.832 -27.106 -2.001 29.644 Atomic orbital electron populations 1.69655 1.05092 1.25654 1.57962 1.24741 0.95525 0.97662 1.03245 0.86268 0.78500 0.83613 0.77818 1.21314 1.21734 1.21319 1.19205 0.90987 0.84314 1.42410 0.91311 1.42347 1.05843 1.00000 1.89376 1.20640 0.93051 0.85257 0.97597 1.22779 0.99013 0.94157 0.97220 1.23308 0.98885 0.96584 0.98919 1.21851 0.84219 0.95755 0.96389 1.45444 1.23434 1.45870 1.20991 1.16868 0.82154 0.78282 0.84852 1.90998 1.72495 1.58400 1.18774 1.19829 1.01088 1.13692 0.95968 1.24167 0.91435 0.94756 0.95696 1.77661 1.18004 1.16486 1.00764 1.46089 1.14361 1.32023 1.10199 1.21688 0.89312 0.92042 0.98409 1.20879 1.01448 1.03281 0.91661 1.21333 0.91451 0.95989 1.01030 1.20246 0.94802 1.00787 0.90762 1.98498 1.47872 1.94449 1.54339 1.18923 0.90279 0.97331 0.89875 1.23440 1.02377 0.94437 0.97512 0.93543 0.78333 0.96465 0.96262 0.89492 0.91328 0.88825 0.88340 0.76991 0.78050 0.80522 0.81614 0.82828 0.89299 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.88 5.60 -59.91 -0.34 -19.22 16 10 C 0.16 3.27 6.10 -4.04 -0.02 3.25 16 11 C -0.11 -1.77 3.64 -89.72 -0.33 -2.10 16 12 C -0.14 -1.69 7.38 -25.92 -0.19 -1.88 16 13 C 0.12 1.59 4.30 -67.12 -0.29 1.30 16 14 N -0.71 -8.42 5.25 -54.36 -0.29 -8.71 16 15 C 0.59 8.00 7.78 -12.90 -0.10 7.89 16 16 O -0.53 -8.35 11.71 5.17 0.06 -8.29 16 17 C -0.29 -3.55 6.16 -104.68 -0.65 -4.19 16 18 C 0.12 1.22 11.44 -17.14 -0.20 1.02 16 19 N -0.31 -3.41 12.58 30.75 0.39 -3.03 16 20 N -0.26 -2.66 3.86 -10.52 -0.04 -2.70 16 21 C 0.11 0.69 11.17 -16.67 -0.19 0.50 16 22 C -0.15 -0.66 9.98 -39.95 -0.40 -1.06 16 23 C -0.07 -0.48 9.87 -39.47 -0.39 -0.87 16 24 C -0.04 -0.38 6.33 -39.46 -0.25 -0.63 16 25 Cl 0.02 0.23 24.35 -51.86 -1.26 -1.03 16 26 C 0.16 1.84 6.73 -84.04 -0.57 1.27 16 27 C -0.14 -2.13 7.45 -25.83 -0.19 -2.32 16 28 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.10 1.34 7.50 -51.93 -0.39 0.95 16 36 H 0.40 3.85 7.66 -40.82 -0.31 3.53 16 37 H 0.20 1.33 7.49 -52.49 -0.39 0.94 16 38 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.17 0.09 8.06 -52.48 -0.42 -0.34 16 40 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -36.19 368.17 -9.38 -45.57 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.15 Total: 7.49 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.00 Total: -5.34 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.45 Total: -61.73 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.06 Total: -8.29 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.26 Total: -1.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.19 -9.38 -45.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725065867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.434 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds