Wall clock time and date at job start Wed Apr 1 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38277 * 119.98580 * 269.71637 * 11 10 9 13 13 C 1.38220 * 120.04953 * 179.77046 * 12 11 10 14 14 C 1.38221 * 120.02576 * 0.51339 * 13 12 11 15 15 C 1.50700 * 120.01073 * 179.72487 * 14 13 12 16 16 N 1.46496 * 109.47151 * 260.01872 * 15 14 13 17 17 C 1.34780 * 120.00061 * 180.02562 * 16 15 14 18 18 O 1.21277 * 119.99594 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99786 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.46876 * 179.97438 * 19 17 16 21 21 C 1.38426 * 122.53973 * 269.74324 * 20 19 17 22 22 C 1.33391 * 114.91777 * 179.76561 * 21 20 19 23 23 S 1.75887 * 109.59336 * 0.47183 * 22 21 20 24 24 C 1.33390 * 122.53783 * 90.03169 * 20 19 17 25 25 C 1.38441 * 119.97538 * 359.74123 * 14 13 12 26 26 F 1.35100 * 120.02602 * 179.97438 * 25 14 13 27 27 C 1.38170 * 119.98783 * 90.00110 * 11 10 9 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.07998 * 119.96920 * 0.02860 * 12 11 10 33 33 H 1.07997 * 119.98536 * 180.26291 * 13 12 11 34 34 H 1.09000 * 109.46942 * 20.02181 * 15 14 13 35 35 H 1.09004 * 109.46660 * 140.02114 * 15 14 13 36 36 H 0.97003 * 119.99623 * 0.02562 * 16 15 14 37 37 H 1.08991 * 109.47344 * 300.00397 * 19 17 16 38 38 H 1.09002 * 109.46651 * 60.00384 * 19 17 16 39 39 H 1.07997 * 122.53903 * 359.97438 * 21 20 19 40 40 H 1.08006 * 125.20346 * 180.20733 * 22 21 20 41 41 H 1.07993 * 125.20304 * 0.02562 * 24 20 19 42 42 H 1.07998 * 120.01636 * 359.95186 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6334 -5.3252 1.2128 13 6 -0.2685 -6.3726 1.2193 14 6 -0.7184 -6.9053 0.0258 15 6 -1.6970 -8.0513 0.0333 16 7 -0.9798 -9.3074 -0.1993 17 6 -1.6559 -10.4728 -0.2352 18 8 -2.8581 -10.4815 -0.0753 19 6 -0.9182 -11.7648 -0.4750 20 6 -1.8968 -12.9108 -0.4674 21 6 -2.2212 -13.6053 0.6853 22 6 -3.1075 -14.5881 0.5186 23 16 -3.5726 -14.6820 -1.1750 24 6 -2.5117 -13.3365 -1.5719 25 6 -0.2694 -6.3859 -1.1764 26 9 -0.7080 -6.9062 -2.3435 27 6 0.6302 -5.3331 -1.1816 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.9876 -4.9122 2.1457 33 1 -0.6187 -6.7775 2.1572 34 1 -2.1997 -8.0935 0.9995 35 1 -2.4356 -7.9034 -0.7545 36 1 -0.0183 -9.3003 -0.3275 37 1 -0.4155 -11.7222 -1.4411 38 1 -0.1795 -11.9130 0.3127 39 1 -1.7918 -13.3671 1.6472 40 1 -3.4792 -15.2309 1.3029 41 1 -2.3783 -12.9190 -2.5589 42 1 0.9809 -4.9270 -2.1189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734638484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:45 Heat of formation + Delta-G solvation = -14.018753 kcal Electronic energy + Delta-G solvation = -25985.975744 eV Core-core repulsion = 21972.261874 eV Total energy + Delta-G solvation = -4013.713869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.84755 -40.21652 -39.20918 -38.00740 -35.57917 -34.39061 -32.37218 -31.54023 -30.54935 -30.19074 -28.53898 -26.89838 -24.58367 -23.47253 -22.83771 -22.46237 -20.87862 -20.81041 -19.07423 -18.04242 -17.58059 -17.40479 -16.66420 -16.56740 -16.38853 -15.67610 -15.51018 -15.24005 -15.01493 -14.69259 -14.06823 -13.95566 -13.65420 -13.43542 -13.37652 -13.35067 -13.24563 -12.91089 -12.81680 -12.54002 -12.26741 -12.12494 -11.94593 -11.85929 -11.44818 -11.11599 -11.07528 -10.87853 -10.68762 -10.18589 -10.09893 -9.84937 -9.30242 -9.08478 -8.98265 -8.84186 -8.68138 -8.53079 -7.02963 -5.83361 -3.14217 0.72456 1.09566 1.30052 1.38100 1.69353 2.32364 2.43888 3.12920 3.39379 3.44776 3.47370 3.70668 4.26811 4.40118 4.44327 4.55511 4.57514 4.74840 4.76202 4.88337 5.04925 5.06661 5.14002 5.16088 5.30999 5.44026 5.49918 5.52439 5.56669 5.71446 5.90894 6.03676 6.06340 6.06919 6.12421 6.13756 6.14888 6.33155 6.36962 6.45898 6.87361 6.97336 7.26315 7.63051 8.00713 8.33725 9.45734 9.99655 10.35091 11.38941 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.001555 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.926492 B =18005.021792 C =18140.264864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.727 5.727 10 C 0.184 3.816 11 C -0.036 4.036 12 C -0.115 4.115 13 C -0.075 4.075 14 C -0.158 4.158 15 C 0.168 3.832 16 N -0.725 5.725 17 C 0.513 3.487 18 O -0.531 6.531 19 C -0.082 4.082 20 C -0.084 4.084 21 C -0.121 4.121 22 C -0.213 4.213 23 S 0.094 5.906 24 C -0.198 4.198 25 C 0.110 3.890 26 F -0.139 7.139 27 C -0.140 4.140 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.402 0.598 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -29.985 0.328 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.037 4.037 12 C -0.134 4.134 13 C -0.094 4.094 14 C -0.159 4.159 15 C 0.046 3.954 16 N -0.378 5.378 17 C 0.299 3.701 18 O -0.407 6.407 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.151 4.151 22 C -0.348 4.348 23 S 0.358 5.642 24 C -0.334 4.334 25 C 0.091 3.909 26 F -0.118 7.118 27 C -0.159 4.159 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.444 -30.830 -0.438 31.025 hybrid contribution 1.379 1.963 0.508 2.452 sum -2.065 -28.867 0.070 28.941 Atomic orbital electron populations 1.69684 1.05161 1.25732 1.57196 1.24777 0.95547 0.97791 1.02621 0.86089 0.78765 0.83884 0.77243 1.20468 1.21783 1.21780 1.19274 0.91122 0.83818 1.43405 0.90899 1.42327 1.05960 0.99201 1.89644 1.19736 0.91678 0.83669 0.99231 1.20258 0.96207 0.95444 0.91800 1.21214 0.97557 0.96086 0.98525 1.20909 0.96006 0.95844 0.96635 1.19729 1.02828 1.00809 0.92556 1.20023 0.92650 0.79959 1.02807 1.46099 1.11619 1.06080 1.73993 1.20547 0.88041 0.84868 0.76637 1.90736 1.14437 1.87052 1.48453 1.20368 0.97200 0.89768 1.05121 1.18309 1.00587 0.98109 0.92711 1.20013 0.99632 0.96302 0.99184 1.25533 1.04721 1.05170 0.99425 1.84242 1.44824 1.32241 1.02916 1.25426 1.02965 1.02240 1.02768 1.17531 0.97321 0.95386 0.80700 1.91484 1.88124 1.85799 1.46390 1.21136 0.98534 0.96107 1.00120 0.93421 0.77997 0.95058 0.94862 0.84943 0.85125 0.90190 0.90482 0.76401 0.87817 0.87717 0.84351 0.81889 0.81978 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -17.85 5.59 -61.09 -0.34 -18.20 16 10 C 0.18 3.49 6.38 -5.19 -0.03 3.45 16 11 C -0.04 -0.57 5.25 -104.63 -0.55 -1.12 16 12 C -0.12 -1.58 9.70 -39.57 -0.38 -1.96 16 13 C -0.08 -0.88 9.67 -39.59 -0.38 -1.26 16 14 C -0.16 -1.89 5.25 -104.55 -0.55 -2.44 16 15 C 0.17 1.87 5.52 -5.20 -0.03 1.84 16 16 N -0.73 -6.72 5.55 -61.47 -0.34 -7.06 16 17 C 0.51 5.30 7.82 -10.98 -0.09 5.21 16 18 O -0.53 -7.77 16.03 5.56 0.09 -7.68 16 19 C -0.08 -0.57 5.96 -29.04 -0.17 -0.74 16 20 C -0.08 -0.74 4.29 -106.25 -0.46 -1.20 16 21 C -0.12 -1.02 9.98 -41.21 -0.41 -1.43 16 22 C -0.21 -1.67 11.23 29.04 0.33 -1.34 16 23 S 0.09 0.75 23.34 -107.50 -2.51 -1.75 16 24 C -0.20 -1.72 10.98 29.04 0.32 -1.41 16 25 C 0.11 1.52 7.25 -39.41 -0.29 1.23 16 26 F -0.14 -1.97 16.66 2.25 0.04 -1.93 16 27 C -0.14 -2.10 9.68 -39.51 -0.38 -2.48 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.39 10.17 7.66 -40.82 -0.31 9.86 16 30 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.13 1.21 8.04 -52.49 -0.42 0.78 16 34 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 35 H 0.08 0.98 7.95 -51.93 -0.41 0.56 16 36 H 0.40 2.86 8.46 -40.82 -0.35 2.52 16 37 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.10 0.48 8.13 -51.93 -0.42 0.06 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 41 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -33.21 384.52 -10.14 -43.35 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.25 Total: 8.50 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.32 Total: -10.89 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.04 Total: -52.33 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.21 -10.14 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734638484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.334 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds