Wall clock time and date at job start Wed Apr 1 2020 04:57:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86795 * 120.00229 * 2 1
4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1
5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1
6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1
7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1
9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1
10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2
11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7
12 12 C 1.38277 * 119.98580 * 269.71637 * 11 10 9
13 13 C 1.38220 * 120.04953 * 179.77046 * 12 11 10
14 14 C 1.38221 * 120.02576 * 0.51339 * 13 12 11
15 15 C 1.50700 * 120.01073 * 179.72487 * 14 13 12
16 16 N 1.46496 * 109.47151 * 260.01872 * 15 14 13
17 17 C 1.34780 * 120.00061 * 180.02562 * 16 15 14
18 18 O 1.21277 * 119.99594 * 0.02562 * 17 16 15
19 19 C 1.50699 * 119.99786 * 179.97438 * 17 16 15
20 20 C 1.50700 * 109.46876 * 179.97438 * 19 17 16
21 21 C 1.38426 * 122.53973 * 269.74324 * 20 19 17
22 22 C 1.33391 * 114.91777 * 179.76561 * 21 20 19
23 23 S 1.75887 * 109.59336 * 0.47183 * 22 21 20
24 24 C 1.33390 * 122.53783 * 90.03169 * 20 19 17
25 25 C 1.38441 * 119.97538 * 359.74123 * 14 13 12
26 26 F 1.35100 * 120.02602 * 179.97438 * 25 14 13
27 27 C 1.38170 * 119.98783 * 90.00110 * 11 10 9
28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3
29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2
30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7
31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7
32 32 H 1.07998 * 119.96920 * 0.02860 * 12 11 10
33 33 H 1.07997 * 119.98536 * 180.26291 * 13 12 11
34 34 H 1.09000 * 109.46942 * 20.02181 * 15 14 13
35 35 H 1.09004 * 109.46660 * 140.02114 * 15 14 13
36 36 H 0.97003 * 119.99623 * 0.02562 * 16 15 14
37 37 H 1.08991 * 109.47344 * 300.00397 * 19 17 16
38 38 H 1.09002 * 109.46651 * 60.00384 * 19 17 16
39 39 H 1.07997 * 122.53903 * 359.97438 * 21 20 19
40 40 H 1.08006 * 125.20346 * 180.20733 * 22 21 20
41 41 H 1.07993 * 125.20304 * 0.02562 * 24 20 19
42 42 H 1.07998 * 120.01636 * 359.95186 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8916 2.3964 -1.2126
6 1 1.8915 2.3964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2023 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 2.0579 -3.6568 0.0072
11 6 1.0785 -4.8022 0.0126
12 6 0.6334 -5.3252 1.2128
13 6 -0.2685 -6.3726 1.2193
14 6 -0.7184 -6.9053 0.0258
15 6 -1.6970 -8.0513 0.0333
16 7 -0.9798 -9.3074 -0.1993
17 6 -1.6559 -10.4728 -0.2352
18 8 -2.8581 -10.4815 -0.0753
19 6 -0.9182 -11.7648 -0.4750
20 6 -1.8968 -12.9108 -0.4674
21 6 -2.2212 -13.6053 0.6853
22 6 -3.1075 -14.5881 0.5186
23 16 -3.5726 -14.6820 -1.1750
24 6 -2.5117 -13.3365 -1.5719
25 6 -0.2694 -6.3859 -1.1764
26 9 -0.7080 -6.9062 -2.3435
27 6 0.6302 -5.3331 -1.1816
28 1 -0.4850 0.8401 -0.0004
29 1 0.3555 -2.3880 0.0005
30 1 2.6849 -3.7190 -0.8822
31 1 2.6842 -3.7101 0.8977
32 1 0.9876 -4.9122 2.1457
33 1 -0.6187 -6.7775 2.1572
34 1 -2.1997 -8.0935 0.9995
35 1 -2.4356 -7.9034 -0.7545
36 1 -0.0183 -9.3003 -0.3275
37 1 -0.4155 -11.7222 -1.4411
38 1 -0.1795 -11.9130 0.3127
39 1 -1.7918 -13.3671 1.6472
40 1 -3.4792 -15.2309 1.3029
41 1 -2.3783 -12.9190 -2.5589
42 1 0.9809 -4.9270 -2.1189
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734638484.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:44
Heat of formation + Delta-G solvation = -34.090674 kcal
Electronic energy + Delta-G solvation = -25986.846127 eV
Core-core repulsion = 21972.261874 eV
Total energy + Delta-G solvation = -4014.584253 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.105 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-49.96288 -41.04253 -40.26480 -38.67598 -36.91173 -35.77308 -33.79913 -32.48543
-31.75338 -31.40417 -29.34598 -28.11330 -26.02635 -24.44391 -23.95690 -23.76408
-21.99671 -21.66284 -19.68487 -19.39217 -18.69204 -18.24300 -17.87564 -17.66970
-17.26981 -16.75473 -16.53527 -16.42050 -16.14537 -15.78122 -15.44840 -15.18529
-14.94222 -14.75524 -14.48356 -14.31115 -13.93027 -13.72251 -13.67898 -13.52629
-13.39270 -13.12014 -13.08179 -12.89534 -12.79951 -12.58263 -12.48481 -12.12441
-11.95662 -11.75630 -11.67171 -11.06545 -11.00057 -10.15402 -9.94901 -9.69772
-9.64254 -9.28147 -9.03648 -7.95970 -5.26271 -0.01104 0.13320 0.21813
0.79493 1.10287 1.49108 1.49462 1.59750 1.65858 1.69801 2.28682
2.55678 2.71025 3.17780 3.38372 3.45651 3.69511 3.82224 3.91302
4.03395 4.12051 4.14502 4.21988 4.32467 4.38016 4.51738 4.54292
4.61486 4.66072 4.75437 4.78719 4.82332 4.96222 5.04959 5.13720
5.15418 5.28500 5.35994 5.49170 5.49445 5.55517 5.63594 5.87406
6.24781 6.54040 7.25341 7.31944 8.04036 8.28060 9.27410
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.039046 B = 0.001555 C = 0.001543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.926492 B =18005.021792 C =18140.264864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.969 5.969
2 C -0.074 4.074
3 Si 0.975 3.025
4 H -0.263 1.263
5 H -0.295 1.295
6 H -0.293 1.293
7 C -0.246 4.246
8 H 0.081 0.919
9 N -0.740 5.740
10 C 0.184 3.816
11 C -0.054 4.054
12 C -0.115 4.115
13 C -0.062 4.062
14 C -0.141 4.141
15 C 0.172 3.828
16 N -0.715 5.715
17 C 0.514 3.486
18 O -0.578 6.578
19 C -0.076 4.076
20 C -0.096 4.096
21 C -0.136 4.136
22 C -0.218 4.218
23 S 0.086 5.914
24 C -0.216 4.216
25 C 0.103 3.897
26 F -0.143 7.143
27 C -0.149 4.149
28 H 0.251 0.749
29 H 0.374 0.626
30 H 0.033 0.967
31 H 0.044 0.956
32 H 0.141 0.859
33 H 0.164 0.836
34 H 0.088 0.912
35 H 0.060 0.940
36 H 0.415 0.585
37 H 0.126 0.874
38 H 0.134 0.866
39 H 0.153 0.847
40 H 0.183 0.817
41 H 0.170 0.830
42 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.488 -31.340 1.350 31.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.620 5.620
2 C -0.267 4.267
3 Si 0.804 3.196
4 H -0.187 1.187
5 H -0.223 1.223
6 H -0.220 1.220
7 C -0.377 4.377
8 H 0.099 0.901
9 N -0.383 5.383
10 C 0.059 3.941
11 C -0.055 4.055
12 C -0.133 4.133
13 C -0.080 4.080
14 C -0.142 4.142
15 C 0.049 3.951
16 N -0.368 5.368
17 C 0.302 3.698
18 O -0.457 6.457
19 C -0.117 4.117
20 C -0.109 4.109
21 C -0.166 4.166
22 C -0.353 4.353
23 S 0.349 5.651
24 C -0.352 4.352
25 C 0.084 3.916
26 F -0.122 7.122
27 C -0.168 4.168
28 H 0.060 0.940
29 H 0.205 0.795
30 H 0.051 0.949
31 H 0.062 0.938
32 H 0.159 0.841
33 H 0.182 0.818
34 H 0.106 0.894
35 H 0.078 0.922
36 H 0.251 0.749
37 H 0.144 0.856
38 H 0.152 0.848
39 H 0.171 0.829
40 H 0.200 0.800
41 H 0.188 0.812
42 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -2.182 -32.223 0.576 32.302
hybrid contribution 1.006 2.255 0.186 2.476
sum -1.176 -29.968 0.762 30.001
Atomic orbital electron populations
1.69840 1.06734 1.26057 1.59352 1.25596 0.96363 1.01195 1.03519
0.85050 0.78360 0.79624 0.76554 1.18720 1.22283 1.22049 1.19710
0.91708 0.84974 1.41350 0.90072 1.42531 1.05591 1.00602 1.89557
1.19811 0.92232 0.82656 0.99436 1.19990 0.97074 0.95422 0.93013
1.21349 0.97655 0.96391 0.97950 1.21190 0.94555 0.94552 0.97732
1.19829 1.01900 1.00465 0.92019 1.19903 0.92174 0.80389 1.02656
1.45984 1.12200 1.05266 1.73377 1.21115 0.87550 0.85825 0.75332
1.90722 1.16597 1.87713 1.50713 1.20436 0.96911 0.87009 1.07387
1.18604 1.00941 0.98596 0.92756 1.20291 0.99997 0.96493 0.99817
1.25862 1.04453 1.05359 0.99594 1.84228 1.44965 1.32307 1.03571
1.25680 1.03333 1.02683 1.03464 1.17572 0.97448 0.95409 0.81195
1.91475 1.88152 1.85785 1.46770 1.21084 0.99243 0.96801 0.99703
0.94021 0.79466 0.94883 0.93843 0.84129 0.81830 0.89410 0.92189
0.74884 0.85636 0.84822 0.82941 0.80000 0.81205 0.85247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16
2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16
3 Si 0.98 45.29 29.55 68.60 2.03 47.31 16
4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16
5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16
6 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16
7 C -0.25 -13.36 9.99 84.03 0.84 -12.52 16
8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16
9 N -0.74 -36.53 5.59 -347.18 -1.94 -38.48 16
10 C 0.18 6.91 6.38 85.63 0.55 7.46 16
11 C -0.05 -1.68 5.25 -19.87 -0.10 -1.78 16
12 C -0.11 -2.93 9.70 22.27 0.22 -2.71 16
13 C -0.06 -1.27 9.67 22.26 0.22 -1.05 16
14 C -0.14 -3.08 5.25 -19.82 -0.10 -3.19 16
15 C 0.17 3.50 5.52 85.63 0.47 3.97 16
16 N -0.72 -11.57 5.55 -466.79 -2.59 -14.16 16
17 C 0.51 9.62 7.82 87.66 0.69 10.31 16
18 O -0.58 -16.41 16.03 -3.02 -0.05 -16.46 16
19 C -0.08 -0.85 5.96 29.10 0.17 -0.68 16
20 C -0.10 -1.53 4.29 -20.92 -0.09 -1.62 16
21 C -0.14 -2.06 9.98 21.22 0.21 -1.85 16
22 C -0.22 -3.14 11.23 66.72 0.75 -2.39 16
23 S 0.09 1.33 23.34 -56.49 -1.32 0.01 16
24 C -0.22 -3.57 10.98 66.72 0.73 -2.84 16
25 C 0.10 2.74 7.25 22.38 0.16 2.90 16
26 F -0.14 -3.94 16.66 44.97 0.75 -3.19 16
27 C -0.15 -4.44 9.68 22.31 0.22 -4.22 16
28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
29 H 0.37 20.03 7.66 -92.71 -0.71 19.32 16
30 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16
31 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16
32 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16
33 H 0.16 2.31 8.04 -2.91 -0.02 2.29 16
34 H 0.09 1.69 8.00 -2.39 -0.02 1.68 16
35 H 0.06 1.47 7.95 -2.39 -0.02 1.45 16
36 H 0.41 4.67 8.46 -92.71 -0.78 3.89 16
37 H 0.13 0.88 8.12 -2.39 -0.02 0.86 16
38 H 0.13 0.74 8.13 -2.39 -0.02 0.72 16
39 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16
40 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16
41 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16
42 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16
Total: -1.00 -72.21 384.52 2.13 -70.09
By element:
Atomic # 1 Polarization: 27.89 SS G_CDS: -0.42 Total: 27.46 kcal
Atomic # 6 Polarization: -19.34 SS G_CDS: 5.39 Total: -13.95 kcal
Atomic # 7 Polarization: -107.02 SS G_CDS: -4.25 Total: -111.27 kcal
Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal
Atomic # 9 Polarization: -3.94 SS G_CDS: 0.75 Total: -3.19 kcal
Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal
Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal
Total: -72.21 2.13 -70.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734638484.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.995 kcal
(2) G-P(sol) polarization free energy of solvation -72.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.091 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds