Wall clock time and date at job start Wed Apr 1 2020 04:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38277 * 119.98580 * 269.71637 * 11 10 9 13 13 C 1.38220 * 120.04953 * 179.77046 * 12 11 10 14 14 C 1.38221 * 120.02576 * 0.51339 * 13 12 11 15 15 C 1.50700 * 120.01073 * 179.72487 * 14 13 12 16 16 N 1.46496 * 109.47151 * 260.01872 * 15 14 13 17 17 C 1.34780 * 120.00061 * 180.02562 * 16 15 14 18 18 O 1.21277 * 119.99594 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99786 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.46876 * 179.97438 * 19 17 16 21 21 C 1.38426 * 122.53973 * 269.74324 * 20 19 17 22 22 C 1.33391 * 114.91777 * 179.76561 * 21 20 19 23 23 S 1.75887 * 109.59336 * 0.47183 * 22 21 20 24 24 C 1.33390 * 122.53783 * 90.03169 * 20 19 17 25 25 C 1.38441 * 119.97538 * 359.74123 * 14 13 12 26 26 F 1.35100 * 120.02602 * 179.97438 * 25 14 13 27 27 C 1.38170 * 119.98783 * 90.00110 * 11 10 9 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.07998 * 119.96920 * 0.02860 * 12 11 10 33 33 H 1.07997 * 119.98536 * 180.26291 * 13 12 11 34 34 H 1.09000 * 109.46942 * 20.02181 * 15 14 13 35 35 H 1.09004 * 109.46660 * 140.02114 * 15 14 13 36 36 H 0.97003 * 119.99623 * 0.02562 * 16 15 14 37 37 H 1.08991 * 109.47344 * 300.00397 * 19 17 16 38 38 H 1.09002 * 109.46651 * 60.00384 * 19 17 16 39 39 H 1.07997 * 122.53903 * 359.97438 * 21 20 19 40 40 H 1.08006 * 125.20346 * 180.20733 * 22 21 20 41 41 H 1.07993 * 125.20304 * 0.02562 * 24 20 19 42 42 H 1.07998 * 120.01636 * 359.95186 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6334 -5.3252 1.2128 13 6 -0.2685 -6.3726 1.2193 14 6 -0.7184 -6.9053 0.0258 15 6 -1.6970 -8.0513 0.0333 16 7 -0.9798 -9.3074 -0.1993 17 6 -1.6559 -10.4728 -0.2352 18 8 -2.8581 -10.4815 -0.0753 19 6 -0.9182 -11.7648 -0.4750 20 6 -1.8968 -12.9108 -0.4674 21 6 -2.2212 -13.6053 0.6853 22 6 -3.1075 -14.5881 0.5186 23 16 -3.5726 -14.6820 -1.1750 24 6 -2.5117 -13.3365 -1.5719 25 6 -0.2694 -6.3859 -1.1764 26 9 -0.7080 -6.9062 -2.3435 27 6 0.6302 -5.3331 -1.1816 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.9876 -4.9122 2.1457 33 1 -0.6187 -6.7775 2.1572 34 1 -2.1997 -8.0935 0.9995 35 1 -2.4356 -7.9034 -0.7545 36 1 -0.0183 -9.3003 -0.3275 37 1 -0.4155 -11.7222 -1.4411 38 1 -0.1795 -11.9130 0.3127 39 1 -1.7918 -13.3671 1.6472 40 1 -3.4792 -15.2309 1.3029 41 1 -2.3783 -12.9190 -2.5589 42 1 0.9809 -4.9270 -2.1189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734638484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:44 Heat of formation + Delta-G solvation = -34.090674 kcal Electronic energy + Delta-G solvation = -25986.846127 eV Core-core repulsion = 21972.261874 eV Total energy + Delta-G solvation = -4014.584253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96288 -41.04253 -40.26480 -38.67598 -36.91173 -35.77308 -33.79913 -32.48543 -31.75338 -31.40417 -29.34598 -28.11330 -26.02635 -24.44391 -23.95690 -23.76408 -21.99671 -21.66284 -19.68487 -19.39217 -18.69204 -18.24300 -17.87564 -17.66970 -17.26981 -16.75473 -16.53527 -16.42050 -16.14537 -15.78122 -15.44840 -15.18529 -14.94222 -14.75524 -14.48356 -14.31115 -13.93027 -13.72251 -13.67898 -13.52629 -13.39270 -13.12014 -13.08179 -12.89534 -12.79951 -12.58263 -12.48481 -12.12441 -11.95662 -11.75630 -11.67171 -11.06545 -11.00057 -10.15402 -9.94901 -9.69772 -9.64254 -9.28147 -9.03648 -7.95970 -5.26271 -0.01104 0.13320 0.21813 0.79493 1.10287 1.49108 1.49462 1.59750 1.65858 1.69801 2.28682 2.55678 2.71025 3.17780 3.38372 3.45651 3.69511 3.82224 3.91302 4.03395 4.12051 4.14502 4.21988 4.32467 4.38016 4.51738 4.54292 4.61486 4.66072 4.75437 4.78719 4.82332 4.96222 5.04959 5.13720 5.15418 5.28500 5.35994 5.49170 5.49445 5.55517 5.63594 5.87406 6.24781 6.54040 7.25341 7.31944 8.04036 8.28060 9.27410 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.001555 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.926492 B =18005.021792 C =18140.264864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.184 3.816 11 C -0.054 4.054 12 C -0.115 4.115 13 C -0.062 4.062 14 C -0.141 4.141 15 C 0.172 3.828 16 N -0.715 5.715 17 C 0.514 3.486 18 O -0.578 6.578 19 C -0.076 4.076 20 C -0.096 4.096 21 C -0.136 4.136 22 C -0.218 4.218 23 S 0.086 5.914 24 C -0.216 4.216 25 C 0.103 3.897 26 F -0.143 7.143 27 C -0.149 4.149 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.415 0.585 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.183 0.817 41 H 0.170 0.830 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -31.340 1.350 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.383 5.383 10 C 0.059 3.941 11 C -0.055 4.055 12 C -0.133 4.133 13 C -0.080 4.080 14 C -0.142 4.142 15 C 0.049 3.951 16 N -0.368 5.368 17 C 0.302 3.698 18 O -0.457 6.457 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.166 4.166 22 C -0.353 4.353 23 S 0.349 5.651 24 C -0.352 4.352 25 C 0.084 3.916 26 F -0.122 7.122 27 C -0.168 4.168 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.200 0.800 41 H 0.188 0.812 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.182 -32.223 0.576 32.302 hybrid contribution 1.006 2.255 0.186 2.476 sum -1.176 -29.968 0.762 30.001 Atomic orbital electron populations 1.69840 1.06734 1.26057 1.59352 1.25596 0.96363 1.01195 1.03519 0.85050 0.78360 0.79624 0.76554 1.18720 1.22283 1.22049 1.19710 0.91708 0.84974 1.41350 0.90072 1.42531 1.05591 1.00602 1.89557 1.19811 0.92232 0.82656 0.99436 1.19990 0.97074 0.95422 0.93013 1.21349 0.97655 0.96391 0.97950 1.21190 0.94555 0.94552 0.97732 1.19829 1.01900 1.00465 0.92019 1.19903 0.92174 0.80389 1.02656 1.45984 1.12200 1.05266 1.73377 1.21115 0.87550 0.85825 0.75332 1.90722 1.16597 1.87713 1.50713 1.20436 0.96911 0.87009 1.07387 1.18604 1.00941 0.98596 0.92756 1.20291 0.99997 0.96493 0.99817 1.25862 1.04453 1.05359 0.99594 1.84228 1.44965 1.32307 1.03571 1.25680 1.03333 1.02683 1.03464 1.17572 0.97448 0.95409 0.81195 1.91475 1.88152 1.85785 1.46770 1.21084 0.99243 0.96801 0.99703 0.94021 0.79466 0.94883 0.93843 0.84129 0.81830 0.89410 0.92189 0.74884 0.85636 0.84822 0.82941 0.80000 0.81205 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.98 45.29 29.55 68.60 2.03 47.31 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.25 -13.36 9.99 84.03 0.84 -12.52 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -36.53 5.59 -347.18 -1.94 -38.48 16 10 C 0.18 6.91 6.38 85.63 0.55 7.46 16 11 C -0.05 -1.68 5.25 -19.87 -0.10 -1.78 16 12 C -0.11 -2.93 9.70 22.27 0.22 -2.71 16 13 C -0.06 -1.27 9.67 22.26 0.22 -1.05 16 14 C -0.14 -3.08 5.25 -19.82 -0.10 -3.19 16 15 C 0.17 3.50 5.52 85.63 0.47 3.97 16 16 N -0.72 -11.57 5.55 -466.79 -2.59 -14.16 16 17 C 0.51 9.62 7.82 87.66 0.69 10.31 16 18 O -0.58 -16.41 16.03 -3.02 -0.05 -16.46 16 19 C -0.08 -0.85 5.96 29.10 0.17 -0.68 16 20 C -0.10 -1.53 4.29 -20.92 -0.09 -1.62 16 21 C -0.14 -2.06 9.98 21.22 0.21 -1.85 16 22 C -0.22 -3.14 11.23 66.72 0.75 -2.39 16 23 S 0.09 1.33 23.34 -56.49 -1.32 0.01 16 24 C -0.22 -3.57 10.98 66.72 0.73 -2.84 16 25 C 0.10 2.74 7.25 22.38 0.16 2.90 16 26 F -0.14 -3.94 16.66 44.97 0.75 -3.19 16 27 C -0.15 -4.44 9.68 22.31 0.22 -4.22 16 28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.37 20.03 7.66 -92.71 -0.71 19.32 16 30 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 31 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.16 2.31 8.04 -2.91 -0.02 2.29 16 34 H 0.09 1.69 8.00 -2.39 -0.02 1.68 16 35 H 0.06 1.47 7.95 -2.39 -0.02 1.45 16 36 H 0.41 4.67 8.46 -92.71 -0.78 3.89 16 37 H 0.13 0.88 8.12 -2.39 -0.02 0.86 16 38 H 0.13 0.74 8.13 -2.39 -0.02 0.72 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -72.21 384.52 2.13 -70.09 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.42 Total: 27.46 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 5.39 Total: -13.95 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.25 Total: -111.27 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.75 Total: -3.19 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -72.21 2.13 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734638484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.995 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds