Wall clock time and date at job start Wed Apr 1 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00141 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00134 * 3 2 1 7 7 C 1.38802 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46925 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99978 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99564 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99472 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.85078 * 25.33487 * 14 13 11 16 16 C 1.53784 * 113.61275 * 156.53135 * 14 13 11 17 17 C 1.53775 * 87.08140 * 139.98126 * 16 14 13 18 18 H 1.09005 * 113.60901 * 220.01864 * 17 16 14 19 19 N 1.46500 * 113.61828 * 89.20262 * 17 16 14 20 20 C 1.34769 * 120.00435 * 154.99991 * 19 17 16 21 21 O 1.21290 * 119.99520 * 359.97438 * 20 19 17 22 22 C 1.50697 * 120.00531 * 179.97438 * 20 19 17 23 23 C 1.53781 * 113.61238 * 279.13581 * 22 20 19 24 24 C 1.53950 * 87.02115 * 220.04570 * 23 22 20 25 25 F 1.39900 * 113.53850 * 270.81224 * 24 23 22 26 26 F 1.39897 * 113.66802 * 139.93127 * 24 23 22 27 27 C 1.53782 * 113.61785 * 181.52742 * 22 20 19 28 28 C 1.53780 * 113.61457 * 254.13347 * 14 13 11 29 29 H 0.97004 * 120.00251 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46771 * 300.00145 * 10 9 7 31 31 H 1.09000 * 109.46686 * 60.00520 * 10 9 7 32 32 H 0.96999 * 120.00378 * 359.97438 * 13 11 10 33 33 H 1.09003 * 113.60982 * 254.53161 * 16 14 13 34 34 H 1.09004 * 113.61368 * 25.42544 * 16 14 13 35 35 H 0.96998 * 119.99678 * 334.99143 * 19 17 16 36 36 H 1.08992 * 112.85162 * 50.32604 * 22 20 19 37 37 H 1.09001 * 113.61428 * 334.56681 * 23 22 20 38 38 H 1.08996 * 113.61807 * 105.46568 * 23 22 20 39 39 H 1.08991 * 113.61345 * 254.52543 * 27 22 20 40 40 H 1.09004 * 113.61335 * 25.34782 * 27 22 20 41 41 H 1.09003 * 113.61381 * 334.57180 * 28 14 13 42 42 H 1.08995 * 113.61223 * 105.47185 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3305 -7.7150 0.0008 15 1 1.3321 -7.7932 -0.4295 16 6 3.3252 -8.7453 -0.5597 17 6 2.8597 -9.6882 0.5623 18 1 3.6693 -10.2604 1.0157 19 7 1.7130 -10.5210 0.1912 20 6 1.5050 -11.6978 0.8142 21 8 2.2675 -12.0676 1.6820 22 6 0.3251 -12.5541 0.4329 23 6 -0.9955 -12.1078 1.0823 24 6 -1.3109 -13.6018 1.2783 25 9 -1.9833 -14.1777 0.1951 26 9 -1.9106 -13.8924 2.5084 27 6 0.2075 -13.8449 1.2606 28 6 2.4746 -8.4267 1.3563 29 1 -0.4851 -0.8401 0.0004 30 1 3.1245 -3.7313 -0.8905 31 1 3.1244 -3.7313 0.8895 32 1 3.8011 -6.1834 0.0004 33 1 3.0717 -9.0978 -1.5595 34 1 4.3677 -8.4399 -0.4691 35 1 1.1034 -10.2253 -0.5029 36 1 0.2498 -12.7165 -0.6422 37 1 -0.8604 -11.5637 2.0171 38 1 -1.6730 -11.6044 0.3926 39 1 0.4997 -14.7418 0.7146 40 1 0.6734 -13.7771 2.2437 41 1 3.2841 -8.0341 1.9718 42 1 1.5355 -8.5224 1.9012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737441941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:45 Heat of formation + Delta-G solvation = -138.384854 kcal Electronic energy + Delta-G solvation = -27012.447947 eV Core-core repulsion = 22562.571934 eV Total energy + Delta-G solvation = -4449.876013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.29495 -47.62458 -41.02780 -39.85358 -38.40870 -37.15251 -34.37210 -32.66066 -32.56516 -29.38213 -27.03049 -26.86552 -26.14791 -24.96143 -24.22579 -22.02159 -20.73933 -20.30994 -19.98940 -18.67555 -18.35852 -17.39481 -17.14826 -16.77605 -16.65664 -16.46483 -16.16247 -15.65514 -15.15767 -14.78949 -14.64820 -14.49876 -14.40313 -13.97114 -13.89212 -13.88565 -13.41536 -13.25084 -13.07290 -12.92305 -12.67900 -12.47948 -12.39880 -12.15727 -12.05288 -12.01608 -11.83809 -11.19941 -11.03112 -10.93697 -10.92639 -10.35322 -10.23727 -9.64508 -9.61201 -9.52265 -9.07141 -9.00192 -8.26942 -6.71820 -6.66280 -4.04564 2.00625 2.50403 2.85766 2.87511 2.90212 3.19943 3.32103 3.37708 3.48194 3.54982 3.63932 3.67238 3.83462 4.00823 4.17606 4.20959 4.38229 4.54959 4.64488 4.66024 4.80662 4.86433 4.94083 4.99388 5.11529 5.18235 5.18512 5.28308 5.33197 5.41030 5.49282 5.51670 5.67407 5.70443 5.74570 5.95610 6.09216 6.48146 6.95028 7.53059 7.67352 7.89195 8.42038 8.46271 9.22874 10.77771 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.001665 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.441664 B =16815.048617 C =17713.628646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.035 3.965 3 Si 1.090 2.910 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.608 4.608 8 H 0.067 0.933 9 S -0.117 6.117 10 C -0.132 4.132 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.727 5.727 14 C 0.126 3.874 15 H 0.113 0.887 16 C -0.152 4.152 17 C 0.121 3.879 18 H 0.110 0.890 19 N -0.708 5.708 20 C 0.532 3.468 21 O -0.531 6.531 22 C -0.135 4.135 23 C -0.151 4.151 24 C 0.256 3.744 25 F -0.178 7.178 26 F -0.186 7.186 27 C -0.141 4.141 28 C -0.164 4.164 29 H 0.278 0.722 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.405 0.595 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -28.181 -0.956 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.176 4.176 3 Si 0.916 3.084 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.756 4.756 8 H 0.085 0.915 9 S 0.109 5.891 10 C -0.283 4.283 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.380 5.380 14 C 0.020 3.980 15 H 0.131 0.869 16 C -0.191 4.191 17 C 0.015 3.985 18 H 0.128 0.872 19 N -0.359 5.359 20 C 0.318 3.682 21 O -0.407 6.407 22 C -0.156 4.156 23 C -0.189 4.189 24 C 0.219 3.781 25 F -0.158 7.158 26 F -0.167 7.167 27 C -0.180 4.180 28 C -0.204 4.204 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.235 0.765 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.240 0.760 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.791 -27.162 -0.330 27.428 hybrid contribution 1.731 -1.157 -0.395 2.119 sum 5.522 -28.319 -0.726 28.861 Atomic orbital electron populations 1.70741 1.06717 1.31027 1.43403 1.26068 0.96333 1.02185 0.92983 0.83244 0.74081 0.73654 0.77374 1.21395 1.20864 1.20860 1.23761 0.96080 0.92120 1.63620 0.91502 1.84820 1.08097 0.98906 1.97233 1.23330 1.05175 0.94559 1.05276 1.20341 0.86629 0.86397 0.74802 1.90693 1.15385 1.85597 1.47529 1.45948 1.09821 1.05041 1.77227 1.22497 0.98857 0.80328 0.96295 0.86945 1.23741 1.00782 0.95541 0.99009 1.21745 0.89215 0.90782 0.96709 0.87222 1.45678 1.29173 1.20229 1.40824 1.20053 0.85687 0.81084 0.81377 1.90735 1.46793 1.72047 1.31149 1.22569 0.93885 0.96583 1.02548 1.24090 0.95865 0.94579 1.04370 1.21976 0.89205 0.94720 0.72157 1.93038 1.82499 1.86172 1.54117 1.93038 1.86091 1.94662 1.42875 1.23998 0.91368 0.98408 1.04180 1.23993 1.03364 0.95242 0.97785 0.90929 0.88916 0.88924 0.76542 0.90028 0.88020 0.76025 0.85308 0.86305 0.87575 0.88126 0.85532 0.88598 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.27 13.67 55.49 0.76 -26.51 16 2 C 0.03 1.00 5.49 -17.43 -0.10 0.91 16 3 Si 1.09 24.75 29.92 -169.99 -5.09 19.67 16 4 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.61 -17.28 9.50 30.94 0.29 -16.98 16 8 H 0.07 1.82 7.80 -52.49 -0.41 1.42 16 9 S -0.12 -3.08 19.60 -107.50 -2.11 -5.19 16 10 C -0.13 -2.56 6.16 36.01 0.22 -2.33 16 11 C 0.53 9.19 7.85 -10.98 -0.09 9.10 16 12 O -0.52 -10.98 15.48 5.56 0.09 -10.89 16 13 N -0.73 -8.40 5.36 -53.01 -0.28 -8.68 16 14 C 0.13 1.19 4.09 -67.12 -0.27 0.91 16 15 H 0.11 1.22 7.50 -51.93 -0.39 0.83 16 16 C -0.15 -0.92 7.58 -25.92 -0.20 -1.12 16 17 C 0.12 0.86 4.32 -67.03 -0.29 0.57 16 18 H 0.11 0.87 7.46 -51.93 -0.39 0.48 16 19 N -0.71 -4.40 5.26 -52.93 -0.28 -4.67 16 20 C 0.53 4.02 7.35 -10.99 -0.08 3.94 16 21 O -0.53 -6.00 15.51 5.55 0.09 -5.91 16 22 C -0.13 -0.68 4.12 -90.96 -0.37 -1.06 16 23 C -0.15 -0.79 7.43 -25.83 -0.19 -0.99 16 24 C 0.26 1.76 3.28 -25.83 -0.08 1.68 16 25 F -0.18 -1.40 17.38 2.25 0.04 -1.36 16 26 F -0.19 -1.68 17.41 2.25 0.04 -1.64 16 27 C -0.14 -0.82 7.19 -25.92 -0.19 -1.01 16 28 C -0.16 -1.44 7.69 -25.83 -0.20 -1.63 16 29 H 0.28 8.75 7.13 -40.82 -0.29 8.46 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.40 3.46 8.71 -40.82 -0.36 3.10 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.50 8.11 -51.93 -0.42 0.08 16 35 H 0.40 1.73 8.70 -40.82 -0.36 1.37 16 36 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.13 0.86 7.45 -51.93 -0.39 0.47 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -37.04 379.06 -8.17 -45.21 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.59 Total: 2.27 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.54 Total: -8.01 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.20 Total: -39.87 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.17 Total: -16.80 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.67 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.11 Total: -5.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.04 -8.17 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737441941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.170 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds