Wall clock time and date at job start Wed Apr 1 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00141 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00134 * 3 2 1 7 7 C 1.38802 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46925 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99978 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99564 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99472 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.85078 * 25.33487 * 14 13 11 16 16 C 1.53784 * 113.61275 * 156.53135 * 14 13 11 17 17 C 1.53775 * 87.08140 * 139.98126 * 16 14 13 18 18 H 1.09005 * 113.60901 * 220.01864 * 17 16 14 19 19 N 1.46500 * 113.61828 * 89.20262 * 17 16 14 20 20 C 1.34769 * 120.00435 * 154.99991 * 19 17 16 21 21 O 1.21290 * 119.99520 * 359.97438 * 20 19 17 22 22 C 1.50697 * 120.00531 * 179.97438 * 20 19 17 23 23 C 1.53781 * 113.61238 * 279.13581 * 22 20 19 24 24 C 1.53950 * 87.02115 * 220.04570 * 23 22 20 25 25 F 1.39900 * 113.53850 * 270.81224 * 24 23 22 26 26 F 1.39897 * 113.66802 * 139.93127 * 24 23 22 27 27 C 1.53782 * 113.61785 * 181.52742 * 22 20 19 28 28 C 1.53780 * 113.61457 * 254.13347 * 14 13 11 29 29 H 0.97004 * 120.00251 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46771 * 300.00145 * 10 9 7 31 31 H 1.09000 * 109.46686 * 60.00520 * 10 9 7 32 32 H 0.96999 * 120.00378 * 359.97438 * 13 11 10 33 33 H 1.09003 * 113.60982 * 254.53161 * 16 14 13 34 34 H 1.09004 * 113.61368 * 25.42544 * 16 14 13 35 35 H 0.96998 * 119.99678 * 334.99143 * 19 17 16 36 36 H 1.08992 * 112.85162 * 50.32604 * 22 20 19 37 37 H 1.09001 * 113.61428 * 334.56681 * 23 22 20 38 38 H 1.08996 * 113.61807 * 105.46568 * 23 22 20 39 39 H 1.08991 * 113.61345 * 254.52543 * 27 22 20 40 40 H 1.09004 * 113.61335 * 25.34782 * 27 22 20 41 41 H 1.09003 * 113.61381 * 334.57180 * 28 14 13 42 42 H 1.08995 * 113.61223 * 105.47185 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3305 -7.7150 0.0008 15 1 1.3321 -7.7932 -0.4295 16 6 3.3252 -8.7453 -0.5597 17 6 2.8597 -9.6882 0.5623 18 1 3.6693 -10.2604 1.0157 19 7 1.7130 -10.5210 0.1912 20 6 1.5050 -11.6978 0.8142 21 8 2.2675 -12.0676 1.6820 22 6 0.3251 -12.5541 0.4329 23 6 -0.9955 -12.1078 1.0823 24 6 -1.3109 -13.6018 1.2783 25 9 -1.9833 -14.1777 0.1951 26 9 -1.9106 -13.8924 2.5084 27 6 0.2075 -13.8449 1.2606 28 6 2.4746 -8.4267 1.3563 29 1 -0.4851 -0.8401 0.0004 30 1 3.1245 -3.7313 -0.8905 31 1 3.1244 -3.7313 0.8895 32 1 3.8011 -6.1834 0.0004 33 1 3.0717 -9.0978 -1.5595 34 1 4.3677 -8.4399 -0.4691 35 1 1.1034 -10.2253 -0.5029 36 1 0.2498 -12.7165 -0.6422 37 1 -0.8604 -11.5637 2.0171 38 1 -1.6730 -11.6044 0.3926 39 1 0.4997 -14.7418 0.7146 40 1 0.6734 -13.7771 2.2437 41 1 3.2841 -8.0341 1.9718 42 1 1.5355 -8.5224 1.9012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737441941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:45 Heat of formation + Delta-G solvation = -165.104298 kcal Electronic energy + Delta-G solvation = -27013.606589 eV Core-core repulsion = 22562.571934 eV Total energy + Delta-G solvation = -4451.034655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89035 -48.24186 -41.70672 -40.79492 -39.38927 -37.76563 -35.29049 -34.74899 -33.58690 -30.80871 -27.63587 -27.31599 -27.08421 -26.77008 -25.06264 -22.62074 -21.93244 -20.90568 -20.75855 -20.33135 -19.24838 -18.07624 -17.97813 -17.76701 -17.43628 -17.22122 -16.87387 -16.52633 -16.40388 -16.20204 -15.73624 -15.46445 -15.13232 -15.08251 -14.96373 -14.60603 -14.51731 -14.44879 -14.03329 -13.98021 -13.70901 -13.55077 -13.39248 -13.22648 -13.03407 -12.76240 -12.54116 -12.48767 -11.94270 -11.92943 -11.69661 -11.51317 -11.50499 -11.11836 -11.04717 -10.95128 -10.32066 -10.22677 -10.01436 -8.92704 -8.86392 -6.27622 1.21953 1.41731 1.51739 1.52194 1.61938 1.78222 1.97407 2.23047 2.34722 2.40130 2.71218 3.02219 3.13833 3.14788 3.19855 3.34421 3.37724 3.53488 3.84283 3.87878 3.91146 4.01852 4.19120 4.24474 4.33815 4.39236 4.41650 4.54153 4.59459 4.68711 4.71049 4.77501 4.86745 4.98360 4.99279 5.04184 5.38648 5.58590 5.65097 6.15245 6.42690 6.47205 7.05942 7.12513 7.18498 8.50963 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.001665 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.441664 B =16815.048617 C =17713.628646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.141 2.859 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.613 4.613 8 H 0.075 0.925 9 S -0.197 6.197 10 C -0.112 4.112 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.700 5.700 14 C 0.114 3.886 15 H 0.098 0.902 16 C -0.127 4.127 17 C 0.126 3.874 18 H 0.107 0.893 19 N -0.700 5.700 20 C 0.532 3.468 21 O -0.572 6.572 22 C -0.123 4.123 23 C -0.146 4.146 24 C 0.247 3.753 25 F -0.183 7.183 26 F -0.202 7.202 27 C -0.140 4.140 28 C -0.165 4.165 29 H 0.261 0.739 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.418 0.582 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.416 0.584 36 H 0.158 0.842 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 -28.759 -2.085 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.223 4.223 3 Si 0.959 3.041 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.760 4.760 8 H 0.093 0.907 9 S 0.030 5.970 10 C -0.263 4.263 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.353 5.353 14 C 0.009 3.991 15 H 0.116 0.884 16 C -0.165 4.165 17 C 0.020 3.980 18 H 0.125 0.875 19 N -0.351 5.351 20 C 0.319 3.681 21 O -0.451 6.451 22 C -0.144 4.144 23 C -0.184 4.184 24 C 0.210 3.790 25 F -0.164 7.164 26 F -0.183 7.183 27 C -0.178 4.178 28 C -0.205 4.205 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.256 0.744 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.253 0.747 36 H 0.176 0.824 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.347 -27.787 -1.481 28.541 hybrid contribution 0.994 -1.126 -0.011 1.501 sum 7.340 -28.912 -1.492 29.867 Atomic orbital electron populations 1.70862 1.08010 1.30091 1.46003 1.27822 0.96343 1.06421 0.91761 0.82650 0.74128 0.69444 0.77842 1.18662 1.20127 1.20000 1.24088 0.96504 0.92826 1.62609 0.90676 1.85047 1.13315 1.01199 1.97477 1.23256 1.02115 0.93925 1.07036 1.20013 0.86407 0.86650 0.74942 1.90686 1.17374 1.86036 1.50234 1.45719 1.10130 1.04677 1.74742 1.22743 0.99513 0.79364 0.97488 0.88421 1.23670 1.00843 0.92770 0.99263 1.21657 0.89284 0.90214 0.96840 0.87541 1.45654 1.29109 1.19695 1.40671 1.20423 0.85738 0.81311 0.80613 1.90723 1.48394 1.73014 1.32923 1.22601 0.92418 0.95393 1.03964 1.24080 0.96239 0.93548 1.04535 1.22257 0.89487 0.95818 0.71404 1.93023 1.82699 1.86392 1.54241 1.93003 1.86436 1.94865 1.44004 1.23978 0.90309 0.99571 1.03973 1.24008 1.02702 0.96346 0.97435 0.92774 0.86914 0.87187 0.74374 0.88357 0.85857 0.74684 0.82434 0.86990 0.85957 0.86726 0.86825 0.87997 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.54 13.67 21.65 0.30 -57.25 16 2 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 3 Si 1.14 48.81 29.92 68.60 2.05 50.87 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.61 -34.77 9.50 67.95 0.65 -34.12 16 8 H 0.08 4.00 7.80 -2.91 -0.02 3.98 16 9 S -0.20 -10.59 19.60 -56.49 -1.11 -11.69 16 10 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 11 C 0.53 17.88 7.85 87.66 0.69 18.57 16 12 O -0.57 -24.20 15.48 -3.03 -0.05 -24.25 16 13 N -0.70 -14.45 5.36 -440.03 -2.36 -16.81 16 14 C 0.11 1.91 4.09 45.52 0.19 2.09 16 15 H 0.10 2.01 7.50 -2.39 -0.02 1.99 16 16 C -0.13 -1.09 7.58 31.12 0.24 -0.85 16 17 C 0.13 1.50 4.32 45.57 0.20 1.70 16 18 H 0.11 1.45 7.46 -2.38 -0.02 1.44 16 19 N -0.70 -7.34 5.26 -439.77 -2.32 -9.65 16 20 C 0.53 7.32 7.35 87.66 0.64 7.97 16 21 O -0.57 -12.57 15.51 -3.06 -0.05 -12.62 16 22 C -0.12 -1.03 4.12 -11.01 -0.05 -1.08 16 23 C -0.15 -1.38 7.43 31.18 0.23 -1.15 16 24 C 0.25 3.24 3.28 31.18 0.10 3.34 16 25 F -0.18 -2.70 17.38 44.97 0.78 -1.91 16 26 F -0.20 -3.71 17.41 44.97 0.78 -2.92 16 27 C -0.14 -1.51 7.19 31.12 0.22 -1.29 16 28 C -0.16 -2.65 7.69 31.18 0.24 -2.41 16 29 H 0.26 17.08 7.13 -92.70 -0.66 16.42 16 30 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 31 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 32 H 0.42 5.68 8.71 -92.71 -0.81 4.87 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.62 8.11 -2.38 -0.02 0.60 16 35 H 0.42 2.57 8.70 -92.71 -0.81 1.76 16 36 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.11 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.57 7.45 -2.39 -0.02 1.55 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -83.83 379.06 1.87 -81.96 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.42 Total: 15.95 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.25 Total: -11.67 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -4.38 Total: -83.71 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.09 Total: -36.86 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.56 Total: -4.84 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.87 kcal Atomic # 16 Polarization: -10.59 SS G_CDS: -1.11 Total: -11.69 kcal Total: -83.83 1.87 -81.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737441941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.142 kcal (2) G-P(sol) polarization free energy of solvation -83.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds