Wall clock time and date at job start Wed Apr 1 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47275 * 239.99947 * 3 2 1 5 5 H 1.48501 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46758 * 120.00189 * 3 2 1 7 7 C 1.38799 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99736 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47326 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00044 * 180.02562 * 11 10 9 14 14 C 1.46509 * 120.00136 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47249 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.47117 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99679 * 180.02562 * 16 15 14 18 18 O 1.21777 * 120.00410 * 5.04403 * 17 16 15 19 19 C 1.41814 * 119.99441 * 185.05305 * 17 16 15 20 20 C 1.38525 * 126.78900 * 354.91758 * 19 17 16 21 21 N 1.32335 * 108.21545 * 180.02562 * 20 19 17 22 22 C 1.33199 * 109.81031 * 359.97438 * 21 20 19 23 23 C 1.40657 * 131.81243 * 179.97438 * 22 21 20 24 24 C 1.36285 * 119.38533 * 180.02562 * 23 22 21 25 25 C 1.40182 * 119.60506 * 359.69365 * 24 23 22 26 26 C 1.35256 * 120.12250 * 0.59244 * 25 24 23 27 27 N 1.35954 * 120.64463 * 359.43604 * 26 25 24 28 28 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47263 * 60.00317 * 10 9 7 30 30 H 1.08996 * 109.47126 * 300.00436 * 10 9 7 31 31 H 0.97008 * 120.00207 * 359.97438 * 13 11 10 32 32 H 1.08994 * 109.46825 * 59.99962 * 14 13 11 33 33 H 1.08989 * 109.46658 * 299.99822 * 14 13 11 34 34 H 1.09001 * 109.47128 * 59.99581 * 15 14 13 35 35 H 1.09004 * 109.46959 * 299.99992 * 15 14 13 36 36 H 0.96998 * 119.99843 * 0.02562 * 16 15 14 37 37 H 1.07991 * 125.89270 * 0.04271 * 20 19 17 38 38 H 1.08000 * 120.31108 * 359.97438 * 23 22 21 39 39 H 1.07999 * 120.19947 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.93334 * 180.30893 * 25 24 23 41 41 H 1.08003 * 119.67862 * 179.71201 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0007 14 6 2.3304 -7.7151 0.0008 15 6 3.5024 -8.6986 0.0009 16 7 2.9887 -10.0705 0.0016 17 6 3.8455 -11.1109 0.0023 18 8 5.0435 -10.9131 0.0952 19 6 3.3519 -12.4360 -0.1052 20 6 2.0232 -12.8277 -0.1193 21 7 1.9817 -14.1456 -0.2324 22 6 3.2199 -14.6327 -0.2934 23 6 3.7056 -15.9472 -0.4138 24 6 5.0508 -16.1622 -0.4525 25 6 5.9288 -15.0718 -0.3785 26 6 5.4423 -13.8156 -0.2572 27 7 4.1018 -13.5925 -0.2171 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1245 -3.7313 -0.8904 31 1 3.8010 -6.1835 0.0004 32 1 1.7222 -7.8753 -0.8894 33 1 1.7214 -7.8749 0.8905 34 1 4.1110 -8.5384 0.8909 35 1 4.1111 -8.5385 -0.8891 36 1 2.0319 -10.2301 0.0015 37 1 1.1688 -12.1710 -0.0502 38 1 3.0189 -16.7786 -0.4742 39 1 5.4381 -17.1661 -0.5452 40 1 6.9958 -15.2357 -0.4137 41 1 6.1253 -12.9813 -0.1960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740481753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:11 Heat of formation + Delta-G solvation = 19.471500 kcal Electronic energy + Delta-G solvation = -25483.789320 eV Core-core repulsion = 21491.447658 eV Total energy + Delta-G solvation = -3992.341661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46730 -40.02229 -39.17944 -37.96450 -36.08931 -34.24809 -34.01452 -32.44160 -31.27851 -30.57171 -29.60523 -27.81851 -25.50977 -24.78342 -24.13478 -22.85304 -22.72959 -21.24492 -20.37063 -18.86410 -17.85519 -17.55733 -17.09655 -16.81665 -16.52988 -16.29495 -16.05718 -15.84364 -15.59670 -15.07800 -15.01128 -14.81317 -14.52290 -14.11482 -14.03406 -13.87104 -13.20537 -13.02781 -12.58521 -12.56117 -12.53348 -12.42651 -12.08660 -11.72179 -11.58981 -11.06144 -11.04555 -10.98558 -10.78373 -10.41403 -9.84561 -9.64828 -9.51780 -9.48593 -9.08829 -9.01828 -8.47691 -8.26812 -6.52184 -6.22877 -3.93946 0.12059 0.23704 1.71406 1.78813 2.62930 2.88411 2.93298 3.01446 3.12789 3.22996 3.27631 3.33875 3.55121 3.73987 3.90911 4.14621 4.19226 4.24689 4.33610 4.44681 4.46978 4.75838 4.77413 4.89375 5.09370 5.12368 5.13046 5.21151 5.35071 5.50640 5.54441 5.58561 5.69833 5.82552 5.84125 5.85773 5.92957 6.10926 6.34817 6.45863 6.93253 7.14646 7.57039 7.58899 7.69047 8.33692 8.51218 9.22407 10.84478 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.041494 B = 0.001387 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.628064 B =20180.151072 C =20816.520344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.737 5.737 14 C 0.110 3.890 15 C 0.113 3.887 16 N -0.716 5.716 17 C 0.603 3.397 18 O -0.553 6.553 19 C -0.151 4.151 20 C 0.113 3.887 21 N -0.494 5.494 22 C 0.245 3.755 23 C -0.091 4.091 24 C -0.084 4.084 25 C -0.144 4.144 26 C 0.075 3.925 27 N -0.322 5.322 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.405 0.595 37 H 0.193 0.807 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 -33.521 -0.851 35.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.393 5.393 14 C -0.015 4.015 15 C -0.011 4.011 16 N -0.368 5.368 17 C 0.392 3.608 18 O -0.433 6.433 19 C -0.264 4.264 20 C -0.049 4.049 21 N -0.213 5.213 22 C 0.005 3.995 23 C -0.111 4.111 24 C -0.109 4.109 25 C -0.164 4.164 26 C -0.050 4.050 27 N 0.009 4.991 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.241 0.759 37 H 0.210 0.790 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.175 0.825 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.320 -33.987 -0.827 35.529 hybrid contribution 2.703 1.782 0.041 3.238 sum 13.022 -32.205 -0.786 34.747 Atomic orbital electron populations 1.70005 1.05958 1.27602 1.46713 1.24985 0.95021 0.99017 0.94471 0.86224 0.79241 0.81220 0.78812 1.19929 1.20795 1.19933 1.22830 0.94898 0.91637 1.59179 0.90930 1.85394 1.04808 0.96332 1.96745 1.23533 1.06696 0.95090 1.05105 1.20325 0.86432 0.86211 0.74977 1.90712 1.15326 1.85535 1.47305 1.45798 1.10262 1.04817 1.78377 1.21319 0.95459 0.81364 1.03346 1.21470 0.96440 0.79612 1.03547 1.45359 1.10078 1.05355 1.76028 1.15299 0.85941 0.82848 0.76705 1.90830 1.15085 1.86129 1.51262 1.19722 0.91677 0.87541 1.27506 1.23256 0.94131 0.91964 0.95534 1.70551 1.18156 1.09703 1.22848 1.21160 0.85112 0.89898 1.03300 1.20394 0.96237 0.92539 1.01915 1.21226 0.92328 1.00212 0.97109 1.21020 1.01852 0.90565 1.02999 1.22106 0.82492 1.00361 1.00058 1.42422 1.06676 1.07749 1.42230 0.92103 0.89060 0.89057 0.76472 0.90776 0.90757 0.90320 0.90453 0.75926 0.78995 0.82508 0.83365 0.82507 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 12 O -0.52 -11.19 15.86 5.56 0.09 -11.11 16 13 N -0.74 -8.90 5.56 -60.30 -0.33 -9.24 16 14 C 0.11 1.08 5.79 -4.04 -0.02 1.06 16 15 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 16 N -0.72 -5.49 5.53 -63.16 -0.35 -5.84 16 17 C 0.60 6.09 7.59 -14.89 -0.11 5.98 16 18 O -0.55 -7.10 15.37 5.12 0.08 -7.02 16 19 C -0.15 -1.44 6.83 -83.48 -0.57 -2.01 16 20 C 0.11 0.94 11.32 -17.23 -0.20 0.74 16 21 N -0.49 -4.99 11.25 -12.27 -0.14 -5.13 16 22 C 0.25 2.23 7.77 -156.06 -1.21 1.02 16 23 C -0.09 -0.52 10.10 -39.37 -0.40 -0.92 16 24 C -0.08 -0.31 10.07 -39.56 -0.40 -0.71 16 25 C -0.14 -0.61 10.00 -39.91 -0.40 -1.01 16 26 C 0.07 0.54 10.51 -16.79 -0.18 0.36 16 27 N -0.32 -3.00 2.96 -60.15 -0.18 -3.17 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.14 -51.94 -0.42 0.33 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.41 2.11 7.26 -40.82 -0.30 1.82 16 37 H 0.19 0.87 7.37 -52.49 -0.39 0.49 16 38 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 40 H 0.16 0.20 8.06 -52.48 -0.42 -0.23 16 41 H 0.18 1.30 6.81 -52.48 -0.36 0.94 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -39.08 375.02 -9.60 -48.68 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.74 Total: 0.85 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.18 Total: -0.84 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.27 Total: -48.62 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.08 -9.60 -48.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.147 kcal (2) G-P(sol) polarization free energy of solvation -39.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds