Wall clock time and date at job start Wed Apr 1 2020 05:19:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86803 * 119.99994 * 2 1
4 4 H 1.48497 * 109.47275 * 239.99947 * 3 2 1
5 5 H 1.48501 * 109.47035 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46758 * 120.00189 * 3 2 1
7 7 C 1.38799 * 120.00199 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00245 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99736 * 359.97438 * 7 2 1
10 10 C 1.81000 * 100.00062 * 180.02562 * 9 7 2
11 11 C 1.50701 * 109.47326 * 179.97438 * 10 9 7
12 12 O 1.21282 * 120.00007 * 0.02562 * 11 10 9
13 13 N 1.34770 * 120.00044 * 180.02562 * 11 10 9
14 14 C 1.46509 * 120.00136 * 180.02562 * 13 11 10
15 15 C 1.53000 * 109.47249 * 179.97438 * 14 13 11
16 16 N 1.46499 * 109.47117 * 179.97438 * 15 14 13
17 17 C 1.34777 * 119.99679 * 180.02562 * 16 15 14
18 18 O 1.21777 * 120.00410 * 5.04403 * 17 16 15
19 19 C 1.41814 * 119.99441 * 185.05305 * 17 16 15
20 20 C 1.38525 * 126.78900 * 354.91758 * 19 17 16
21 21 N 1.32335 * 108.21545 * 180.02562 * 20 19 17
22 22 C 1.33199 * 109.81031 * 359.97438 * 21 20 19
23 23 C 1.40657 * 131.81243 * 179.97438 * 22 21 20
24 24 C 1.36285 * 119.38533 * 180.02562 * 23 22 21
25 25 C 1.40182 * 119.60506 * 359.69365 * 24 23 22
26 26 C 1.35256 * 120.12250 * 0.59244 * 25 24 23
27 27 N 1.35954 * 120.64463 * 359.43604 * 26 25 24
28 28 H 0.97003 * 120.00068 * 359.97438 * 1 2 3
29 29 H 1.09007 * 109.47263 * 60.00317 * 10 9 7
30 30 H 1.08996 * 109.47126 * 300.00436 * 10 9 7
31 31 H 0.97008 * 120.00207 * 359.97438 * 13 11 10
32 32 H 1.08994 * 109.46825 * 59.99962 * 14 13 11
33 33 H 1.08989 * 109.46658 * 299.99822 * 14 13 11
34 34 H 1.09001 * 109.47128 * 59.99581 * 15 14 13
35 35 H 1.09004 * 109.46959 * 299.99992 * 15 14 13
36 36 H 0.96998 * 119.99843 * 0.02562 * 16 15 14
37 37 H 1.07991 * 125.89270 * 0.04271 * 20 19 17
38 38 H 1.08000 * 120.31108 * 359.97438 * 23 22 21
39 39 H 1.07999 * 120.19947 * 180.02562 * 24 23 22
40 40 H 1.08004 * 119.93334 * 180.30893 * 25 24 23
41 41 H 1.08003 * 119.67862 * 179.71201 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1041 1.6965 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 16 1.1293 -2.7279 -0.0005
10 6 2.5158 -3.8914 -0.0005
11 6 1.9874 -5.3027 0.0001
12 8 0.7911 -5.5023 0.0000
13 7 2.8441 -6.3431 0.0007
14 6 2.3304 -7.7151 0.0008
15 6 3.5024 -8.6986 0.0009
16 7 2.9887 -10.0705 0.0016
17 6 3.8455 -11.1109 0.0023
18 8 5.0435 -10.9131 0.0952
19 6 3.3519 -12.4360 -0.1052
20 6 2.0232 -12.8277 -0.1193
21 7 1.9817 -14.1456 -0.2324
22 6 3.2199 -14.6327 -0.2934
23 6 3.7056 -15.9472 -0.4138
24 6 5.0508 -16.1622 -0.4525
25 6 5.9288 -15.0718 -0.3785
26 6 5.4423 -13.8156 -0.2572
27 7 4.1018 -13.5925 -0.2171
28 1 -0.4850 0.8401 0.0004
29 1 3.1245 -3.7314 0.8895
30 1 3.1245 -3.7313 -0.8904
31 1 3.8010 -6.1835 0.0004
32 1 1.7222 -7.8753 -0.8894
33 1 1.7214 -7.8749 0.8905
34 1 4.1110 -8.5384 0.8909
35 1 4.1111 -8.5385 -0.8891
36 1 2.0319 -10.2301 0.0015
37 1 1.1688 -12.1710 -0.0502
38 1 3.0189 -16.7786 -0.4742
39 1 5.4381 -17.1661 -0.5452
40 1 6.9958 -15.2357 -0.4137
41 1 6.1253 -12.9813 -0.1960
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001740481753.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:11
Heat of formation + Delta-G solvation = 19.471500 kcal
Electronic energy + Delta-G solvation = -25483.789320 eV
Core-core repulsion = 21491.447658 eV
Total energy + Delta-G solvation = -3992.341661 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.104 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.46730 -40.02229 -39.17944 -37.96450 -36.08931 -34.24809 -34.01452 -32.44160
-31.27851 -30.57171 -29.60523 -27.81851 -25.50977 -24.78342 -24.13478 -22.85304
-22.72959 -21.24492 -20.37063 -18.86410 -17.85519 -17.55733 -17.09655 -16.81665
-16.52988 -16.29495 -16.05718 -15.84364 -15.59670 -15.07800 -15.01128 -14.81317
-14.52290 -14.11482 -14.03406 -13.87104 -13.20537 -13.02781 -12.58521 -12.56117
-12.53348 -12.42651 -12.08660 -11.72179 -11.58981 -11.06144 -11.04555 -10.98558
-10.78373 -10.41403 -9.84561 -9.64828 -9.51780 -9.48593 -9.08829 -9.01828
-8.47691 -8.26812 -6.52184 -6.22877 -3.93946 0.12059 0.23704 1.71406
1.78813 2.62930 2.88411 2.93298 3.01446 3.12789 3.22996 3.27631
3.33875 3.55121 3.73987 3.90911 4.14621 4.19226 4.24689 4.33610
4.44681 4.46978 4.75838 4.77413 4.89375 5.09370 5.12368 5.13046
5.21151 5.35071 5.50640 5.54441 5.58561 5.69833 5.82552 5.84125
5.85773 5.92957 6.10926 6.34817 6.45863 6.93253 7.14646 7.57039
7.58899 7.69047 8.33692 8.51218 9.22407 10.84478
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.041494 B = 0.001387 C = 0.001345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.628064 B =20180.151072 C =20816.520344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.074 3.926
3 Si 0.919 3.081
4 H -0.274 1.274
5 H -0.283 1.283
6 H -0.274 1.274
7 C -0.537 4.537
8 H 0.073 0.927
9 S -0.059 6.059
10 C -0.154 4.154
11 C 0.534 3.466
12 O -0.515 6.515
13 N -0.737 5.737
14 C 0.110 3.890
15 C 0.113 3.887
16 N -0.716 5.716
17 C 0.603 3.397
18 O -0.553 6.553
19 C -0.151 4.151
20 C 0.113 3.887
21 N -0.494 5.494
22 C 0.245 3.755
23 C -0.091 4.091
24 C -0.084 4.084
25 C -0.144 4.144
26 C 0.075 3.925
27 N -0.322 5.322
28 H 0.269 0.731
29 H 0.091 0.909
30 H 0.091 0.909
31 H 0.401 0.599
32 H 0.074 0.926
33 H 0.074 0.926
34 H 0.079 0.921
35 H 0.077 0.923
36 H 0.405 0.595
37 H 0.193 0.807
38 H 0.157 0.843
39 H 0.149 0.851
40 H 0.157 0.843
41 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.329 -33.521 -0.851 35.727
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.135 4.135
3 Si 0.745 3.255
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.685 4.685
8 H 0.091 0.909
9 S 0.167 5.833
10 C -0.304 4.304
11 C 0.321 3.679
12 O -0.389 6.389
13 N -0.393 5.393
14 C -0.015 4.015
15 C -0.011 4.011
16 N -0.368 5.368
17 C 0.392 3.608
18 O -0.433 6.433
19 C -0.264 4.264
20 C -0.049 4.049
21 N -0.213 5.213
22 C 0.005 3.995
23 C -0.111 4.111
24 C -0.109 4.109
25 C -0.164 4.164
26 C -0.050 4.050
27 N 0.009 4.991
28 H 0.079 0.921
29 H 0.109 0.891
30 H 0.109 0.891
31 H 0.235 0.765
32 H 0.092 0.908
33 H 0.092 0.908
34 H 0.097 0.903
35 H 0.095 0.905
36 H 0.241 0.759
37 H 0.210 0.790
38 H 0.175 0.825
39 H 0.166 0.834
40 H 0.175 0.825
41 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 10.320 -33.987 -0.827 35.529
hybrid contribution 2.703 1.782 0.041 3.238
sum 13.022 -32.205 -0.786 34.747
Atomic orbital electron populations
1.70005 1.05958 1.27602 1.46713 1.24985 0.95021 0.99017 0.94471
0.86224 0.79241 0.81220 0.78812 1.19929 1.20795 1.19933 1.22830
0.94898 0.91637 1.59179 0.90930 1.85394 1.04808 0.96332 1.96745
1.23533 1.06696 0.95090 1.05105 1.20325 0.86432 0.86211 0.74977
1.90712 1.15326 1.85535 1.47305 1.45798 1.10262 1.04817 1.78377
1.21319 0.95459 0.81364 1.03346 1.21470 0.96440 0.79612 1.03547
1.45359 1.10078 1.05355 1.76028 1.15299 0.85941 0.82848 0.76705
1.90830 1.15085 1.86129 1.51262 1.19722 0.91677 0.87541 1.27506
1.23256 0.94131 0.91964 0.95534 1.70551 1.18156 1.09703 1.22848
1.21160 0.85112 0.89898 1.03300 1.20394 0.96237 0.92539 1.01915
1.21226 0.92328 1.00212 0.97109 1.21020 1.01852 0.90565 1.02999
1.22106 0.82492 1.00361 1.00058 1.42422 1.06676 1.07749 1.42230
0.92103 0.89060 0.89057 0.76472 0.90776 0.90757 0.90320 0.90453
0.75926 0.78995 0.82508 0.83365 0.82507 0.80494
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16
2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16
4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16
8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16
10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16
11 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16
12 O -0.52 -11.19 15.86 5.56 0.09 -11.11 16
13 N -0.74 -8.90 5.56 -60.30 -0.33 -9.24 16
14 C 0.11 1.08 5.79 -4.04 -0.02 1.06 16
15 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16
16 N -0.72 -5.49 5.53 -63.16 -0.35 -5.84 16
17 C 0.60 6.09 7.59 -14.89 -0.11 5.98 16
18 O -0.55 -7.10 15.37 5.12 0.08 -7.02 16
19 C -0.15 -1.44 6.83 -83.48 -0.57 -2.01 16
20 C 0.11 0.94 11.32 -17.23 -0.20 0.74 16
21 N -0.49 -4.99 11.25 -12.27 -0.14 -5.13 16
22 C 0.25 2.23 7.77 -156.06 -1.21 1.02 16
23 C -0.09 -0.52 10.10 -39.37 -0.40 -0.92 16
24 C -0.08 -0.31 10.07 -39.56 -0.40 -0.71 16
25 C -0.14 -0.61 10.00 -39.91 -0.40 -1.01 16
26 C 0.07 0.54 10.51 -16.79 -0.18 0.36 16
27 N -0.32 -3.00 2.96 -60.15 -0.18 -3.17 16
28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16
29 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16
30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16
31 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.07 0.76 8.14 -51.94 -0.42 0.33 16
34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.41 2.11 7.26 -40.82 -0.30 1.82 16
37 H 0.19 0.87 7.37 -52.49 -0.39 0.49 16
38 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16
39 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16
40 H 0.16 0.20 8.06 -52.48 -0.42 -0.23 16
41 H 0.18 1.30 6.81 -52.48 -0.36 0.94 16
LS Contribution 375.02 15.07 5.65 5.65
Total: -1.00 -39.08 375.02 -9.60 -48.68
By element:
Atomic # 1 Polarization: 5.58 SS G_CDS: -4.74 Total: 0.85 kcal
Atomic # 6 Polarization: 2.33 SS G_CDS: -3.18 Total: -0.84 kcal
Atomic # 7 Polarization: -48.36 SS G_CDS: -0.27 Total: -48.62 kcal
Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.13 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -39.08 -9.60 -48.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001740481753.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.147 kcal
(2) G-P(sol) polarization free energy of solvation -39.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds