Wall clock time and date at job start Wed Apr 1 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47275 * 239.99947 * 3 2 1 5 5 H 1.48501 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46758 * 120.00189 * 3 2 1 7 7 C 1.38799 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99736 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47326 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00044 * 180.02562 * 11 10 9 14 14 C 1.46509 * 120.00136 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47249 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.47117 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99679 * 180.02562 * 16 15 14 18 18 O 1.21777 * 120.00410 * 5.04403 * 17 16 15 19 19 C 1.41814 * 119.99441 * 185.05305 * 17 16 15 20 20 C 1.38525 * 126.78900 * 354.91758 * 19 17 16 21 21 N 1.32335 * 108.21545 * 180.02562 * 20 19 17 22 22 C 1.33199 * 109.81031 * 359.97438 * 21 20 19 23 23 C 1.40657 * 131.81243 * 179.97438 * 22 21 20 24 24 C 1.36285 * 119.38533 * 180.02562 * 23 22 21 25 25 C 1.40182 * 119.60506 * 359.69365 * 24 23 22 26 26 C 1.35256 * 120.12250 * 0.59244 * 25 24 23 27 27 N 1.35954 * 120.64463 * 359.43604 * 26 25 24 28 28 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47263 * 60.00317 * 10 9 7 30 30 H 1.08996 * 109.47126 * 300.00436 * 10 9 7 31 31 H 0.97008 * 120.00207 * 359.97438 * 13 11 10 32 32 H 1.08994 * 109.46825 * 59.99962 * 14 13 11 33 33 H 1.08989 * 109.46658 * 299.99822 * 14 13 11 34 34 H 1.09001 * 109.47128 * 59.99581 * 15 14 13 35 35 H 1.09004 * 109.46959 * 299.99992 * 15 14 13 36 36 H 0.96998 * 119.99843 * 0.02562 * 16 15 14 37 37 H 1.07991 * 125.89270 * 0.04271 * 20 19 17 38 38 H 1.08000 * 120.31108 * 359.97438 * 23 22 21 39 39 H 1.07999 * 120.19947 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.93334 * 180.30893 * 25 24 23 41 41 H 1.08003 * 119.67862 * 179.71201 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0007 14 6 2.3304 -7.7151 0.0008 15 6 3.5024 -8.6986 0.0009 16 7 2.9887 -10.0705 0.0016 17 6 3.8455 -11.1109 0.0023 18 8 5.0435 -10.9131 0.0952 19 6 3.3519 -12.4360 -0.1052 20 6 2.0232 -12.8277 -0.1193 21 7 1.9817 -14.1456 -0.2324 22 6 3.2199 -14.6327 -0.2934 23 6 3.7056 -15.9472 -0.4138 24 6 5.0508 -16.1622 -0.4525 25 6 5.9288 -15.0718 -0.3785 26 6 5.4423 -13.8156 -0.2572 27 7 4.1018 -13.5925 -0.2171 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1245 -3.7313 -0.8904 31 1 3.8010 -6.1835 0.0004 32 1 1.7222 -7.8753 -0.8894 33 1 1.7214 -7.8749 0.8905 34 1 4.1110 -8.5384 0.8909 35 1 4.1111 -8.5385 -0.8891 36 1 2.0319 -10.2301 0.0015 37 1 1.1688 -12.1710 -0.0502 38 1 3.0189 -16.7786 -0.4742 39 1 5.4381 -17.1661 -0.5452 40 1 6.9958 -15.2357 -0.4137 41 1 6.1253 -12.9813 -0.1960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740481753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:11 Heat of formation + Delta-G solvation = -9.830261 kcal Electronic energy + Delta-G solvation = -25485.059939 eV Core-core repulsion = 21491.447658 eV Total energy + Delta-G solvation = -3993.612281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.02058 -40.87469 -40.42488 -38.44759 -37.02462 -35.15125 -34.66542 -34.57251 -32.10944 -31.32970 -30.54158 -28.79429 -27.62800 -25.40564 -24.67511 -23.57196 -23.33509 -22.11155 -21.49825 -19.90762 -19.39703 -18.13772 -17.83384 -17.68033 -17.46372 -17.01733 -16.95059 -16.86466 -16.65375 -16.52593 -16.13551 -15.72960 -15.53629 -15.14917 -15.05554 -14.73501 -14.59297 -14.38677 -13.69511 -13.34739 -13.16000 -13.03159 -12.96363 -12.90690 -12.90011 -12.82631 -12.61300 -12.07438 -11.74769 -11.65705 -11.17110 -11.12003 -10.99323 -10.37611 -10.27136 -10.16593 -10.01572 -9.02378 -8.65359 -8.33674 -6.11577 -0.38246 -0.23845 1.12343 1.21274 1.29619 1.44612 1.47397 1.56625 1.59805 1.97990 2.20887 2.28434 2.44727 2.59444 3.00582 3.08246 3.33260 3.41953 3.55751 3.71682 3.79299 3.92918 4.00938 4.01183 4.10833 4.25498 4.32398 4.38705 4.53706 4.55463 4.76784 4.81360 4.86937 5.00916 5.13091 5.16268 5.31847 5.37562 5.42816 5.45549 5.84007 6.20550 6.29140 6.45416 6.56041 6.99768 7.07797 7.20760 8.75192 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.041494 B = 0.001387 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.628064 B =20180.151072 C =20816.520344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.711 5.711 14 C 0.114 3.886 15 C 0.125 3.875 16 N -0.705 5.705 17 C 0.604 3.396 18 O -0.588 6.588 19 C -0.182 4.182 20 C 0.117 3.883 21 N -0.528 5.528 22 C 0.227 3.773 23 C -0.106 4.106 24 C -0.066 4.066 25 C -0.123 4.123 26 C 0.040 3.960 27 N -0.330 5.330 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.419 0.581 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.221 0.779 38 H 0.175 0.825 39 H 0.191 0.809 40 H 0.192 0.808 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.935 -35.221 -1.017 38.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.366 5.366 14 C -0.010 4.010 15 C 0.001 3.999 16 N -0.358 5.358 17 C 0.394 3.606 18 O -0.471 6.471 19 C -0.296 4.296 20 C -0.045 4.045 21 N -0.247 5.247 22 C -0.012 4.012 23 C -0.126 4.126 24 C -0.090 4.090 25 C -0.143 4.143 26 C -0.085 4.085 27 N 0.001 4.999 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.255 0.745 37 H 0.237 0.763 38 H 0.193 0.807 39 H 0.208 0.792 40 H 0.209 0.791 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.963 -35.722 -0.995 38.014 hybrid contribution 2.009 2.048 0.082 2.871 sum 14.973 -33.673 -0.913 36.863 Atomic orbital electron populations 1.70173 1.07949 1.28659 1.47941 1.26100 0.95932 1.03246 0.93716 0.85025 0.77822 0.75813 0.79470 1.18692 1.20429 1.18711 1.23189 0.95389 0.92082 1.58979 0.89879 1.85551 1.10493 0.99179 1.97069 1.23380 1.03621 0.94232 1.07001 1.19996 0.86134 0.86538 0.75017 1.90703 1.17278 1.86016 1.49945 1.45490 1.10600 1.04632 1.75925 1.21380 0.96071 0.80059 1.03486 1.21302 0.95507 0.79308 1.03776 1.45228 1.10601 1.04742 1.75241 1.15406 0.85578 0.83402 0.76190 1.90799 1.16430 1.86600 1.53263 1.19777 0.92339 0.87593 1.29858 1.23742 0.94628 0.91930 0.94208 1.70535 1.19109 1.10495 1.24564 1.21749 0.85058 0.91056 1.03334 1.20826 0.97747 0.91680 1.02330 1.21748 0.91244 1.01863 0.94130 1.21552 1.03742 0.89374 0.99624 1.22353 0.81899 1.01628 1.02572 1.42578 1.07365 1.07699 1.42239 0.92000 0.87061 0.87039 0.74409 0.90657 0.90696 0.90220 0.90151 0.74496 0.76296 0.80730 0.79209 0.79060 0.81444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.65 13.22 21.65 0.29 -55.36 16 2 C 0.01 0.85 5.49 84.86 0.47 1.31 16 3 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.03 9.50 67.95 0.65 -30.38 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.54 18.62 7.85 87.66 0.69 19.31 16 12 O -0.56 -24.69 15.86 -3.04 -0.05 -24.74 16 13 N -0.71 -15.92 5.56 -463.07 -2.57 -18.49 16 14 C 0.11 2.08 5.79 86.38 0.50 2.58 16 15 C 0.13 1.87 5.79 86.38 0.50 2.37 16 16 N -0.71 -10.39 5.53 -471.92 -2.61 -13.00 16 17 C 0.60 12.36 7.59 85.13 0.65 13.00 16 18 O -0.59 -15.45 15.37 -4.60 -0.07 -15.52 16 19 C -0.18 -3.57 6.83 39.08 0.27 -3.31 16 20 C 0.12 1.97 11.32 84.69 0.96 2.93 16 21 N -0.53 -10.78 11.25 -192.73 -2.17 -12.95 16 22 C 0.23 4.09 7.77 134.01 1.04 5.13 16 23 C -0.11 -1.04 10.10 22.41 0.23 -0.82 16 24 C -0.07 -0.27 10.07 22.29 0.22 -0.04 16 25 C -0.12 -0.73 10.00 22.05 0.22 -0.51 16 26 C 0.04 0.57 10.51 83.37 0.88 1.44 16 27 N -0.33 -6.23 2.96 -344.20 -1.02 -7.24 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 31 H 0.42 6.64 8.47 -92.70 -0.79 5.86 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.42 4.02 7.26 -92.71 -0.67 3.35 16 37 H 0.22 1.90 7.37 -2.92 -0.02 1.88 16 38 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 39 H 0.19 -0.80 8.06 -2.91 -0.02 -0.83 16 40 H 0.19 -0.27 8.06 -2.91 -0.02 -0.30 16 41 H 0.17 2.59 6.81 -2.91 -0.02 2.57 16 Total: -1.00 -89.04 375.02 0.00 -89.04 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.36 Total: 13.86 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 7.70 Total: 8.46 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -8.08 Total: -107.05 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.12 Total: -40.25 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -89.04 0.00 -89.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.207 kcal (2) G-P(sol) polarization free energy of solvation -89.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds