Wall clock time and date at job start Wed Apr 1 2020 05:19:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86803 * 119.99994 * 2 1
4 4 H 1.48497 * 109.47275 * 239.99947 * 3 2 1
5 5 H 1.48501 * 109.47035 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46758 * 120.00189 * 3 2 1
7 7 C 1.38799 * 120.00199 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00245 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99736 * 359.97438 * 7 2 1
10 10 C 1.81000 * 100.00062 * 180.02562 * 9 7 2
11 11 C 1.50701 * 109.47326 * 179.97438 * 10 9 7
12 12 O 1.21282 * 120.00007 * 0.02562 * 11 10 9
13 13 N 1.34770 * 120.00044 * 180.02562 * 11 10 9
14 14 C 1.46509 * 120.00136 * 180.02562 * 13 11 10
15 15 C 1.53000 * 109.47249 * 179.97438 * 14 13 11
16 16 N 1.46499 * 109.47117 * 179.97438 * 15 14 13
17 17 C 1.34777 * 119.99679 * 180.02562 * 16 15 14
18 18 O 1.21777 * 120.00410 * 5.04403 * 17 16 15
19 19 C 1.41814 * 119.99441 * 185.05305 * 17 16 15
20 20 C 1.38525 * 126.78900 * 354.91758 * 19 17 16
21 21 N 1.32335 * 108.21545 * 180.02562 * 20 19 17
22 22 C 1.33199 * 109.81031 * 359.97438 * 21 20 19
23 23 C 1.40657 * 131.81243 * 179.97438 * 22 21 20
24 24 C 1.36285 * 119.38533 * 180.02562 * 23 22 21
25 25 C 1.40182 * 119.60506 * 359.69365 * 24 23 22
26 26 C 1.35256 * 120.12250 * 0.59244 * 25 24 23
27 27 N 1.35954 * 120.64463 * 359.43604 * 26 25 24
28 28 H 0.97003 * 120.00068 * 359.97438 * 1 2 3
29 29 H 1.09007 * 109.47263 * 60.00317 * 10 9 7
30 30 H 1.08996 * 109.47126 * 300.00436 * 10 9 7
31 31 H 0.97008 * 120.00207 * 359.97438 * 13 11 10
32 32 H 1.08994 * 109.46825 * 59.99962 * 14 13 11
33 33 H 1.08989 * 109.46658 * 299.99822 * 14 13 11
34 34 H 1.09001 * 109.47128 * 59.99581 * 15 14 13
35 35 H 1.09004 * 109.46959 * 299.99992 * 15 14 13
36 36 H 0.96998 * 119.99843 * 0.02562 * 16 15 14
37 37 H 1.07991 * 125.89270 * 0.04271 * 20 19 17
38 38 H 1.08000 * 120.31108 * 359.97438 * 23 22 21
39 39 H 1.07999 * 120.19947 * 180.02562 * 24 23 22
40 40 H 1.08004 * 119.93334 * 180.30893 * 25 24 23
41 41 H 1.08003 * 119.67862 * 179.71201 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1041 1.6965 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 16 1.1293 -2.7279 -0.0005
10 6 2.5158 -3.8914 -0.0005
11 6 1.9874 -5.3027 0.0001
12 8 0.7911 -5.5023 0.0000
13 7 2.8441 -6.3431 0.0007
14 6 2.3304 -7.7151 0.0008
15 6 3.5024 -8.6986 0.0009
16 7 2.9887 -10.0705 0.0016
17 6 3.8455 -11.1109 0.0023
18 8 5.0435 -10.9131 0.0952
19 6 3.3519 -12.4360 -0.1052
20 6 2.0232 -12.8277 -0.1193
21 7 1.9817 -14.1456 -0.2324
22 6 3.2199 -14.6327 -0.2934
23 6 3.7056 -15.9472 -0.4138
24 6 5.0508 -16.1622 -0.4525
25 6 5.9288 -15.0718 -0.3785
26 6 5.4423 -13.8156 -0.2572
27 7 4.1018 -13.5925 -0.2171
28 1 -0.4850 0.8401 0.0004
29 1 3.1245 -3.7314 0.8895
30 1 3.1245 -3.7313 -0.8904
31 1 3.8010 -6.1835 0.0004
32 1 1.7222 -7.8753 -0.8894
33 1 1.7214 -7.8749 0.8905
34 1 4.1110 -8.5384 0.8909
35 1 4.1111 -8.5385 -0.8891
36 1 2.0319 -10.2301 0.0015
37 1 1.1688 -12.1710 -0.0502
38 1 3.0189 -16.7786 -0.4742
39 1 5.4381 -17.1661 -0.5452
40 1 6.9958 -15.2357 -0.4137
41 1 6.1253 -12.9813 -0.1960
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001740481753.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:11
Heat of formation + Delta-G solvation = -9.830261 kcal
Electronic energy + Delta-G solvation = -25485.059939 eV
Core-core repulsion = 21491.447658 eV
Total energy + Delta-G solvation = -3993.612281 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.104 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-44.02058 -40.87469 -40.42488 -38.44759 -37.02462 -35.15125 -34.66542 -34.57251
-32.10944 -31.32970 -30.54158 -28.79429 -27.62800 -25.40564 -24.67511 -23.57196
-23.33509 -22.11155 -21.49825 -19.90762 -19.39703 -18.13772 -17.83384 -17.68033
-17.46372 -17.01733 -16.95059 -16.86466 -16.65375 -16.52593 -16.13551 -15.72960
-15.53629 -15.14917 -15.05554 -14.73501 -14.59297 -14.38677 -13.69511 -13.34739
-13.16000 -13.03159 -12.96363 -12.90690 -12.90011 -12.82631 -12.61300 -12.07438
-11.74769 -11.65705 -11.17110 -11.12003 -10.99323 -10.37611 -10.27136 -10.16593
-10.01572 -9.02378 -8.65359 -8.33674 -6.11577 -0.38246 -0.23845 1.12343
1.21274 1.29619 1.44612 1.47397 1.56625 1.59805 1.97990 2.20887
2.28434 2.44727 2.59444 3.00582 3.08246 3.33260 3.41953 3.55751
3.71682 3.79299 3.92918 4.00938 4.01183 4.10833 4.25498 4.32398
4.38705 4.53706 4.55463 4.76784 4.81360 4.86937 5.00916 5.13091
5.16268 5.31847 5.37562 5.42816 5.45549 5.84007 6.20550 6.29140
6.45416 6.56041 6.99768 7.07797 7.20760 8.75192
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.041494 B = 0.001387 C = 0.001345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.628064 B =20180.151072 C =20816.520344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.015 3.985
3 Si 0.997 3.003
4 H -0.262 1.262
5 H -0.279 1.279
6 H -0.262 1.262
7 C -0.549 4.549
8 H 0.083 0.917
9 S -0.150 6.150
10 C -0.131 4.131
11 C 0.537 3.463
12 O -0.562 6.562
13 N -0.711 5.711
14 C 0.114 3.886
15 C 0.125 3.875
16 N -0.705 5.705
17 C 0.604 3.396
18 O -0.588 6.588
19 C -0.182 4.182
20 C 0.117 3.883
21 N -0.528 5.528
22 C 0.227 3.773
23 C -0.106 4.106
24 C -0.066 4.066
25 C -0.123 4.123
26 C 0.040 3.960
27 N -0.330 5.330
28 H 0.271 0.729
29 H 0.111 0.889
30 H 0.111 0.889
31 H 0.419 0.581
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.417 0.583
37 H 0.221 0.779
38 H 0.175 0.825
39 H 0.191 0.809
40 H 0.192 0.808
41 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.935 -35.221 -1.017 38.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.190 4.190
3 Si 0.819 3.181
4 H -0.187 1.187
5 H -0.204 1.204
6 H -0.187 1.187
7 C -0.696 4.696
8 H 0.101 0.899
9 S 0.077 5.923
10 C -0.282 4.282
11 C 0.323 3.677
12 O -0.439 6.439
13 N -0.366 5.366
14 C -0.010 4.010
15 C 0.001 3.999
16 N -0.358 5.358
17 C 0.394 3.606
18 O -0.471 6.471
19 C -0.296 4.296
20 C -0.045 4.045
21 N -0.247 5.247
22 C -0.012 4.012
23 C -0.126 4.126
24 C -0.090 4.090
25 C -0.143 4.143
26 C -0.085 4.085
27 N 0.001 4.999
28 H 0.080 0.920
29 H 0.129 0.871
30 H 0.130 0.870
31 H 0.256 0.744
32 H 0.093 0.907
33 H 0.093 0.907
34 H 0.098 0.902
35 H 0.098 0.902
36 H 0.255 0.745
37 H 0.237 0.763
38 H 0.193 0.807
39 H 0.208 0.792
40 H 0.209 0.791
41 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 12.963 -35.722 -0.995 38.014
hybrid contribution 2.009 2.048 0.082 2.871
sum 14.973 -33.673 -0.913 36.863
Atomic orbital electron populations
1.70173 1.07949 1.28659 1.47941 1.26100 0.95932 1.03246 0.93716
0.85025 0.77822 0.75813 0.79470 1.18692 1.20429 1.18711 1.23189
0.95389 0.92082 1.58979 0.89879 1.85551 1.10493 0.99179 1.97069
1.23380 1.03621 0.94232 1.07001 1.19996 0.86134 0.86538 0.75017
1.90703 1.17278 1.86016 1.49945 1.45490 1.10600 1.04632 1.75925
1.21380 0.96071 0.80059 1.03486 1.21302 0.95507 0.79308 1.03776
1.45228 1.10601 1.04742 1.75241 1.15406 0.85578 0.83402 0.76190
1.90799 1.16430 1.86600 1.53263 1.19777 0.92339 0.87593 1.29858
1.23742 0.94628 0.91930 0.94208 1.70535 1.19109 1.10495 1.24564
1.21749 0.85058 0.91056 1.03334 1.20826 0.97747 0.91680 1.02330
1.21748 0.91244 1.01863 0.94130 1.21552 1.03742 0.89374 0.99624
1.22353 0.81899 1.01628 1.02572 1.42578 1.07365 1.07699 1.42239
0.92000 0.87061 0.87039 0.74409 0.90657 0.90696 0.90220 0.90151
0.74496 0.76296 0.80730 0.79209 0.79060 0.81444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.65 13.22 21.65 0.29 -55.36 16
2 C 0.01 0.85 5.49 84.86 0.47 1.31 16
3 Si 1.00 43.28 29.55 68.60 2.03 45.31 16
4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16
5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16
6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16
7 C -0.55 -31.03 9.50 67.95 0.65 -30.38 16
8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16
9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16
10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16
11 C 0.54 18.62 7.85 87.66 0.69 19.31 16
12 O -0.56 -24.69 15.86 -3.04 -0.05 -24.74 16
13 N -0.71 -15.92 5.56 -463.07 -2.57 -18.49 16
14 C 0.11 2.08 5.79 86.38 0.50 2.58 16
15 C 0.13 1.87 5.79 86.38 0.50 2.37 16
16 N -0.71 -10.39 5.53 -471.92 -2.61 -13.00 16
17 C 0.60 12.36 7.59 85.13 0.65 13.00 16
18 O -0.59 -15.45 15.37 -4.60 -0.07 -15.52 16
19 C -0.18 -3.57 6.83 39.08 0.27 -3.31 16
20 C 0.12 1.97 11.32 84.69 0.96 2.93 16
21 N -0.53 -10.78 11.25 -192.73 -2.17 -12.95 16
22 C 0.23 4.09 7.77 134.01 1.04 5.13 16
23 C -0.11 -1.04 10.10 22.41 0.23 -0.82 16
24 C -0.07 -0.27 10.07 22.29 0.22 -0.04 16
25 C -0.12 -0.73 10.00 22.05 0.22 -0.51 16
26 C 0.04 0.57 10.51 83.37 0.88 1.44 16
27 N -0.33 -6.23 2.96 -344.20 -1.02 -7.24 16
28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16
29 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16
30 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16
31 H 0.42 6.64 8.47 -92.70 -0.79 5.86 16
32 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16
33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
35 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16
36 H 0.42 4.02 7.26 -92.71 -0.67 3.35 16
37 H 0.22 1.90 7.37 -2.92 -0.02 1.88 16
38 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16
39 H 0.19 -0.80 8.06 -2.91 -0.02 -0.83 16
40 H 0.19 -0.27 8.06 -2.91 -0.02 -0.30 16
41 H 0.17 2.59 6.81 -2.91 -0.02 2.57 16
Total: -1.00 -89.04 375.02 0.00 -89.04
By element:
Atomic # 1 Polarization: 14.22 SS G_CDS: -0.36 Total: 13.86 kcal
Atomic # 6 Polarization: 0.76 SS G_CDS: 7.70 Total: 8.46 kcal
Atomic # 7 Polarization: -98.97 SS G_CDS: -8.08 Total: -107.05 kcal
Atomic # 8 Polarization: -40.13 SS G_CDS: -0.12 Total: -40.25 kcal
Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal
Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal
Total: -89.04 0.00 -89.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001740481753.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.207 kcal
(2) G-P(sol) polarization free energy of solvation -89.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.830 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds