Wall clock time and date at job start Wed Apr 1 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99545 * 2 1 4 4 H 1.48494 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47207 * 299.99889 * 3 2 1 6 6 H 1.48504 * 109.47359 * 59.99728 * 3 2 1 7 7 C 1.38790 * 120.00640 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00442 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99902 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46909 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00271 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00125 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00379 * 180.02562 * 13 11 10 15 15 H 1.09003 * 115.51408 * 350.41140 * 14 13 11 16 16 C 1.53006 * 117.44288 * 205.00352 * 14 13 11 17 17 H 1.08996 * 119.54326 * 4.15803 * 16 14 13 18 18 C 1.54388 * 118.12063 * 160.85073 * 16 14 13 19 19 N 1.48148 * 104.61931 * 87.19034 * 18 16 14 20 20 C 1.34771 * 127.84236 * 140.43325 * 19 18 16 21 21 O 1.21517 * 120.00258 * 179.97438 * 20 19 18 22 22 C 1.48151 * 119.99771 * 359.97438 * 20 19 18 23 23 C 1.39446 * 120.09911 * 179.97438 * 22 20 19 24 24 N 1.32071 * 119.87596 * 180.02562 * 23 22 20 25 25 C 1.32142 * 120.07016 * 359.97438 * 24 23 22 26 26 C 1.38723 * 120.19613 * 0.02562 * 25 24 23 27 27 N 1.31802 * 120.12646 * 359.71419 * 26 25 24 28 28 C 1.48153 * 104.32136 * 320.41172 * 19 18 16 29 29 C 1.53002 * 117.40882 * 135.77541 * 14 13 11 30 30 H 1.08994 * 119.54039 * 355.89715 * 29 14 13 31 31 H 0.96993 * 120.00538 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47323 * 59.99991 * 10 9 7 33 33 H 1.09001 * 109.47442 * 300.00105 * 10 9 7 34 34 H 0.97010 * 119.99739 * 0.02562 * 13 11 10 35 35 H 1.09002 * 110.40850 * 205.96965 * 18 16 14 36 36 H 1.09000 * 110.40987 * 328.40547 * 18 16 14 37 37 H 1.07998 * 120.06243 * 0.02562 * 23 22 20 38 38 H 1.08002 * 119.90064 * 180.02562 * 25 24 23 39 39 H 1.08002 * 119.93685 * 180.02562 * 26 25 24 40 40 H 1.08998 * 110.40523 * 280.80057 * 28 19 18 41 41 H 1.09000 * 110.40541 * 158.36775 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2018 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5162 -3.8912 0.0005 11 6 1.9878 -5.3026 -0.0001 12 8 0.7916 -5.5023 -0.0010 13 7 2.8446 -6.3429 -0.0007 14 6 2.3310 -7.7149 -0.0019 15 1 1.2579 -7.8147 0.1616 16 6 3.2362 -8.8072 0.5714 17 1 4.1911 -8.5333 1.0199 18 6 2.5865 -10.1413 0.9974 19 7 2.5721 -10.9610 -0.2366 20 6 2.8205 -12.2803 -0.3558 21 8 2.7684 -12.8122 -1.4472 22 6 3.1572 -13.0819 0.8437 23 6 3.4142 -14.4472 0.7228 24 7 3.7135 -15.1578 1.7951 25 6 3.7698 -14.5761 2.9803 26 6 3.5147 -13.2182 3.1039 27 7 3.2204 -12.5006 2.0382 28 6 2.2220 -10.0016 -1.3098 29 6 2.9959 -8.7150 -0.9499 30 1 3.7717 -8.3725 -1.6345 31 1 -0.4850 0.8399 -0.0004 32 1 3.1248 -3.7311 0.8905 33 1 3.1248 -3.7311 -0.8894 34 1 3.8014 -6.1832 -0.0004 35 1 3.1849 -10.6263 1.7687 36 1 1.5702 -9.9726 1.3535 37 1 3.3686 -14.9226 -0.2458 38 1 4.0152 -15.1597 3.8553 39 1 3.5624 -12.7470 4.0746 40 1 1.1488 -9.8110 -1.3140 41 1 2.5453 -10.3810 -2.2791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744554872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:46 Heat of formation + Delta-G solvation = 35.495415 kcal Electronic energy + Delta-G solvation = -26088.007586 eV Core-core repulsion = 22096.360773 eV Total energy + Delta-G solvation = -3991.646812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89873 -40.67435 -39.28097 -38.31487 -35.33500 -34.62408 -32.63344 -32.46174 -32.13044 -29.23384 -28.89211 -26.88030 -25.55095 -25.32721 -24.71631 -21.83187 -20.90890 -20.53951 -20.42175 -18.48485 -17.92014 -17.71194 -17.42687 -16.89760 -16.53533 -16.21072 -15.98501 -15.31436 -15.06152 -14.93656 -14.83680 -14.29727 -14.02663 -13.82341 -13.55884 -13.49990 -13.16050 -13.00217 -12.76789 -12.59008 -12.39846 -12.00732 -11.91936 -11.66029 -11.10036 -11.05979 -10.99522 -10.96670 -10.79897 -10.28338 -10.10497 -9.84501 -9.70481 -9.52832 -9.15127 -9.10895 -8.81205 -8.28521 -6.54466 -6.25282 -3.96352 -0.23333 0.38273 2.17322 2.28626 2.78538 2.84231 3.16634 3.19326 3.23769 3.26245 3.29081 3.41492 3.54697 3.56319 3.77137 4.07488 4.16629 4.36286 4.39167 4.45486 4.50092 4.55594 4.72223 4.85995 4.88067 5.01500 5.10212 5.13302 5.39487 5.46382 5.50765 5.57911 5.61416 5.73139 5.81167 5.83807 5.91228 6.06988 6.43556 6.47417 6.93406 7.05840 7.53500 7.56045 7.56892 8.31887 8.46235 9.20327 10.82183 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.001611 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.648340 B =17381.562948 C =17784.599029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.538 3.462 12 O -0.511 6.511 13 N -0.710 5.710 14 C 0.136 3.864 15 H 0.140 0.860 16 C -0.187 4.187 17 H 0.124 0.876 18 C 0.118 3.882 19 N -0.601 5.601 20 C 0.595 3.405 21 O -0.528 6.528 22 C 0.035 3.965 23 C 0.111 3.889 24 N -0.439 5.439 25 C 0.073 3.927 26 C 0.050 3.950 27 N -0.408 5.408 28 C 0.134 3.866 29 C -0.191 4.191 30 H 0.124 0.876 31 H 0.268 0.732 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.084 0.916 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 -28.103 5.914 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.361 5.361 14 C 0.028 3.972 15 H 0.157 0.843 16 C -0.208 4.208 17 H 0.141 0.859 18 C -0.005 4.005 19 N -0.333 5.333 20 C 0.382 3.618 21 O -0.404 6.404 22 C -0.106 4.106 23 C -0.048 4.048 24 N -0.152 5.152 25 C -0.087 4.087 26 C -0.112 4.112 27 N -0.126 5.126 28 C 0.012 3.988 29 C -0.212 4.212 30 H 0.142 0.858 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.201 0.799 38 H 0.195 0.805 39 H 0.198 0.802 40 H 0.102 0.898 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.425 -28.701 5.260 30.371 hybrid contribution 2.630 1.467 0.126 3.014 sum 11.055 -27.235 5.386 29.882 Atomic orbital electron populations 1.70021 1.05952 1.27419 1.46837 1.24993 0.95031 0.99058 0.94483 0.86110 0.79565 0.81844 0.77931 1.19624 1.20541 1.20549 1.22904 0.94957 0.91584 1.58991 0.90823 1.85423 1.04665 0.96347 1.96732 1.23536 1.06800 0.94941 1.05136 1.20367 0.86455 0.86109 0.74572 1.90709 1.15316 1.85423 1.46959 1.45384 1.09993 1.03794 1.76936 1.21564 0.98105 0.78877 0.98698 0.84286 1.24231 1.02758 0.97148 0.96616 0.85852 1.22397 1.02254 0.88143 0.87694 1.49021 1.66725 1.06642 1.10864 1.17157 0.77480 0.80305 0.86895 1.90835 1.52891 1.70298 1.26413 1.22122 1.01443 0.94057 0.92951 1.23858 0.91280 0.90529 0.99165 1.68663 1.09562 1.38091 0.98934 1.24170 0.93650 0.94268 0.96653 1.24009 0.95892 0.92749 0.98592 1.68460 1.07952 1.37651 0.98513 1.21813 0.99386 0.85854 0.91739 1.24228 1.04806 0.98716 0.93456 0.85776 0.92186 0.89000 0.89020 0.76438 0.85665 0.90361 0.79914 0.80501 0.80228 0.89802 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 11 C 0.54 9.40 7.85 -10.99 -0.09 9.32 16 12 O -0.51 -10.98 15.43 5.56 0.09 -10.90 16 13 N -0.71 -8.63 5.56 -53.80 -0.30 -8.92 16 14 C 0.14 1.45 5.98 -67.93 -0.41 1.04 16 15 H 0.14 1.72 7.40 -51.93 -0.38 1.34 16 16 C -0.19 -1.53 7.06 -89.21 -0.63 -2.16 16 17 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.12 0.95 6.35 -2.41 -0.02 0.94 16 19 N -0.60 -5.76 3.32 -170.30 -0.56 -6.32 16 20 C 0.60 6.34 7.91 -12.19 -0.10 6.25 16 21 O -0.53 -6.94 16.61 5.35 0.09 -6.85 16 22 C 0.04 0.30 6.73 -82.84 -0.56 -0.25 16 23 C 0.11 0.88 10.77 -17.00 -0.18 0.70 16 24 N -0.44 -3.19 10.49 -12.71 -0.13 -3.32 16 25 C 0.07 0.32 11.23 -17.24 -0.19 0.13 16 26 C 0.05 0.21 11.22 -17.39 -0.20 0.02 16 27 N -0.41 -2.92 6.80 -9.61 -0.07 -2.99 16 28 C 0.13 1.24 6.85 -2.40 -0.02 1.23 16 29 C -0.19 -1.70 7.06 -89.21 -0.63 -2.33 16 30 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.40 3.70 8.83 -40.82 -0.36 3.34 16 35 H 0.13 0.94 5.15 -51.93 -0.27 0.67 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.18 1.30 7.65 -52.49 -0.40 0.90 16 38 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 39 H 0.18 0.15 8.06 -52.49 -0.42 -0.28 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -36.59 371.01 -9.14 -45.73 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.75 Total: 1.28 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.59 Total: -0.55 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.33 Total: -46.60 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.59 -9.14 -45.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744554872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.221 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds