Wall clock time and date at job start Wed Apr 1 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99545 * 2 1 4 4 H 1.48494 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47207 * 299.99889 * 3 2 1 6 6 H 1.48504 * 109.47359 * 59.99728 * 3 2 1 7 7 C 1.38790 * 120.00640 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00442 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99902 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46909 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00271 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00125 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00379 * 180.02562 * 13 11 10 15 15 H 1.09003 * 115.51408 * 350.41140 * 14 13 11 16 16 C 1.53006 * 117.44288 * 205.00352 * 14 13 11 17 17 H 1.08996 * 119.54326 * 4.15803 * 16 14 13 18 18 C 1.54388 * 118.12063 * 160.85073 * 16 14 13 19 19 N 1.48148 * 104.61931 * 87.19034 * 18 16 14 20 20 C 1.34771 * 127.84236 * 140.43325 * 19 18 16 21 21 O 1.21517 * 120.00258 * 179.97438 * 20 19 18 22 22 C 1.48151 * 119.99771 * 359.97438 * 20 19 18 23 23 C 1.39446 * 120.09911 * 179.97438 * 22 20 19 24 24 N 1.32071 * 119.87596 * 180.02562 * 23 22 20 25 25 C 1.32142 * 120.07016 * 359.97438 * 24 23 22 26 26 C 1.38723 * 120.19613 * 0.02562 * 25 24 23 27 27 N 1.31802 * 120.12646 * 359.71419 * 26 25 24 28 28 C 1.48153 * 104.32136 * 320.41172 * 19 18 16 29 29 C 1.53002 * 117.40882 * 135.77541 * 14 13 11 30 30 H 1.08994 * 119.54039 * 355.89715 * 29 14 13 31 31 H 0.96993 * 120.00538 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47323 * 59.99991 * 10 9 7 33 33 H 1.09001 * 109.47442 * 300.00105 * 10 9 7 34 34 H 0.97010 * 119.99739 * 0.02562 * 13 11 10 35 35 H 1.09002 * 110.40850 * 205.96965 * 18 16 14 36 36 H 1.09000 * 110.40987 * 328.40547 * 18 16 14 37 37 H 1.07998 * 120.06243 * 0.02562 * 23 22 20 38 38 H 1.08002 * 119.90064 * 180.02562 * 25 24 23 39 39 H 1.08002 * 119.93685 * 180.02562 * 26 25 24 40 40 H 1.08998 * 110.40523 * 280.80057 * 28 19 18 41 41 H 1.09000 * 110.40541 * 158.36775 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2018 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5162 -3.8912 0.0005 11 6 1.9878 -5.3026 -0.0001 12 8 0.7916 -5.5023 -0.0010 13 7 2.8446 -6.3429 -0.0007 14 6 2.3310 -7.7149 -0.0019 15 1 1.2579 -7.8147 0.1616 16 6 3.2362 -8.8072 0.5714 17 1 4.1911 -8.5333 1.0199 18 6 2.5865 -10.1413 0.9974 19 7 2.5721 -10.9610 -0.2366 20 6 2.8205 -12.2803 -0.3558 21 8 2.7684 -12.8122 -1.4472 22 6 3.1572 -13.0819 0.8437 23 6 3.4142 -14.4472 0.7228 24 7 3.7135 -15.1578 1.7951 25 6 3.7698 -14.5761 2.9803 26 6 3.5147 -13.2182 3.1039 27 7 3.2204 -12.5006 2.0382 28 6 2.2220 -10.0016 -1.3098 29 6 2.9959 -8.7150 -0.9499 30 1 3.7717 -8.3725 -1.6345 31 1 -0.4850 0.8399 -0.0004 32 1 3.1248 -3.7311 0.8905 33 1 3.1248 -3.7311 -0.8894 34 1 3.8014 -6.1832 -0.0004 35 1 3.1849 -10.6263 1.7687 36 1 1.5702 -9.9726 1.3535 37 1 3.3686 -14.9226 -0.2458 38 1 4.0152 -15.1597 3.8553 39 1 3.5624 -12.7470 4.0746 40 1 1.1488 -9.8110 -1.3140 41 1 2.5453 -10.3810 -2.2791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744554872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:45 Heat of formation + Delta-G solvation = 8.321730 kcal Electronic energy + Delta-G solvation = -26089.185925 eV Core-core repulsion = 22096.360773 eV Total energy + Delta-G solvation = -3992.825152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43707 -41.46780 -40.40195 -39.30486 -36.09297 -35.39055 -34.57432 -33.58043 -32.72289 -30.63894 -29.62041 -27.76501 -27.49950 -25.87440 -25.29204 -22.73495 -21.88293 -21.48515 -21.20015 -19.82165 -19.06768 -18.25910 -18.08333 -17.88073 -17.70642 -17.00862 -16.87257 -16.76854 -16.38963 -16.02764 -15.73184 -15.64902 -14.94261 -14.71396 -14.67129 -14.48531 -14.05780 -13.97933 -13.79380 -13.75086 -13.40122 -13.14971 -12.93963 -12.88417 -12.59289 -12.45947 -12.28269 -11.88822 -11.76630 -11.71306 -11.14939 -11.12979 -10.95826 -10.58535 -10.26086 -10.19500 -9.91970 -9.80854 -8.65260 -8.33959 -6.11667 -0.73420 -0.06013 1.24499 1.42289 1.43803 1.49334 1.51272 1.56514 1.62231 2.12974 2.28066 2.51179 2.66184 2.79255 3.00590 3.14050 3.29995 3.33891 3.48135 3.57661 3.62207 3.74573 3.90208 3.98415 4.06012 4.18068 4.27625 4.32021 4.40572 4.50973 4.52483 4.64647 4.72186 4.86006 4.96197 4.99091 5.09340 5.36174 5.43496 5.44012 5.99252 6.21134 6.25004 6.44393 6.53964 6.80410 7.07883 7.19646 8.75400 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.001611 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.648340 B =17381.562948 C =17784.599029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.542 3.458 12 O -0.560 6.560 13 N -0.683 5.683 14 C 0.113 3.887 15 H 0.118 0.882 16 C -0.159 4.159 17 H 0.147 0.853 18 C 0.119 3.881 19 N -0.601 5.601 20 C 0.591 3.409 21 O -0.565 6.565 22 C 0.014 3.986 23 C 0.102 3.898 24 N -0.461 5.461 25 C 0.087 3.913 26 C 0.059 3.941 27 N -0.420 5.420 28 C 0.129 3.871 29 C -0.180 4.180 30 H 0.137 0.863 31 H 0.271 0.729 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.420 0.580 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.178 0.822 38 H 0.218 0.782 39 H 0.222 0.778 40 H 0.081 0.919 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.652 -28.631 7.873 32.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.328 3.672 12 O -0.437 6.437 13 N -0.334 5.334 14 C 0.005 3.995 15 H 0.136 0.864 16 C -0.179 4.179 17 H 0.165 0.835 18 C -0.003 4.003 19 N -0.332 5.332 20 C 0.379 3.621 21 O -0.444 6.444 22 C -0.124 4.124 23 C -0.056 4.056 24 N -0.175 5.175 25 C -0.075 4.075 26 C -0.104 4.104 27 N -0.138 5.138 28 C 0.007 3.993 29 C -0.201 4.201 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.258 0.742 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.195 0.805 38 H 0.235 0.765 39 H 0.238 0.762 40 H 0.099 0.901 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.506 -29.257 7.195 32.251 hybrid contribution 1.731 1.426 -0.356 2.271 sum 13.237 -27.830 6.839 31.568 Atomic orbital electron populations 1.70185 1.07963 1.28534 1.48112 1.26111 0.95941 1.03297 0.93787 0.84914 0.78656 0.76417 0.78009 1.17972 1.20083 1.19983 1.23248 0.95407 0.91981 1.58680 0.89780 1.85605 1.10447 0.99229 1.97057 1.23366 1.03656 0.93912 1.07118 1.20053 0.86133 0.86477 0.74530 1.90702 1.17404 1.85927 1.49711 1.44990 1.10277 1.03315 1.74844 1.21545 0.97754 0.78443 1.01735 0.86394 1.24283 1.02361 0.95390 0.95912 0.83521 1.22496 1.02569 0.87876 0.87390 1.49089 1.66233 1.06574 1.11340 1.17529 0.76828 0.80513 0.87243 1.90800 1.54615 1.71003 1.27964 1.21762 1.03739 0.93978 0.92954 1.23785 0.91803 0.90440 0.99564 1.68705 1.10472 1.38591 0.99763 1.24913 0.91113 0.94810 0.96694 1.24729 0.93728 0.92822 0.99127 1.68380 1.08525 1.38322 0.98573 1.21830 0.99430 0.86214 0.91808 1.24163 1.04245 0.97316 0.94375 0.84519 0.92019 0.86785 0.87005 0.74230 0.84393 0.90468 0.80502 0.76542 0.76188 0.90081 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 2 C 0.01 0.75 5.49 84.85 0.47 1.22 16 3 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -30.47 9.50 67.95 0.65 -29.83 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 11 C 0.54 18.61 7.85 87.66 0.69 19.30 16 12 O -0.56 -24.72 15.43 -3.02 -0.05 -24.77 16 13 N -0.68 -15.30 5.56 -442.53 -2.46 -17.76 16 14 C 0.11 2.27 5.98 45.00 0.27 2.54 16 15 H 0.12 2.97 7.40 -2.39 -0.02 2.96 16 16 C -0.16 -2.22 7.06 -9.88 -0.07 -2.29 16 17 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 18 C 0.12 1.73 6.35 86.53 0.55 2.28 16 19 N -0.60 -11.30 3.32 -810.99 -2.69 -13.99 16 20 C 0.59 12.83 7.91 86.88 0.69 13.51 16 21 O -0.56 -15.61 16.61 -3.77 -0.06 -15.67 16 22 C 0.01 0.24 6.73 41.89 0.28 0.52 16 23 C 0.10 1.62 10.77 84.95 0.92 2.53 16 24 N -0.46 -6.04 10.49 -194.12 -2.04 -8.08 16 25 C 0.09 0.47 11.23 84.76 0.95 1.42 16 26 C 0.06 0.30 11.22 84.81 0.95 1.25 16 27 N -0.42 -5.14 6.80 -184.33 -1.25 -6.40 16 28 C 0.13 2.39 6.85 86.53 0.59 2.99 16 29 C -0.18 -2.94 7.06 -9.88 -0.07 -3.01 16 30 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 33 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.42 6.35 8.83 -92.70 -0.82 5.54 16 35 H 0.14 1.73 5.15 -2.39 -0.01 1.71 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.18 2.77 7.65 -2.91 -0.02 2.75 16 38 H 0.22 -0.70 8.06 -2.91 -0.02 -0.72 16 39 H 0.22 -0.80 8.06 -2.91 -0.02 -0.82 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.72 7.88 -2.39 -0.02 1.70 16 Total: -1.00 -83.94 371.01 0.17 -83.77 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.27 Total: 14.25 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 7.30 Total: 8.06 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -8.15 Total: -101.27 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.11 Total: -40.44 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -83.94 0.17 -83.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744554872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.089 kcal (2) G-P(sol) polarization free energy of solvation -83.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds