Wall clock time and date at job start Wed Apr 1 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48494 * 109.47510 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46825 * 300.00131 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.99764 * 3 2 1 7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99986 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47036 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00164 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99930 * 179.97438 * 11 10 9 14 14 C 1.47065 * 136.05414 * 4.93596 * 13 11 10 15 15 C 1.53494 * 87.98651 * 152.91151 * 14 13 11 16 16 C 1.47065 * 136.06177 * 184.98064 * 13 11 10 17 17 H 1.09000 * 113.46707 * 92.24562 * 16 13 11 18 18 C 1.52998 * 113.46579 * 321.87377 * 16 13 11 19 19 N 1.46496 * 109.47251 * 175.90127 * 18 16 13 20 20 C 1.34781 * 120.00506 * 175.02319 * 19 18 16 21 21 O 1.21283 * 119.99468 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00083 * 180.02562 * 20 19 18 23 23 H 1.09000 * 115.55093 * 325.71526 * 22 20 19 24 24 C 1.53000 * 117.49825 * 111.39226 * 22 20 19 25 25 C 1.52998 * 60.03170 * 107.47190 * 24 22 20 26 26 H 1.08998 * 117.50379 * 252.51570 * 25 24 22 27 27 C 1.53004 * 117.50047 * 107.50029 * 25 24 22 28 28 F 1.39904 * 109.47285 * 231.39202 * 27 25 24 29 29 F 1.39899 * 109.46919 * 351.38827 * 27 25 24 30 30 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46712 * 59.99687 * 10 9 7 32 32 H 1.09000 * 109.46997 * 300.00191 * 10 9 7 33 33 H 1.08997 * 113.46834 * 267.69197 * 14 13 11 34 34 H 1.08998 * 113.47017 * 38.13446 * 14 13 11 35 35 H 1.08997 * 114.21156 * 272.48463 * 15 14 13 36 36 H 1.09004 * 114.21123 * 139.64913 * 15 14 13 37 37 H 1.08999 * 109.47570 * 55.89818 * 18 16 13 38 38 H 1.09006 * 109.46991 * 295.89651 * 18 16 13 39 39 H 0.97007 * 120.00026 * 355.01768 * 19 18 16 40 40 H 1.09002 * 117.49264 * 214.97611 * 24 22 20 41 41 H 1.08995 * 117.49806 * 359.97114 * 24 22 20 42 42 H 1.08994 * 109.47472 * 111.38884 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0018 14 6 4.3024 -6.5141 0.0857 15 6 4.0488 -7.9008 0.6932 16 6 2.7328 -7.8068 -0.0911 17 1 2.8056 -8.1863 -1.1103 18 6 1.5302 -8.3735 0.6662 19 7 1.4470 -9.8184 0.4396 20 6 0.5213 -10.5505 1.0904 21 8 -0.2425 -10.0131 1.8641 22 6 0.4362 -12.0370 0.8576 23 1 0.6692 -12.3685 -0.1543 24 6 0.8373 -12.9570 2.0124 25 6 -0.6362 -12.8124 1.6269 26 1 -1.2797 -12.2471 2.3010 27 6 -1.3000 -13.9941 0.9169 28 9 -1.9330 -13.5433 -0.2465 29 9 -0.3277 -14.9423 0.5812 30 1 -0.4850 0.8400 -0.0004 31 1 3.1246 -3.7312 0.8895 32 1 3.1246 -3.7313 -0.8905 33 1 4.7944 -6.5494 -0.8862 34 1 4.7804 -5.8188 0.7758 35 1 3.9248 -7.8985 1.7761 36 1 4.7272 -8.6759 0.3365 37 1 0.6178 -7.8965 0.3085 38 1 1.6478 -8.1792 1.7324 39 1 2.0582 -10.2483 -0.1790 40 1 1.3340 -13.8940 1.7602 41 1 1.1632 -12.4871 2.9403 42 1 -2.0371 -14.4483 1.5789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747677688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:08 Heat of formation + Delta-G solvation = -109.162261 kcal Electronic energy + Delta-G solvation = -27017.869487 eV Core-core repulsion = 22569.260661 eV Total energy + Delta-G solvation = -4448.608826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.40735 -47.39247 -40.73127 -40.00134 -37.61776 -36.94262 -34.86352 -32.44181 -30.85564 -29.14967 -28.20948 -27.75455 -25.49622 -24.74913 -22.93994 -22.16406 -21.66558 -20.62852 -19.08271 -18.44803 -17.73355 -17.55314 -17.43293 -16.98096 -16.70688 -16.22454 -15.61126 -15.40641 -15.21750 -14.81637 -14.53389 -14.31420 -14.18428 -13.99282 -13.91833 -13.76251 -13.57075 -13.00038 -12.82690 -12.70561 -12.69819 -12.53153 -12.15299 -11.96186 -11.76625 -11.69417 -11.28462 -11.08023 -11.04714 -10.94094 -10.87897 -10.77067 -10.17384 -9.82828 -9.49967 -9.20234 -9.08696 -8.70208 -8.24854 -6.51930 -6.22817 -3.93827 2.11166 2.43465 2.87492 3.01972 3.04643 3.20741 3.23459 3.29749 3.36362 3.54862 3.76317 3.86789 4.02629 4.08738 4.18686 4.29878 4.49937 4.60648 4.64414 4.69026 4.75617 4.76589 4.90472 5.08684 5.12118 5.12875 5.28328 5.34412 5.42109 5.45904 5.49670 5.60449 5.77476 5.81405 5.92855 5.99246 6.11369 6.21681 7.17257 7.58575 7.77912 7.93951 8.34131 8.48970 9.22370 10.84664 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001740 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.689215 B =16087.086861 C =16928.131771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.151 4.151 16 C 0.123 3.877 17 H 0.095 0.905 18 C 0.112 3.888 19 N -0.720 5.720 20 C 0.542 3.458 21 O -0.531 6.531 22 C -0.171 4.171 23 H 0.130 0.870 24 C -0.126 4.126 25 C -0.193 4.193 26 H 0.147 0.853 27 C 0.293 3.707 28 F -0.200 7.200 29 F -0.205 7.205 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.401 0.599 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 -30.283 1.847 31.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.351 3.649 12 O -0.381 6.381 13 N -0.387 5.387 14 C -0.022 4.022 15 C -0.189 4.189 16 C 0.019 3.981 17 H 0.113 0.887 18 C -0.012 4.012 19 N -0.372 5.372 20 C 0.328 3.672 21 O -0.407 6.407 22 C -0.192 4.192 23 H 0.148 0.852 24 C -0.163 4.163 25 C -0.212 4.212 26 H 0.165 0.835 27 C 0.239 3.761 28 F -0.181 7.181 29 F -0.186 7.186 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.088 -29.829 2.368 30.536 hybrid contribution 2.302 1.190 -0.652 2.672 sum 8.390 -28.639 1.716 29.892 Atomic orbital electron populations 1.70029 1.05954 1.27391 1.46823 1.25005 0.95039 0.99059 0.94522 0.86104 0.79547 0.81834 0.77923 1.19623 1.20549 1.20533 1.22895 0.94923 0.91562 1.58971 0.90865 1.85448 1.04767 0.96355 1.96715 1.23477 1.06561 0.94570 1.04859 1.20021 0.85370 0.84903 0.74626 1.90731 1.14719 1.84778 1.47867 1.49755 1.08136 1.05015 1.75802 1.22888 0.82321 0.96106 1.00903 1.23588 0.96537 0.97605 1.01188 1.22758 0.94383 0.81829 0.99166 0.88705 1.21648 0.99628 0.78937 1.00955 1.45723 1.36309 1.08710 1.46451 1.19440 0.80252 0.87232 0.80293 1.90764 1.41214 1.72677 1.36029 1.22243 1.05658 0.91544 0.99753 0.85177 1.23125 0.94326 1.00674 0.98185 1.23541 0.94318 0.99275 1.04084 0.83535 1.21284 0.85946 0.85528 0.83351 1.93026 1.82541 1.89956 1.52572 1.92966 1.65610 1.66356 1.93681 0.92195 0.89306 0.89280 0.89717 0.89971 0.88460 0.89204 0.89318 0.90461 0.76543 0.86411 0.87002 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.14 -2.98 5.99 36.00 0.22 -2.76 16 11 C 0.56 10.81 8.02 -10.99 -0.09 10.73 16 12 O -0.51 -11.84 15.24 5.56 0.08 -11.76 16 13 N -0.65 -8.84 3.57 -177.47 -0.63 -9.47 16 14 C 0.10 0.88 8.42 -8.51 -0.07 0.81 16 15 C -0.15 -1.02 8.02 -26.22 -0.21 -1.23 16 16 C 0.12 1.22 4.08 -72.40 -0.30 0.92 16 17 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 18 C 0.11 1.37 5.39 -4.05 -0.02 1.35 16 19 N -0.72 -6.50 5.55 -60.29 -0.33 -6.84 16 20 C 0.54 5.94 7.61 -10.98 -0.08 5.85 16 21 O -0.53 -8.31 16.25 5.55 0.09 -8.22 16 22 C -0.17 -1.26 5.84 -91.73 -0.54 -1.80 16 23 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 24 C -0.13 -0.68 9.62 -26.73 -0.26 -0.94 16 25 C -0.19 -1.31 5.67 -90.58 -0.51 -1.83 16 26 H 0.15 1.13 7.67 -51.93 -0.40 0.73 16 27 C 0.29 1.75 5.67 37.16 0.21 1.96 16 28 F -0.20 -1.79 17.29 2.25 0.04 -1.75 16 29 F -0.20 -1.40 15.91 2.25 0.04 -1.36 16 30 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 32 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.71 7.95 -51.93 -0.41 0.30 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 1.47 7.05 -51.93 -0.37 1.11 16 38 H 0.08 1.05 7.89 -51.93 -0.41 0.64 16 39 H 0.40 2.14 8.48 -40.82 -0.35 1.80 16 40 H 0.12 0.48 7.22 -51.93 -0.37 0.10 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -38.65 383.47 -8.55 -47.20 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.66 Total: -0.60 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.45 Total: 0.02 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.23 Total: -41.92 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.98 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.65 -8.55 -47.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747677688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.958 kcal (2) G-P(sol) polarization free energy of solvation -38.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds