Wall clock time and date at job start Wed Apr 1 2020 05:36:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31633 * 1
3 3 Si 1.86803 * 120.00004 * 2 1
4 4 H 1.48494 * 109.47510 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.46825 * 300.00131 * 3 2 1
6 6 H 1.48503 * 109.46949 * 59.99764 * 3 2 1
7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1
9 9 S 1.76195 * 119.99865 * 359.97438 * 7 2 1
10 10 C 1.81008 * 99.99986 * 180.02562 * 9 7 2
11 11 C 1.50693 * 109.47036 * 180.02562 * 10 9 7
12 12 O 1.21283 * 120.00164 * 359.97438 * 11 10 9
13 13 N 1.34782 * 119.99930 * 179.97438 * 11 10 9
14 14 C 1.47065 * 136.05414 * 4.93596 * 13 11 10
15 15 C 1.53494 * 87.98651 * 152.91151 * 14 13 11
16 16 C 1.47065 * 136.06177 * 184.98064 * 13 11 10
17 17 H 1.09000 * 113.46707 * 92.24562 * 16 13 11
18 18 C 1.52998 * 113.46579 * 321.87377 * 16 13 11
19 19 N 1.46496 * 109.47251 * 175.90127 * 18 16 13
20 20 C 1.34781 * 120.00506 * 175.02319 * 19 18 16
21 21 O 1.21283 * 119.99468 * 359.97438 * 20 19 18
22 22 C 1.50699 * 120.00083 * 180.02562 * 20 19 18
23 23 H 1.09000 * 115.55093 * 325.71526 * 22 20 19
24 24 C 1.53000 * 117.49825 * 111.39226 * 22 20 19
25 25 C 1.52998 * 60.03170 * 107.47190 * 24 22 20
26 26 H 1.08998 * 117.50379 * 252.51570 * 25 24 22
27 27 C 1.53004 * 117.50047 * 107.50029 * 25 24 22
28 28 F 1.39904 * 109.47285 * 231.39202 * 27 25 24
29 29 F 1.39899 * 109.46919 * 351.38827 * 27 25 24
30 30 H 0.96996 * 119.99946 * 0.02562 * 1 2 3
31 31 H 1.09005 * 109.46712 * 59.99687 * 10 9 7
32 32 H 1.09000 * 109.46997 * 300.00191 * 10 9 7
33 33 H 1.08997 * 113.46834 * 267.69197 * 14 13 11
34 34 H 1.08998 * 113.47017 * 38.13446 * 14 13 11
35 35 H 1.08997 * 114.21156 * 272.48463 * 15 14 13
36 36 H 1.09004 * 114.21123 * 139.64913 * 15 14 13
37 37 H 1.08999 * 109.47570 * 55.89818 * 18 16 13
38 38 H 1.09006 * 109.46991 * 295.89651 * 18 16 13
39 39 H 0.97007 * 120.00026 * 355.01768 * 19 18 16
40 40 H 1.09002 * 117.49264 * 214.97611 * 24 22 20
41 41 H 1.08995 * 117.49806 * 359.97114 * 24 22 20
42 42 H 1.08994 * 109.47472 * 111.38884 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.7103 1.3465 -0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8915 2.3965 1.2125
7 6 2.0104 -1.2020 -0.0005
8 1 3.0904 -1.2020 -0.0010
9 16 1.1294 -2.7279 -0.0005
10 6 2.5160 -3.8914 -0.0005
11 6 1.9875 -5.3026 -0.0012
12 8 0.7912 -5.5022 -0.0011
13 7 2.8443 -6.3431 -0.0018
14 6 4.3024 -6.5141 0.0857
15 6 4.0488 -7.9008 0.6932
16 6 2.7328 -7.8068 -0.0911
17 1 2.8056 -8.1863 -1.1103
18 6 1.5302 -8.3735 0.6662
19 7 1.4470 -9.8184 0.4396
20 6 0.5213 -10.5505 1.0904
21 8 -0.2425 -10.0131 1.8641
22 6 0.4362 -12.0370 0.8576
23 1 0.6692 -12.3685 -0.1543
24 6 0.8373 -12.9570 2.0124
25 6 -0.6362 -12.8124 1.6269
26 1 -1.2797 -12.2471 2.3010
27 6 -1.3000 -13.9941 0.9169
28 9 -1.9330 -13.5433 -0.2465
29 9 -0.3277 -14.9423 0.5812
30 1 -0.4850 0.8400 -0.0004
31 1 3.1246 -3.7312 0.8895
32 1 3.1246 -3.7313 -0.8905
33 1 4.7944 -6.5494 -0.8862
34 1 4.7804 -5.8188 0.7758
35 1 3.9248 -7.8985 1.7761
36 1 4.7272 -8.6759 0.3365
37 1 0.6178 -7.8965 0.3085
38 1 1.6478 -8.1792 1.7324
39 1 2.0582 -10.2483 -0.1790
40 1 1.3340 -13.8940 1.7602
41 1 1.1632 -12.4871 2.9403
42 1 -2.0371 -14.4483 1.5789
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001747677688.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:36:07
Heat of formation + Delta-G solvation = -137.763652 kcal
Electronic energy + Delta-G solvation = -27019.109737 eV
Core-core repulsion = 22569.260661 eV
Total energy + Delta-G solvation = -4449.849076 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 348.111 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.93467 -47.93764 -41.71228 -40.91702 -38.96541 -37.60973 -35.84412 -34.61985
-32.23186 -30.02937 -29.48015 -28.33648 -27.67980 -25.44748 -23.70570 -23.17352
-22.23462 -21.43821 -20.28524 -19.56994 -19.08497 -18.09810 -18.08289 -17.95152
-17.66804 -17.20629 -16.91639 -16.74655 -16.48492 -16.34941 -15.79261 -15.60024
-15.13488 -14.89448 -14.73125 -14.62036 -14.36601 -14.30235 -13.95426 -13.84635
-13.46837 -13.42495 -13.20640 -13.18113 -12.95210 -12.91880 -12.63572 -12.43847
-12.29411 -11.81318 -11.74938 -11.72616 -11.45804 -11.18856 -11.11042 -10.87695
-10.31987 -10.22984 -9.81022 -8.72363 -8.37714 -6.17277 1.15452 1.31495
1.39157 1.39926 1.52605 1.54089 1.75572 2.17462 2.24535 2.45786
2.85287 2.96438 3.17121 3.31855 3.33275 3.33733 3.54104 3.64400
3.68796 3.74730 3.97410 4.01686 4.05199 4.20199 4.21755 4.28898
4.41380 4.46107 4.57748 4.64823 4.66443 4.72390 4.85929 4.96471
4.97203 5.00689 5.22148 5.34325 5.38467 6.16790 6.42320 6.58905
7.03076 7.07303 7.14633 8.71972
Molecular weight = 348.11amu
Principal moments of inertia in cm(-1)
A = 0.023065 B = 0.001740 C = 0.001654
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1213.689215 B =16087.086861 C =16928.131771
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.011 3.989
3 Si 1.003 2.997
4 H -0.255 1.255
5 H -0.273 1.273
6 H -0.274 1.274
7 C -0.545 4.545
8 H 0.084 0.916
9 S -0.156 6.156
10 C -0.116 4.116
11 C 0.556 3.444
12 O -0.566 6.566
13 N -0.651 5.651
14 C 0.095 3.905
15 C -0.124 4.124
16 C 0.120 3.880
17 H 0.126 0.874
18 C 0.121 3.879
19 N -0.701 5.701
20 C 0.536 3.464
21 O -0.588 6.588
22 C -0.178 4.178
23 H 0.150 0.850
24 C -0.099 4.099
25 C -0.203 4.203
26 H 0.132 0.868
27 C 0.293 3.707
28 F -0.219 7.219
29 F -0.207 7.207
30 H 0.271 0.729
31 H 0.104 0.896
32 H 0.107 0.893
33 H 0.116 0.884
34 H 0.087 0.913
35 H 0.091 0.909
36 H 0.140 0.860
37 H 0.036 0.964
38 H 0.056 0.944
39 H 0.423 0.577
40 H 0.140 0.860
41 H 0.111 0.889
42 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.800 -32.282 1.372 34.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.193 4.193
3 Si 0.824 3.176
4 H -0.178 1.178
5 H -0.198 1.198
6 H -0.199 1.199
7 C -0.693 4.693
8 H 0.102 0.898
9 S 0.071 5.929
10 C -0.268 4.268
11 C 0.345 3.655
12 O -0.444 6.444
13 N -0.389 5.389
14 C -0.026 4.026
15 C -0.161 4.161
16 C 0.017 3.983
17 H 0.144 0.856
18 C -0.004 4.004
19 N -0.353 5.353
20 C 0.324 3.676
21 O -0.468 6.468
22 C -0.199 4.199
23 H 0.167 0.833
24 C -0.137 4.137
25 C -0.222 4.222
26 H 0.150 0.850
27 C 0.240 3.760
28 F -0.200 7.200
29 F -0.188 7.188
30 H 0.080 0.920
31 H 0.122 0.878
32 H 0.125 0.875
33 H 0.134 0.866
34 H 0.106 0.894
35 H 0.110 0.890
36 H 0.158 0.842
37 H 0.054 0.946
38 H 0.075 0.925
39 H 0.261 0.739
40 H 0.158 0.842
41 H 0.130 0.870
42 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 10.238 -31.903 1.863 33.557
hybrid contribution 1.109 1.643 -0.490 2.042
sum 11.346 -30.260 1.373 32.346
Atomic orbital electron populations
1.70202 1.08082 1.28624 1.47968 1.26195 0.96005 1.03493 0.93649
0.84855 0.78613 0.76024 0.78121 1.17829 1.19832 1.19900 1.23220
0.95328 0.91757 1.58958 0.89805 1.85667 1.10691 0.99504 1.97043
1.23257 1.03304 0.93860 1.06331 1.19719 0.85195 0.85628 0.74971
1.90711 1.17193 1.85592 1.50953 1.49824 1.10316 1.05595 1.73120
1.23368 0.79008 0.97230 1.03032 1.23543 0.94374 0.97680 1.00492
1.23198 0.94851 0.79058 1.01191 0.85645 1.21319 0.98650 0.80547
0.99895 1.45513 1.36255 1.07281 1.46297 1.20155 0.79367 0.88833
0.79251 1.90742 1.43379 1.74070 1.38627 1.22229 1.07228 0.88965
1.01475 0.83266 1.23214 0.92947 1.00487 0.97013 1.23577 0.95027
0.99514 1.04100 0.85003 1.21585 0.86391 0.85210 0.82847 1.92988
1.82924 1.90258 1.53872 1.92957 1.65863 1.66286 1.93713 0.91954
0.87750 0.87475 0.86590 0.89429 0.89029 0.84235 0.94595 0.92515
0.73907 0.84174 0.87016 0.82608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -57.20 13.22 21.65 0.29 -56.92 16
2 C 0.01 0.64 5.49 84.86 0.47 1.11 16
3 Si 1.00 44.11 29.55 68.60 2.03 46.14 16
4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16
5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
7 C -0.54 -31.74 9.50 67.95 0.65 -31.10 16
8 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16
9 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16
10 C -0.12 -4.85 5.99 71.23 0.43 -4.43 16
11 C 0.56 21.97 8.02 87.65 0.70 22.68 16
12 O -0.57 -28.27 15.24 -3.04 -0.05 -28.32 16
13 N -0.65 -16.96 3.57 -833.78 -2.97 -19.93 16
14 C 0.09 1.28 8.42 83.17 0.70 1.98 16
15 C -0.12 -1.12 8.02 30.93 0.25 -0.87 16
16 C 0.12 2.12 4.08 41.79 0.17 2.29 16
17 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16
18 C 0.12 3.04 5.39 86.38 0.47 3.51 16
19 N -0.70 -12.16 5.55 -463.06 -2.57 -14.73 16
20 C 0.54 11.90 7.61 87.66 0.67 12.57 16
21 O -0.59 -19.70 16.25 -3.04 -0.05 -19.75 16
22 C -0.18 -2.41 5.84 -11.52 -0.07 -2.47 16
23 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16
24 C -0.10 -0.86 9.62 30.59 0.29 -0.57 16
25 C -0.20 -2.59 5.67 -10.77 -0.06 -2.65 16
26 H 0.13 2.12 7.67 -2.39 -0.02 2.10 16
27 C 0.29 3.04 5.67 71.98 0.41 3.45 16
28 F -0.22 -3.76 17.29 44.97 0.78 -2.98 16
29 F -0.21 -2.33 15.91 44.97 0.72 -1.62 16
30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16
31 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16
32 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16
33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16
34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.09 1.03 7.95 -2.39 -0.02 1.01 16
36 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16
37 H 0.04 1.31 7.05 -2.39 -0.02 1.29 16
38 H 0.06 1.64 7.89 -2.38 -0.02 1.62 16
39 H 0.42 3.39 8.48 -92.70 -0.79 2.61 16
40 H 0.14 0.64 7.22 -2.39 -0.02 0.62 16
41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16
Total: -1.00 -93.47 383.47 2.35 -91.12
By element:
Atomic # 1 Polarization: 11.40 SS G_CDS: 0.28 Total: 11.67 kcal
Atomic # 6 Polarization: 0.42 SS G_CDS: 5.07 Total: 5.49 kcal
Atomic # 7 Polarization: -86.32 SS G_CDS: -5.26 Total: -91.58 kcal
Atomic # 8 Polarization: -47.97 SS G_CDS: -0.10 Total: -48.07 kcal
Atomic # 9 Polarization: -6.09 SS G_CDS: 1.49 Total: -4.60 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal
Total: -93.47 2.35 -91.12 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001747677688.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.646 kcal
(2) G-P(sol) polarization free energy of solvation -93.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds