Wall clock time and date at job start Wed Apr 1 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48494 * 109.47510 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46825 * 300.00131 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.99764 * 3 2 1 7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99986 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47036 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00164 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99930 * 179.97438 * 11 10 9 14 14 C 1.47065 * 136.05414 * 4.93596 * 13 11 10 15 15 C 1.53494 * 87.98651 * 152.91151 * 14 13 11 16 16 C 1.47065 * 136.06177 * 184.98064 * 13 11 10 17 17 H 1.09000 * 113.46707 * 92.24562 * 16 13 11 18 18 C 1.52998 * 113.46579 * 321.87377 * 16 13 11 19 19 N 1.46496 * 109.47251 * 175.90127 * 18 16 13 20 20 C 1.34781 * 120.00506 * 175.02319 * 19 18 16 21 21 O 1.21283 * 119.99468 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00083 * 180.02562 * 20 19 18 23 23 H 1.09000 * 115.55093 * 325.71526 * 22 20 19 24 24 C 1.53000 * 117.49825 * 111.39226 * 22 20 19 25 25 C 1.52998 * 60.03170 * 107.47190 * 24 22 20 26 26 H 1.08998 * 117.50379 * 252.51570 * 25 24 22 27 27 C 1.53004 * 117.50047 * 107.50029 * 25 24 22 28 28 F 1.39904 * 109.47285 * 231.39202 * 27 25 24 29 29 F 1.39899 * 109.46919 * 351.38827 * 27 25 24 30 30 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46712 * 59.99687 * 10 9 7 32 32 H 1.09000 * 109.46997 * 300.00191 * 10 9 7 33 33 H 1.08997 * 113.46834 * 267.69197 * 14 13 11 34 34 H 1.08998 * 113.47017 * 38.13446 * 14 13 11 35 35 H 1.08997 * 114.21156 * 272.48463 * 15 14 13 36 36 H 1.09004 * 114.21123 * 139.64913 * 15 14 13 37 37 H 1.08999 * 109.47570 * 55.89818 * 18 16 13 38 38 H 1.09006 * 109.46991 * 295.89651 * 18 16 13 39 39 H 0.97007 * 120.00026 * 355.01768 * 19 18 16 40 40 H 1.09002 * 117.49264 * 214.97611 * 24 22 20 41 41 H 1.08995 * 117.49806 * 359.97114 * 24 22 20 42 42 H 1.08994 * 109.47472 * 111.38884 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0018 14 6 4.3024 -6.5141 0.0857 15 6 4.0488 -7.9008 0.6932 16 6 2.7328 -7.8068 -0.0911 17 1 2.8056 -8.1863 -1.1103 18 6 1.5302 -8.3735 0.6662 19 7 1.4470 -9.8184 0.4396 20 6 0.5213 -10.5505 1.0904 21 8 -0.2425 -10.0131 1.8641 22 6 0.4362 -12.0370 0.8576 23 1 0.6692 -12.3685 -0.1543 24 6 0.8373 -12.9570 2.0124 25 6 -0.6362 -12.8124 1.6269 26 1 -1.2797 -12.2471 2.3010 27 6 -1.3000 -13.9941 0.9169 28 9 -1.9330 -13.5433 -0.2465 29 9 -0.3277 -14.9423 0.5812 30 1 -0.4850 0.8400 -0.0004 31 1 3.1246 -3.7312 0.8895 32 1 3.1246 -3.7313 -0.8905 33 1 4.7944 -6.5494 -0.8862 34 1 4.7804 -5.8188 0.7758 35 1 3.9248 -7.8985 1.7761 36 1 4.7272 -8.6759 0.3365 37 1 0.6178 -7.8965 0.3085 38 1 1.6478 -8.1792 1.7324 39 1 2.0582 -10.2483 -0.1790 40 1 1.3340 -13.8940 1.7602 41 1 1.1632 -12.4871 2.9403 42 1 -2.0371 -14.4483 1.5789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747677688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:07 Heat of formation + Delta-G solvation = -137.763652 kcal Electronic energy + Delta-G solvation = -27019.109737 eV Core-core repulsion = 22569.260661 eV Total energy + Delta-G solvation = -4449.849076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.93467 -47.93764 -41.71228 -40.91702 -38.96541 -37.60973 -35.84412 -34.61985 -32.23186 -30.02937 -29.48015 -28.33648 -27.67980 -25.44748 -23.70570 -23.17352 -22.23462 -21.43821 -20.28524 -19.56994 -19.08497 -18.09810 -18.08289 -17.95152 -17.66804 -17.20629 -16.91639 -16.74655 -16.48492 -16.34941 -15.79261 -15.60024 -15.13488 -14.89448 -14.73125 -14.62036 -14.36601 -14.30235 -13.95426 -13.84635 -13.46837 -13.42495 -13.20640 -13.18113 -12.95210 -12.91880 -12.63572 -12.43847 -12.29411 -11.81318 -11.74938 -11.72616 -11.45804 -11.18856 -11.11042 -10.87695 -10.31987 -10.22984 -9.81022 -8.72363 -8.37714 -6.17277 1.15452 1.31495 1.39157 1.39926 1.52605 1.54089 1.75572 2.17462 2.24535 2.45786 2.85287 2.96438 3.17121 3.31855 3.33275 3.33733 3.54104 3.64400 3.68796 3.74730 3.97410 4.01686 4.05199 4.20199 4.21755 4.28898 4.41380 4.46107 4.57748 4.64823 4.66443 4.72390 4.85929 4.96471 4.97203 5.00689 5.22148 5.34325 5.38467 6.16790 6.42320 6.58905 7.03076 7.07303 7.14633 8.71972 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001740 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.689215 B =16087.086861 C =16928.131771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.003 2.997 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.116 4.116 11 C 0.556 3.444 12 O -0.566 6.566 13 N -0.651 5.651 14 C 0.095 3.905 15 C -0.124 4.124 16 C 0.120 3.880 17 H 0.126 0.874 18 C 0.121 3.879 19 N -0.701 5.701 20 C 0.536 3.464 21 O -0.588 6.588 22 C -0.178 4.178 23 H 0.150 0.850 24 C -0.099 4.099 25 C -0.203 4.203 26 H 0.132 0.868 27 C 0.293 3.707 28 F -0.219 7.219 29 F -0.207 7.207 30 H 0.271 0.729 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.423 0.577 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.800 -32.282 1.372 34.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.824 3.176 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.268 4.268 11 C 0.345 3.655 12 O -0.444 6.444 13 N -0.389 5.389 14 C -0.026 4.026 15 C -0.161 4.161 16 C 0.017 3.983 17 H 0.144 0.856 18 C -0.004 4.004 19 N -0.353 5.353 20 C 0.324 3.676 21 O -0.468 6.468 22 C -0.199 4.199 23 H 0.167 0.833 24 C -0.137 4.137 25 C -0.222 4.222 26 H 0.150 0.850 27 C 0.240 3.760 28 F -0.200 7.200 29 F -0.188 7.188 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.261 0.739 40 H 0.158 0.842 41 H 0.130 0.870 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.238 -31.903 1.863 33.557 hybrid contribution 1.109 1.643 -0.490 2.042 sum 11.346 -30.260 1.373 32.346 Atomic orbital electron populations 1.70202 1.08082 1.28624 1.47968 1.26195 0.96005 1.03493 0.93649 0.84855 0.78613 0.76024 0.78121 1.17829 1.19832 1.19900 1.23220 0.95328 0.91757 1.58958 0.89805 1.85667 1.10691 0.99504 1.97043 1.23257 1.03304 0.93860 1.06331 1.19719 0.85195 0.85628 0.74971 1.90711 1.17193 1.85592 1.50953 1.49824 1.10316 1.05595 1.73120 1.23368 0.79008 0.97230 1.03032 1.23543 0.94374 0.97680 1.00492 1.23198 0.94851 0.79058 1.01191 0.85645 1.21319 0.98650 0.80547 0.99895 1.45513 1.36255 1.07281 1.46297 1.20155 0.79367 0.88833 0.79251 1.90742 1.43379 1.74070 1.38627 1.22229 1.07228 0.88965 1.01475 0.83266 1.23214 0.92947 1.00487 0.97013 1.23577 0.95027 0.99514 1.04100 0.85003 1.21585 0.86391 0.85210 0.82847 1.92988 1.82924 1.90258 1.53872 1.92957 1.65863 1.66286 1.93713 0.91954 0.87750 0.87475 0.86590 0.89429 0.89029 0.84235 0.94595 0.92515 0.73907 0.84174 0.87016 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.20 13.22 21.65 0.29 -56.92 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.74 9.50 67.95 0.65 -31.10 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 9 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 10 C -0.12 -4.85 5.99 71.23 0.43 -4.43 16 11 C 0.56 21.97 8.02 87.65 0.70 22.68 16 12 O -0.57 -28.27 15.24 -3.04 -0.05 -28.32 16 13 N -0.65 -16.96 3.57 -833.78 -2.97 -19.93 16 14 C 0.09 1.28 8.42 83.17 0.70 1.98 16 15 C -0.12 -1.12 8.02 30.93 0.25 -0.87 16 16 C 0.12 2.12 4.08 41.79 0.17 2.29 16 17 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 18 C 0.12 3.04 5.39 86.38 0.47 3.51 16 19 N -0.70 -12.16 5.55 -463.06 -2.57 -14.73 16 20 C 0.54 11.90 7.61 87.66 0.67 12.57 16 21 O -0.59 -19.70 16.25 -3.04 -0.05 -19.75 16 22 C -0.18 -2.41 5.84 -11.52 -0.07 -2.47 16 23 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.10 -0.86 9.62 30.59 0.29 -0.57 16 25 C -0.20 -2.59 5.67 -10.77 -0.06 -2.65 16 26 H 0.13 2.12 7.67 -2.39 -0.02 2.10 16 27 C 0.29 3.04 5.67 71.98 0.41 3.45 16 28 F -0.22 -3.76 17.29 44.97 0.78 -2.98 16 29 F -0.21 -2.33 15.91 44.97 0.72 -1.62 16 30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 32 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.03 7.95 -2.39 -0.02 1.01 16 36 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.04 1.31 7.05 -2.39 -0.02 1.29 16 38 H 0.06 1.64 7.89 -2.38 -0.02 1.62 16 39 H 0.42 3.39 8.48 -92.70 -0.79 2.61 16 40 H 0.14 0.64 7.22 -2.39 -0.02 0.62 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -93.47 383.47 2.35 -91.12 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.28 Total: 11.67 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.07 Total: 5.49 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -5.26 Total: -91.58 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.10 Total: -48.07 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.49 Total: -4.60 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -93.47 2.35 -91.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747677688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.646 kcal (2) G-P(sol) polarization free energy of solvation -93.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds