Wall clock time and date at job start Wed Apr 1 2020 05:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99618 * 2 1 4 4 H 1.48501 * 109.47083 * 270.00155 * 3 2 1 5 5 H 1.48496 * 109.47168 * 29.99854 * 3 2 1 6 6 H 1.48498 * 109.47193 * 149.99821 * 3 2 1 7 7 C 1.38800 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99480 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99718 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00490 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99876 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.62671 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77497 * 126.37068 * 14 13 11 16 16 C 1.53039 * 109.31588 * 54.63311 * 15 14 13 17 17 C 1.53043 * 109.53477 * 298.63371 * 16 15 14 18 18 C 1.53005 * 109.49715 * 181.34723 * 17 16 15 19 19 O 1.42900 * 109.47023 * 174.94056 * 18 17 16 20 20 N 1.46899 * 109.49883 * 301.41649 * 17 16 15 21 21 C 1.46902 * 110.99779 * 298.87387 * 20 17 16 22 22 C 1.50695 * 109.46820 * 181.12045 * 21 20 17 23 23 C 1.31165 * 119.99828 * 125.00580 * 22 21 20 24 24 Cl 1.73601 * 119.99774 * 179.97438 * 23 22 21 25 25 C 1.46921 * 120.63167 * 179.72292 * 13 11 10 26 26 H 0.97001 * 120.00484 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00245 * 10 9 7 28 28 H 1.08990 * 109.46946 * 299.99712 * 10 9 7 29 29 H 1.09004 * 109.58365 * 246.15012 * 14 13 11 30 30 H 1.08995 * 109.59046 * 6.57859 * 14 13 11 31 31 H 1.09003 * 109.49412 * 174.58085 * 15 14 13 32 32 H 1.08995 * 109.49266 * 294.64458 * 15 14 13 33 33 H 1.08997 * 109.46444 * 58.65306 * 16 15 14 34 34 H 1.08996 * 109.45995 * 178.62908 * 16 15 14 35 35 H 1.09002 * 109.46992 * 294.94153 * 18 17 16 36 36 H 1.09000 * 109.46759 * 54.94172 * 18 17 16 37 37 H 0.96696 * 113.99850 * 179.97438 * 19 18 17 38 38 H 1.00902 * 111.00078 * 174.92648 * 20 17 16 39 39 H 1.09006 * 109.47039 * 301.12252 * 21 20 17 40 40 H 1.08997 * 109.46766 * 61.11620 * 21 20 17 41 41 H 1.08000 * 120.00590 * 304.99611 * 22 21 20 42 42 H 1.08002 * 120.00093 * 359.97438 * 23 22 21 43 43 H 1.09000 * 109.58746 * 353.41688 * 25 13 11 44 44 H 1.08997 * 109.58826 * 113.84727 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2018 0.0001 10 6 4.0868 -2.9843 -0.0001 11 6 5.5733 -3.2321 -0.0002 12 8 6.3442 -2.2959 0.0003 13 7 6.0460 -4.4943 0.0001 14 6 5.1246 -5.6388 0.0000 15 6 5.4857 -6.5624 -1.1677 16 6 6.9641 -6.9458 -1.0713 17 6 7.8270 -5.6855 -1.1677 18 6 9.3058 -6.0730 -1.1051 19 8 10.1118 -4.9115 -1.3130 20 7 7.5531 -4.9997 -2.4376 21 6 7.8847 -5.8590 -3.5821 22 6 7.6172 -5.1134 -4.8641 23 6 8.5692 -4.9812 -5.7567 24 17 8.2608 -4.1229 -7.2338 25 6 7.4925 -4.7519 -0.0062 26 1 -0.4851 0.8400 -0.0004 27 1 3.6443 -3.4312 -0.8904 28 1 3.6436 -3.4315 0.8895 29 1 5.2186 -6.1836 0.9393 30 1 4.1009 -5.2837 -0.1180 31 1 4.8727 -7.4626 -1.1224 32 1 5.3039 -6.0455 -2.1099 33 1 7.1496 -7.4408 -0.1181 34 1 7.2176 -7.6225 -1.8873 35 1 9.5285 -6.4995 -0.1270 36 1 9.5217 -6.8086 -1.8799 37 1 11.0631 -5.0830 -1.2861 38 1 8.0485 -4.1222 -2.4889 39 1 8.9380 -6.1356 -3.5356 40 1 7.2709 -6.7591 -3.5503 41 1 6.6417 -4.6880 -5.0480 42 1 9.5448 -5.4064 -5.5727 43 1 8.0305 -3.8119 -0.1283 44 1 7.7838 -5.2228 0.9327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755081015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:42 Heat of formation + Delta-G solvation = -68.015632 kcal Electronic energy + Delta-G solvation = -26785.290014 eV Core-core repulsion = 22890.262120 eV Total energy + Delta-G solvation = -3895.027894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54719 -38.59894 -37.00307 -36.55812 -35.61098 -33.50602 -32.38800 -31.98283 -30.53483 -29.10411 -26.15741 -25.86743 -25.53338 -24.55734 -22.28478 -20.48194 -19.84890 -18.94451 -17.78258 -17.59458 -16.81078 -16.71435 -16.24589 -15.45405 -15.24725 -15.11555 -14.87602 -14.64397 -14.36627 -14.34141 -13.83944 -13.65499 -13.12918 -13.06003 -12.94603 -12.80909 -12.67642 -12.44338 -12.26745 -11.97001 -11.88455 -11.65035 -11.22596 -11.16482 -11.04299 -10.99383 -10.95698 -10.74251 -10.53798 -10.40657 -9.80462 -9.38028 -9.33053 -8.95168 -8.61281 -8.43010 -8.41094 -6.84579 -6.24041 -3.94585 1.57954 2.06870 2.79881 3.08699 3.27397 3.38072 3.55454 3.58872 3.68270 4.04355 4.36912 4.38750 4.47748 4.59863 4.68850 4.76644 4.80594 4.81674 4.94495 4.97259 5.08466 5.15270 5.19239 5.22762 5.24086 5.35022 5.44004 5.53469 5.59653 5.73734 5.75993 5.86749 5.91415 5.95449 6.03286 6.09003 6.21861 6.62752 6.80407 7.13090 7.23230 7.61733 7.99101 8.46460 8.59835 9.22651 10.85249 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.003067 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.496202 B = 9127.021781 C =10752.160582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.519 4.519 8 H 0.087 0.913 9 S -0.143 6.143 10 C -0.119 4.119 11 C 0.539 3.461 12 O -0.521 6.521 13 N -0.605 5.605 14 C 0.109 3.891 15 C -0.127 4.127 16 C -0.106 4.106 17 C 0.106 3.894 18 C 0.046 3.954 19 O -0.566 6.566 20 N -0.658 5.658 21 C 0.089 3.911 22 C -0.130 4.130 23 C -0.109 4.109 24 Cl -0.094 7.094 25 C 0.132 3.868 26 H 0.270 0.730 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.380 0.620 38 H 0.357 0.643 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.100 0.900 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.317 -20.300 -5.694 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.667 4.667 8 H 0.105 0.895 9 S 0.083 5.917 10 C -0.269 4.269 11 C 0.327 3.673 12 O -0.395 6.395 13 N -0.340 5.340 14 C -0.015 4.015 15 C -0.165 4.165 16 C -0.144 4.144 17 C 0.014 3.986 18 C -0.034 4.034 19 O -0.371 6.371 20 N -0.290 5.290 21 C -0.039 4.039 22 C -0.150 4.150 23 C -0.154 4.154 24 Cl -0.066 7.066 25 C 0.008 3.992 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.227 0.773 38 H 0.177 0.823 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.118 0.882 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.987 -18.593 -5.851 27.918 hybrid contribution 0.710 -0.733 -0.122 1.028 sum 20.697 -19.326 -5.973 28.941 Atomic orbital electron populations 1.69938 1.05920 1.27696 1.48333 1.24703 0.94424 0.98930 0.93226 0.86740 0.81914 0.83305 0.79935 1.19225 1.20033 1.15907 1.22324 0.88398 0.97462 1.58493 0.89463 1.84789 1.09072 1.00445 1.97382 1.23285 0.94390 1.03903 1.05370 1.20175 0.90421 0.81822 0.74923 1.90680 1.58689 1.41734 1.48444 1.47806 1.05790 1.05582 1.74840 1.21709 0.94379 0.87372 0.98020 1.21797 0.94856 0.99364 1.00501 1.21553 0.95742 0.95141 1.01986 1.21307 0.90557 0.95275 0.91489 1.22913 0.92598 0.87950 0.99942 1.86490 1.21222 1.33790 1.95620 1.60521 1.62541 1.06671 0.99274 1.20996 0.98856 0.96196 0.87896 1.23195 0.99793 0.97824 0.94157 1.24367 1.00629 1.01338 0.89092 1.98380 1.96071 1.76143 1.35998 1.21312 0.82080 1.00506 0.95297 0.92009 0.88585 0.88816 0.91846 0.89209 0.91086 0.89684 0.91316 0.91644 0.93037 0.93299 0.77262 0.82277 0.94543 0.89467 0.85269 0.84136 0.88205 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.17 27.74 -169.99 -4.72 17.45 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 7 C -0.52 -15.15 10.04 30.94 0.31 -14.83 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 16 10 C -0.12 -2.38 4.50 36.01 0.16 -2.22 16 11 C 0.54 9.98 7.72 -10.98 -0.08 9.89 16 12 O -0.52 -11.56 15.28 5.56 0.08 -11.48 16 13 N -0.61 -8.22 2.90 -173.05 -0.50 -8.72 16 14 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 15 C -0.13 -1.06 5.93 -26.61 -0.16 -1.22 16 16 C -0.11 -0.74 4.32 -26.69 -0.12 -0.86 16 17 C 0.11 0.92 0.39 -131.71 -0.05 0.87 16 18 C 0.05 0.31 5.36 37.16 0.20 0.51 16 19 O -0.57 -4.37 12.65 -35.23 -0.45 -4.82 16 20 N -0.66 -6.62 5.11 -101.33 -0.52 -7.14 16 21 C 0.09 0.70 5.34 -4.98 -0.03 0.67 16 22 C -0.13 -1.15 9.49 -36.07 -0.34 -1.50 16 23 C -0.11 -0.91 10.43 28.97 0.30 -0.61 16 24 Cl -0.09 -0.93 29.10 -51.86 -1.51 -2.44 16 25 C 0.13 1.54 5.07 -3.95 -0.02 1.52 16 26 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.10 1.82 7.69 -51.92 -0.40 1.42 16 28 H 0.09 1.75 7.94 -51.92 -0.41 1.34 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.88 7.53 -51.93 -0.39 0.48 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 6.53 -51.93 -0.34 0.05 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.27 6.65 -51.93 -0.35 -0.08 16 37 H 0.38 1.35 9.12 45.56 0.42 1.76 16 38 H 0.36 4.39 8.11 -39.29 -0.32 4.07 16 39 H 0.04 0.25 5.99 -51.93 -0.31 -0.06 16 40 H 0.09 0.62 6.42 -51.93 -0.33 0.28 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.14 0.91 7.84 -52.49 -0.41 0.50 16 43 H 0.10 1.47 6.84 -51.93 -0.36 1.11 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -34.82 378.40 -8.69 -43.51 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.62 Total: 3.71 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.06 Total: -3.94 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.24 Total: -41.99 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.36 Total: -16.30 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.45 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.51 Total: -2.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.82 -8.69 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755081015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.509 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds