Wall clock time and date at job start Wed Apr 1 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99618 * 2 1 4 4 H 1.48501 * 109.47083 * 270.00155 * 3 2 1 5 5 H 1.48496 * 109.47168 * 29.99854 * 3 2 1 6 6 H 1.48498 * 109.47193 * 149.99821 * 3 2 1 7 7 C 1.38800 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99480 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99718 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00490 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99876 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.62671 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77497 * 126.37068 * 14 13 11 16 16 C 1.53039 * 109.31588 * 54.63311 * 15 14 13 17 17 C 1.53043 * 109.53477 * 298.63371 * 16 15 14 18 18 C 1.53005 * 109.49715 * 181.34723 * 17 16 15 19 19 O 1.42900 * 109.47023 * 174.94056 * 18 17 16 20 20 N 1.46899 * 109.49883 * 301.41649 * 17 16 15 21 21 C 1.46902 * 110.99779 * 298.87387 * 20 17 16 22 22 C 1.50695 * 109.46820 * 181.12045 * 21 20 17 23 23 C 1.31165 * 119.99828 * 125.00580 * 22 21 20 24 24 Cl 1.73601 * 119.99774 * 179.97438 * 23 22 21 25 25 C 1.46921 * 120.63167 * 179.72292 * 13 11 10 26 26 H 0.97001 * 120.00484 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00245 * 10 9 7 28 28 H 1.08990 * 109.46946 * 299.99712 * 10 9 7 29 29 H 1.09004 * 109.58365 * 246.15012 * 14 13 11 30 30 H 1.08995 * 109.59046 * 6.57859 * 14 13 11 31 31 H 1.09003 * 109.49412 * 174.58085 * 15 14 13 32 32 H 1.08995 * 109.49266 * 294.64458 * 15 14 13 33 33 H 1.08997 * 109.46444 * 58.65306 * 16 15 14 34 34 H 1.08996 * 109.45995 * 178.62908 * 16 15 14 35 35 H 1.09002 * 109.46992 * 294.94153 * 18 17 16 36 36 H 1.09000 * 109.46759 * 54.94172 * 18 17 16 37 37 H 0.96696 * 113.99850 * 179.97438 * 19 18 17 38 38 H 1.00902 * 111.00078 * 174.92648 * 20 17 16 39 39 H 1.09006 * 109.47039 * 301.12252 * 21 20 17 40 40 H 1.08997 * 109.46766 * 61.11620 * 21 20 17 41 41 H 1.08000 * 120.00590 * 304.99611 * 22 21 20 42 42 H 1.08002 * 120.00093 * 359.97438 * 23 22 21 43 43 H 1.09000 * 109.58746 * 353.41688 * 25 13 11 44 44 H 1.08997 * 109.58826 * 113.84727 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2018 0.0001 10 6 4.0868 -2.9843 -0.0001 11 6 5.5733 -3.2321 -0.0002 12 8 6.3442 -2.2959 0.0003 13 7 6.0460 -4.4943 0.0001 14 6 5.1246 -5.6388 0.0000 15 6 5.4857 -6.5624 -1.1677 16 6 6.9641 -6.9458 -1.0713 17 6 7.8270 -5.6855 -1.1677 18 6 9.3058 -6.0730 -1.1051 19 8 10.1118 -4.9115 -1.3130 20 7 7.5531 -4.9997 -2.4376 21 6 7.8847 -5.8590 -3.5821 22 6 7.6172 -5.1134 -4.8641 23 6 8.5692 -4.9812 -5.7567 24 17 8.2608 -4.1229 -7.2338 25 6 7.4925 -4.7519 -0.0062 26 1 -0.4851 0.8400 -0.0004 27 1 3.6443 -3.4312 -0.8904 28 1 3.6436 -3.4315 0.8895 29 1 5.2186 -6.1836 0.9393 30 1 4.1009 -5.2837 -0.1180 31 1 4.8727 -7.4626 -1.1224 32 1 5.3039 -6.0455 -2.1099 33 1 7.1496 -7.4408 -0.1181 34 1 7.2176 -7.6225 -1.8873 35 1 9.5285 -6.4995 -0.1270 36 1 9.5217 -6.8086 -1.8799 37 1 11.0631 -5.0830 -1.2861 38 1 8.0485 -4.1222 -2.4889 39 1 8.9380 -6.1356 -3.5356 40 1 7.2709 -6.7591 -3.5503 41 1 6.6417 -4.6880 -5.0480 42 1 9.5448 -5.4064 -5.5727 43 1 8.0305 -3.8119 -0.1283 44 1 7.7838 -5.2228 0.9327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755081015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:41 Heat of formation + Delta-G solvation = -94.603524 kcal Electronic energy + Delta-G solvation = -26786.442952 eV Core-core repulsion = 22890.262120 eV Total energy + Delta-G solvation = -3896.180832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48345 -39.70157 -37.73444 -37.32631 -36.38581 -34.66961 -34.35274 -32.79816 -31.61649 -30.24068 -27.87462 -26.80714 -26.62891 -25.41788 -23.06235 -21.25475 -20.87083 -19.96346 -19.43816 -18.33037 -18.08939 -17.53149 -17.18951 -17.01430 -16.58513 -16.21839 -15.94170 -15.66239 -15.41650 -15.02484 -14.95153 -14.85062 -14.77887 -14.31149 -13.86647 -13.71730 -13.55428 -13.40057 -13.31654 -13.11080 -13.02447 -12.92426 -12.72775 -12.47965 -12.39434 -11.88916 -11.83123 -11.79557 -11.72535 -11.45052 -11.16857 -10.93034 -10.81167 -10.49312 -10.07760 -9.54171 -9.26856 -8.98261 -8.51181 -6.21306 0.90207 0.99551 1.31164 1.38247 1.46862 1.55265 1.64223 2.15734 2.25691 2.71082 2.87095 3.05489 3.44086 3.58853 3.81904 3.84930 3.97651 4.07897 4.15016 4.19300 4.24957 4.29231 4.43103 4.44805 4.52014 4.55529 4.65311 4.67435 4.72572 4.78486 4.89881 4.99996 5.12148 5.18347 5.26586 5.32802 5.51964 5.63203 5.71442 6.11528 6.15615 6.34616 6.38322 6.88065 6.94354 7.20830 8.61325 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.003067 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.496202 B = 9127.021781 C =10752.160582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.062 0.938 9 S -0.178 6.178 10 C -0.102 4.102 11 C 0.537 3.463 12 O -0.567 6.567 13 N -0.590 5.590 14 C 0.098 3.902 15 C -0.121 4.121 16 C -0.102 4.102 17 C 0.108 3.892 18 C 0.050 3.950 19 O -0.590 6.590 20 N -0.676 5.676 21 C 0.098 3.902 22 C -0.139 4.139 23 C -0.104 4.104 24 Cl -0.112 7.112 25 C 0.129 3.871 26 H 0.277 0.723 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.340 0.660 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.166 0.834 43 H 0.065 0.935 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.229 -22.880 -5.423 32.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.080 0.920 9 S 0.049 5.951 10 C -0.253 4.253 11 C 0.324 3.676 12 O -0.446 6.446 13 N -0.322 5.322 14 C -0.024 4.024 15 C -0.160 4.160 16 C -0.140 4.140 17 C 0.016 3.984 18 C -0.030 4.030 19 O -0.399 6.399 20 N -0.307 5.307 21 C -0.030 4.030 22 C -0.158 4.158 23 C -0.148 4.148 24 Cl -0.084 7.084 25 C 0.006 3.994 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.183 0.817 43 H 0.083 0.917 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.904 -21.252 -5.579 31.025 hybrid contribution 0.136 -0.110 -0.197 0.263 sum 22.040 -21.361 -5.776 31.232 Atomic orbital electron populations 1.70009 1.07230 1.28987 1.49275 1.25526 0.95247 1.02123 0.92909 0.85890 0.80701 0.79760 0.80161 1.18851 1.18144 1.16204 1.22449 0.90202 0.96665 1.58113 0.91998 1.84722 1.06451 1.06431 1.97523 1.23238 0.96373 0.99158 1.06492 1.19879 0.89179 0.83184 0.75359 1.90661 1.59194 1.43542 1.51248 1.47803 1.07465 1.04633 1.72345 1.22046 0.93121 0.86673 1.00546 1.21752 0.96621 0.99422 0.98159 1.21584 0.93937 0.94422 1.04014 1.21344 0.92719 0.94955 0.89416 1.22887 0.90766 0.87807 1.01517 1.86466 1.22820 1.34830 1.95749 1.60543 1.62859 1.06594 1.00672 1.20986 1.00012 0.95748 0.86267 1.23185 0.99073 0.98423 0.95144 1.24640 1.01454 1.00708 0.88039 1.98379 1.96213 1.76633 1.37191 1.21492 0.80004 0.99932 0.97958 0.91364 0.87713 0.87382 0.89107 0.90324 0.88586 0.91869 0.89197 0.89603 0.91524 0.91294 0.75318 0.84201 0.92861 0.88250 0.87397 0.81713 0.91666 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.71 13.97 21.65 0.30 -56.41 16 2 C 0.05 2.84 5.50 84.86 0.47 3.30 16 3 Si 0.91 46.22 27.74 68.60 1.90 48.12 16 4 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.24 -12.10 6.74 99.48 0.67 -11.43 16 7 C -0.53 -31.44 10.04 67.95 0.68 -30.76 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.38 18.55 -56.49 -1.05 -10.43 16 10 C -0.10 -4.10 4.50 71.24 0.32 -3.78 16 11 C 0.54 20.00 7.72 87.66 0.68 20.67 16 12 O -0.57 -25.88 15.28 -3.03 -0.05 -25.92 16 13 N -0.59 -15.35 2.90 -819.79 -2.38 -17.73 16 14 C 0.10 1.81 6.34 86.36 0.55 2.36 16 15 C -0.12 -1.66 5.93 30.67 0.18 -1.47 16 16 C -0.10 -0.99 4.32 30.62 0.13 -0.86 16 17 C 0.11 1.58 0.39 3.45 0.00 1.58 16 18 C 0.05 0.49 5.36 71.98 0.39 0.88 16 19 O -0.59 -7.94 12.65 -148.98 -1.88 -9.82 16 20 N -0.68 -12.72 5.11 -474.51 -2.42 -15.15 16 21 C 0.10 1.30 5.34 85.56 0.46 1.76 16 22 C -0.14 -2.34 9.49 25.48 0.24 -2.09 16 23 C -0.10 -1.60 10.43 67.62 0.71 -0.89 16 24 Cl -0.11 -2.19 29.10 -2.72 -0.08 -2.27 16 25 C 0.13 2.82 5.07 86.21 0.44 3.26 16 26 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.10 4.01 7.69 -2.40 -0.02 3.99 16 28 H 0.11 4.02 7.94 -2.40 -0.02 4.00 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 1.64 5.93 -2.39 -0.01 1.63 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.18 7.53 -2.39 -0.02 1.16 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.56 6.53 -2.39 -0.02 0.55 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.43 6.65 -2.39 -0.02 0.41 16 37 H 0.40 1.93 9.12 -74.06 -0.68 1.25 16 38 H 0.34 8.35 8.11 -89.69 -0.73 7.62 16 39 H 0.05 0.54 5.99 -2.38 -0.01 0.53 16 40 H 0.10 1.08 6.42 -2.39 -0.02 1.06 16 41 H 0.11 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.17 1.71 7.84 -2.91 -0.02 1.69 16 43 H 0.06 1.94 6.84 -2.39 -0.02 1.92 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -78.48 378.40 -0.82 -79.30 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.40 Total: 16.36 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 5.24 Total: -6.05 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -4.50 Total: -89.29 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.93 Total: -35.75 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.05 Total: -10.43 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -78.48 -0.82 -79.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755081015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.299 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds