Wall clock time and date at job start Wed Apr 1 2020 05:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48492 * 109.47136 * 270.00293 * 3 2 1 5 5 H 1.48506 * 109.46957 * 30.00220 * 3 2 1 6 6 H 1.48498 * 109.47077 * 149.99784 * 3 2 1 7 7 C 1.38800 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00133 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00079 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47226 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99891 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00024 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00326 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47424 * 180.02562 * 14 13 11 16 16 N 1.46505 * 109.47120 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00023 * 179.97438 * 16 15 14 18 18 O 1.21604 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.47515 * 120.00203 * 180.02562 * 17 16 15 20 20 C 1.46510 * 120.16671 * 0.02756 * 19 17 16 21 21 C 1.35526 * 119.04967 * 179.97438 * 20 19 17 22 22 C 1.41240 * 119.42431 * 359.96729 * 21 20 19 23 23 C 1.37912 * 132.97028 * 180.02562 * 22 21 20 24 24 N 1.33440 * 107.65701 * 179.74728 * 23 22 21 25 25 C 1.30743 * 109.94105 * 0.43675 * 24 23 22 26 26 N 1.35925 * 109.20482 * 359.55878 * 25 24 23 27 27 C 1.36324 * 120.17074 * 180.02562 * 19 17 16 28 28 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46943 * 59.99779 * 10 9 7 30 30 H 1.09005 * 109.47034 * 299.99674 * 10 9 7 31 31 H 0.97006 * 119.99828 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.46954 * 59.99897 * 14 13 11 33 33 H 1.09007 * 109.47449 * 300.00225 * 14 13 11 34 34 H 1.08999 * 109.46900 * 60.00174 * 15 14 13 35 35 H 1.08997 * 109.47335 * 300.00277 * 15 14 13 36 36 H 0.96994 * 119.99774 * 0.02562 * 16 15 14 37 37 H 1.07999 * 120.46984 * 359.97438 * 20 19 17 38 38 H 1.07997 * 120.28901 * 180.02562 * 21 20 19 39 39 H 1.08007 * 126.16774 * 0.02577 * 23 22 21 40 40 H 1.08002 * 125.40208 * 179.83155 * 25 24 23 41 41 H 1.08005 * 119.74353 * 0.02598 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0019 15 6 3.5025 -8.6985 0.0018 16 7 2.9887 -10.0705 0.0024 17 6 3.8455 -11.1109 0.0019 18 8 5.0449 -10.9108 0.0014 19 6 3.3282 -12.4924 0.0019 20 6 1.8838 -12.7377 0.0018 21 6 1.4334 -14.0160 0.0013 22 6 2.3631 -15.0792 0.0001 23 6 2.2222 -16.4511 -0.0011 24 7 3.4457 -16.9837 -0.0075 25 6 4.3451 -16.0347 -0.0010 26 7 3.7210 -14.8272 0.0002 27 6 4.1917 -13.5473 0.0019 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1244 -3.7314 -0.8895 31 1 3.8009 -6.1835 0.0004 32 1 1.7209 -7.8755 -0.8874 33 1 1.7227 -7.8748 0.8927 34 1 4.1116 -8.5379 0.8913 35 1 4.1106 -8.5390 -0.8886 36 1 2.0320 -10.2301 0.0024 37 1 1.1880 -11.9117 0.0022 38 1 0.3728 -14.2198 0.0008 39 1 1.2897 -16.9961 -0.0018 40 1 5.4144 -16.1862 -0.0014 41 1 5.2567 -13.3679 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757918819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:53 Heat of formation + Delta-G solvation = 18.513206 kcal Electronic energy + Delta-G solvation = -25233.332912 eV Core-core repulsion = 21240.949696 eV Total energy + Delta-G solvation = -3992.383216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.29473 -40.42021 -39.27462 -37.46193 -36.17242 -34.34805 -33.82711 -32.46606 -31.76118 -30.28700 -28.72978 -28.18497 -25.55280 -25.01468 -23.56316 -22.92928 -22.35149 -21.40604 -20.43742 -18.87291 -18.11196 -17.69272 -17.17265 -16.71603 -16.54018 -16.24114 -16.20492 -15.73310 -15.27371 -15.21516 -15.18832 -14.83540 -14.41814 -14.23356 -14.08470 -13.91741 -13.60416 -13.25081 -12.61859 -12.61138 -12.34182 -12.32265 -12.11688 -11.75415 -11.38555 -11.09371 -11.06143 -10.88868 -10.80446 -10.68683 -9.94724 -9.86134 -9.64038 -9.56312 -9.12660 -9.06404 -8.29411 -8.17505 -6.54974 -6.25494 -3.96603 -0.00602 0.40373 1.80814 2.07609 2.44208 2.56376 2.94807 2.96906 3.05630 3.20076 3.26249 3.30813 3.66508 3.75546 3.92597 4.02592 4.15097 4.16780 4.19054 4.30965 4.34675 4.69725 4.81159 4.90565 5.03984 5.09271 5.10053 5.14500 5.23002 5.47484 5.50275 5.51236 5.63475 5.79093 5.82413 5.83864 5.96493 6.07809 6.40665 6.47937 6.83580 7.26097 7.52328 7.55763 7.56556 8.31505 8.46544 9.20095 10.81936 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.001331 C = 0.001294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.359820 B =21024.779915 C =21626.387525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.737 5.737 14 C 0.110 3.890 15 C 0.109 3.891 16 N -0.716 5.716 17 C 0.574 3.426 18 O -0.535 6.535 19 C -0.157 4.157 20 C -0.107 4.107 21 C -0.071 4.071 22 C 0.001 3.999 23 C -0.013 4.013 24 N -0.452 5.452 25 C 0.157 3.843 26 N -0.380 5.380 27 C 0.135 3.865 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.402 0.598 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.405 0.595 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.184 0.816 40 H 0.217 0.783 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -30.610 0.012 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.393 5.393 14 C -0.015 4.015 15 C -0.015 4.015 16 N -0.368 5.368 17 C 0.361 3.639 18 O -0.413 6.413 19 C -0.164 4.164 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.106 4.106 23 C -0.166 4.166 24 N -0.165 5.165 25 C -0.118 4.118 26 N -0.053 5.053 27 C 0.011 3.989 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.241 0.759 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.201 0.799 40 H 0.233 0.767 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.540 -31.562 0.009 32.232 hybrid contribution 1.816 2.144 -0.006 2.810 sum 8.356 -29.418 0.002 30.582 Atomic orbital electron populations 1.70013 1.05968 1.27511 1.46785 1.24988 0.95022 0.99040 0.94455 0.86164 0.79422 0.81525 0.78378 1.20248 1.20726 1.19676 1.22865 0.94931 0.91594 1.59096 0.90869 1.85392 1.04808 0.96386 1.96746 1.23534 1.06718 0.95047 1.05135 1.20334 0.86420 0.86224 0.74932 1.90708 1.15339 1.85538 1.47308 1.45797 1.10295 1.04774 1.78410 1.21314 0.95441 0.81459 1.03273 1.21528 0.96525 0.79735 1.03721 1.45597 1.10379 1.05654 1.75205 1.17588 0.85949 0.83898 0.76490 1.90843 1.14812 1.85713 1.49903 1.20326 0.93699 0.92918 1.09441 1.22063 0.92816 0.97487 1.00399 1.20456 0.99312 0.89940 0.99341 1.19797 0.83109 0.96699 1.11016 1.22662 0.96520 0.88708 1.08700 1.69993 0.99910 1.31115 1.15453 1.25316 1.00239 0.76680 1.09586 1.43025 1.08268 1.06474 1.47484 1.21724 1.00786 0.80599 0.95743 0.92146 0.89034 0.89032 0.76427 0.90823 0.90832 0.90219 0.90229 0.75887 0.83867 0.82831 0.79898 0.76675 0.80139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 11 C 0.53 9.21 7.85 -10.99 -0.09 9.12 16 12 O -0.52 -10.94 15.86 5.56 0.09 -10.85 16 13 N -0.74 -8.49 5.56 -60.30 -0.33 -8.83 16 14 C 0.11 1.00 5.79 -4.05 -0.02 0.98 16 15 C 0.11 0.78 5.79 -4.04 -0.02 0.76 16 16 N -0.72 -4.56 5.51 -61.35 -0.34 -4.89 16 17 C 0.57 4.67 7.77 -12.48 -0.10 4.57 16 18 O -0.53 -6.07 16.28 5.27 0.09 -5.98 16 19 C -0.16 -1.03 5.98 -103.47 -0.62 -1.65 16 20 C -0.11 -0.51 9.73 -37.22 -0.36 -0.87 16 21 C -0.07 -0.35 10.09 -39.41 -0.40 -0.75 16 22 C 0.00 0.01 6.78 -84.02 -0.57 -0.56 16 23 C -0.01 -0.10 12.00 -16.97 -0.20 -0.30 16 24 N -0.45 -3.96 11.18 -13.78 -0.15 -4.11 16 25 C 0.16 1.05 12.76 -89.36 -1.14 -0.09 16 26 N -0.38 -2.66 2.94 -61.93 -0.18 -2.84 16 27 C 0.13 0.87 10.51 -16.22 -0.17 0.70 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 30 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 31 H 0.40 3.49 8.47 -40.82 -0.35 3.15 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.41 1.64 6.57 -40.82 -0.27 1.37 16 37 H 0.14 0.32 6.58 -52.49 -0.35 -0.03 16 38 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.18 0.92 7.56 -52.48 -0.40 0.52 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -38.49 376.51 -9.64 -48.13 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.71 Total: -0.02 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.27 Total: -3.51 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.28 Total: -45.69 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.17 Total: -16.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.49 -9.64 -48.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.643 kcal (2) G-P(sol) polarization free energy of solvation -38.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds