Wall clock time and date at job start Wed Apr 1 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48492 * 109.47136 * 270.00293 * 3 2 1 5 5 H 1.48506 * 109.46957 * 30.00220 * 3 2 1 6 6 H 1.48498 * 109.47077 * 149.99784 * 3 2 1 7 7 C 1.38800 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00133 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00079 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47226 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99891 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00024 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00326 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47424 * 180.02562 * 14 13 11 16 16 N 1.46505 * 109.47120 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00023 * 179.97438 * 16 15 14 18 18 O 1.21604 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.47515 * 120.00203 * 180.02562 * 17 16 15 20 20 C 1.46510 * 120.16671 * 0.02756 * 19 17 16 21 21 C 1.35526 * 119.04967 * 179.97438 * 20 19 17 22 22 C 1.41240 * 119.42431 * 359.96729 * 21 20 19 23 23 C 1.37912 * 132.97028 * 180.02562 * 22 21 20 24 24 N 1.33440 * 107.65701 * 179.74728 * 23 22 21 25 25 C 1.30743 * 109.94105 * 0.43675 * 24 23 22 26 26 N 1.35925 * 109.20482 * 359.55878 * 25 24 23 27 27 C 1.36324 * 120.17074 * 180.02562 * 19 17 16 28 28 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46943 * 59.99779 * 10 9 7 30 30 H 1.09005 * 109.47034 * 299.99674 * 10 9 7 31 31 H 0.97006 * 119.99828 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.46954 * 59.99897 * 14 13 11 33 33 H 1.09007 * 109.47449 * 300.00225 * 14 13 11 34 34 H 1.08999 * 109.46900 * 60.00174 * 15 14 13 35 35 H 1.08997 * 109.47335 * 300.00277 * 15 14 13 36 36 H 0.96994 * 119.99774 * 0.02562 * 16 15 14 37 37 H 1.07999 * 120.46984 * 359.97438 * 20 19 17 38 38 H 1.07997 * 120.28901 * 180.02562 * 21 20 19 39 39 H 1.08007 * 126.16774 * 0.02577 * 23 22 21 40 40 H 1.08002 * 125.40208 * 179.83155 * 25 24 23 41 41 H 1.08005 * 119.74353 * 0.02598 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0019 15 6 3.5025 -8.6985 0.0018 16 7 2.9887 -10.0705 0.0024 17 6 3.8455 -11.1109 0.0019 18 8 5.0449 -10.9108 0.0014 19 6 3.3282 -12.4924 0.0019 20 6 1.8838 -12.7377 0.0018 21 6 1.4334 -14.0160 0.0013 22 6 2.3631 -15.0792 0.0001 23 6 2.2222 -16.4511 -0.0011 24 7 3.4457 -16.9837 -0.0075 25 6 4.3451 -16.0347 -0.0010 26 7 3.7210 -14.8272 0.0002 27 6 4.1917 -13.5473 0.0019 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1244 -3.7314 -0.8895 31 1 3.8009 -6.1835 0.0004 32 1 1.7209 -7.8755 -0.8874 33 1 1.7227 -7.8748 0.8927 34 1 4.1116 -8.5379 0.8913 35 1 4.1106 -8.5390 -0.8886 36 1 2.0320 -10.2301 0.0024 37 1 1.1880 -11.9117 0.0022 38 1 0.3728 -14.2198 0.0008 39 1 1.2897 -16.9961 -0.0018 40 1 5.4144 -16.1862 -0.0014 41 1 5.2567 -13.3679 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757918819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:52 Heat of formation + Delta-G solvation = -8.721058 kcal Electronic energy + Delta-G solvation = -25234.513879 eV Core-core repulsion = 21240.949696 eV Total energy + Delta-G solvation = -3993.564182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.76624 -41.08819 -40.53401 -37.96372 -37.01379 -35.20735 -34.57363 -34.38088 -32.36816 -31.44363 -29.26184 -29.14087 -27.64064 -25.64654 -23.99625 -23.62347 -22.84337 -22.16917 -21.53578 -19.87984 -19.34859 -18.46216 -17.87899 -17.54158 -17.23790 -17.16364 -16.89119 -16.87015 -16.79203 -16.24905 -15.90154 -15.63285 -15.56814 -15.18173 -15.00118 -14.68426 -14.50192 -14.38630 -14.04104 -13.70355 -13.15415 -13.01135 -12.92375 -12.88790 -12.77377 -12.65780 -12.58857 -11.80348 -11.72640 -11.45171 -11.35394 -11.13353 -10.99719 -10.51271 -10.26558 -10.24463 -10.12758 -8.64987 -8.61902 -8.33945 -6.11435 -0.49216 -0.01207 1.22396 1.34431 1.43215 1.48154 1.53554 1.57490 1.60383 1.90277 2.04906 2.28195 2.46529 2.52679 3.00609 3.32510 3.35299 3.44854 3.61405 3.64953 3.72782 3.82776 3.90221 4.02032 4.02116 4.33027 4.36070 4.44090 4.50404 4.54525 4.75191 4.82295 4.83911 4.89032 5.10261 5.16825 5.37995 5.42596 5.43328 5.53251 6.02461 6.20823 6.30680 6.46108 6.77015 6.98295 7.07977 7.21386 8.75142 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.001331 C = 0.001294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.359820 B =21024.779915 C =21626.387525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.712 5.712 14 C 0.113 3.887 15 C 0.120 3.880 16 N -0.705 5.705 17 C 0.576 3.424 18 O -0.571 6.571 19 C -0.164 4.164 20 C -0.106 4.106 21 C -0.074 4.074 22 C -0.013 4.013 23 C -0.030 4.030 24 N -0.486 5.486 25 C 0.152 3.848 26 N -0.385 5.385 27 C 0.129 3.871 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.419 0.581 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.181 0.819 39 H 0.201 0.799 40 H 0.245 0.755 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 -30.762 0.014 32.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.011 4.011 15 C -0.005 4.005 16 N -0.358 5.358 17 C 0.364 3.636 18 O -0.452 6.452 19 C -0.170 4.170 20 C -0.127 4.127 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.182 4.182 24 N -0.199 5.199 25 C -0.123 4.123 26 N -0.058 5.058 27 C 0.006 3.994 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.256 0.744 37 H 0.188 0.812 38 H 0.199 0.801 39 H 0.218 0.782 40 H 0.261 0.739 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.952 -31.753 0.010 32.734 hybrid contribution 1.437 2.045 -0.008 2.500 sum 9.389 -29.708 0.002 31.156 Atomic orbital electron populations 1.70174 1.07934 1.28585 1.48033 1.26085 0.95920 1.03214 0.93744 0.84983 0.78234 0.76193 0.78763 1.19368 1.20369 1.18243 1.23217 0.95382 0.92096 1.58832 0.89903 1.85537 1.10498 0.99172 1.97062 1.23385 1.03616 0.94310 1.06991 1.19976 0.86136 0.86526 0.75013 1.90700 1.17270 1.86012 1.49947 1.45492 1.10601 1.04672 1.75921 1.21400 0.96164 0.80080 1.03452 1.21361 0.95522 0.79593 1.03994 1.45483 1.11000 1.05007 1.74329 1.17756 0.85504 0.84571 0.75796 1.90827 1.16324 1.86241 1.51771 1.20333 0.94766 0.92046 1.09875 1.22345 0.92229 0.98369 0.99708 1.20809 1.00352 0.89362 0.98747 1.20195 0.83607 0.97207 1.10994 1.23060 0.96908 0.89254 1.08955 1.69980 1.00871 1.32290 1.16793 1.25926 1.01311 0.76386 1.08681 1.43133 1.08475 1.06646 1.47515 1.21897 1.01362 0.80505 0.95633 0.92008 0.87086 0.87060 0.74394 0.90691 0.90700 0.89993 0.90005 0.74396 0.81210 0.80139 0.78187 0.73940 0.79380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.22 21.65 0.29 -54.70 16 2 C 0.02 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 42.77 29.55 68.60 2.03 44.80 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.55 -30.53 9.50 67.95 0.65 -29.89 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 10 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 11 C 0.54 17.81 7.85 87.66 0.69 18.50 16 12 O -0.56 -23.77 15.86 -3.01 -0.05 -23.82 16 13 N -0.71 -14.64 5.56 -463.07 -2.57 -17.21 16 14 C 0.11 1.79 5.79 86.38 0.50 2.29 16 15 C 0.12 1.42 5.79 86.38 0.50 1.92 16 16 N -0.71 -7.32 5.51 -466.27 -2.57 -9.89 16 17 C 0.58 8.43 7.77 86.69 0.67 9.10 16 18 O -0.57 -12.34 16.28 -4.04 -0.07 -12.40 16 19 C -0.16 -1.91 5.98 -19.12 -0.11 -2.02 16 20 C -0.11 -0.77 9.73 23.80 0.23 -0.54 16 21 C -0.07 -0.58 10.09 22.38 0.23 -0.35 16 22 C -0.01 -0.17 6.78 38.81 0.26 0.10 16 23 C -0.03 -0.43 12.00 84.37 1.01 0.58 16 24 N -0.49 -8.46 11.18 -197.51 -2.21 -10.67 16 25 C 0.15 1.97 12.76 179.91 2.30 4.27 16 26 N -0.39 -5.11 2.94 -349.85 -1.03 -6.14 16 27 C 0.13 1.55 10.51 83.54 0.88 2.43 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 30 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 31 H 0.42 5.93 8.47 -92.70 -0.79 5.14 16 32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.42 2.21 6.57 -92.71 -0.61 1.61 16 37 H 0.17 0.20 6.58 -2.91 -0.02 0.18 16 38 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.24 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.19 1.81 7.56 -2.91 -0.02 1.79 16 Total: -1.00 -85.75 376.51 1.06 -84.68 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.30 Total: 11.28 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 8.70 Total: 3.28 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -8.10 Total: -98.61 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.11 Total: -36.22 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -85.75 1.06 -84.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.961 kcal (2) G-P(sol) polarization free energy of solvation -85.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds