Wall clock time and date at job start Wed Apr 1 2020 05:12:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86804 * 120.00122 * 2 1
4 4 H 1.48492 * 109.47136 * 270.00293 * 3 2 1
5 5 H 1.48506 * 109.46957 * 30.00220 * 3 2 1
6 6 H 1.48498 * 109.47077 * 149.99784 * 3 2 1
7 7 C 1.38800 * 120.00237 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00133 * 179.97438 * 7 2 1
9 9 S 1.76198 * 119.99711 * 0.02562 * 7 2 1
10 10 C 1.81001 * 100.00079 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.47226 * 179.97438 * 10 9 7
12 12 O 1.21275 * 119.99891 * 359.97438 * 11 10 9
13 13 N 1.34774 * 120.00024 * 179.97438 * 11 10 9
14 14 C 1.46493 * 120.00326 * 179.97438 * 13 11 10
15 15 C 1.53000 * 109.47424 * 180.02562 * 14 13 11
16 16 N 1.46505 * 109.47120 * 180.02562 * 15 14 13
17 17 C 1.34774 * 120.00023 * 179.97438 * 16 15 14
18 18 O 1.21604 * 119.99754 * 0.02562 * 17 16 15
19 19 C 1.47515 * 120.00203 * 180.02562 * 17 16 15
20 20 C 1.46510 * 120.16671 * 0.02756 * 19 17 16
21 21 C 1.35526 * 119.04967 * 179.97438 * 20 19 17
22 22 C 1.41240 * 119.42431 * 359.96729 * 21 20 19
23 23 C 1.37912 * 132.97028 * 180.02562 * 22 21 20
24 24 N 1.33440 * 107.65701 * 179.74728 * 23 22 21
25 25 C 1.30743 * 109.94105 * 0.43675 * 24 23 22
26 26 N 1.35925 * 109.20482 * 359.55878 * 25 24 23
27 27 C 1.36324 * 120.17074 * 180.02562 * 19 17 16
28 28 H 0.97003 * 119.99991 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.46943 * 59.99779 * 10 9 7
30 30 H 1.09005 * 109.47034 * 299.99674 * 10 9 7
31 31 H 0.97006 * 119.99828 * 0.02562 * 13 11 10
32 32 H 1.09005 * 109.46954 * 59.99897 * 14 13 11
33 33 H 1.09007 * 109.47449 * 300.00225 * 14 13 11
34 34 H 1.08999 * 109.46900 * 60.00174 * 15 14 13
35 35 H 1.08997 * 109.47335 * 300.00277 * 15 14 13
36 36 H 0.96994 * 119.99774 * 0.02562 * 16 15 14
37 37 H 1.07999 * 120.46984 * 359.97438 * 20 19 17
38 38 H 1.07997 * 120.28901 * 180.02562 * 21 20 19
39 39 H 1.08007 * 126.16774 * 0.02577 * 23 22 21
40 40 H 1.08002 * 125.40208 * 179.83155 * 25 24 23
41 41 H 1.08005 * 119.74353 * 0.02598 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 2.4978 2.0464 -1.4000
5 1 1.4478 2.6527 0.7001
6 1 3.5478 1.4402 0.7001
7 6 2.0103 -1.2020 0.0005
8 1 3.0903 -1.2020 0.0001
9 16 1.1293 -2.7279 0.0005
10 6 2.5158 -3.8914 0.0005
11 6 1.9874 -5.3027 0.0012
12 8 0.7911 -5.5023 0.0021
13 7 2.8441 -6.3431 0.0008
14 6 2.3304 -7.7150 0.0019
15 6 3.5025 -8.6985 0.0018
16 7 2.9887 -10.0705 0.0024
17 6 3.8455 -11.1109 0.0019
18 8 5.0449 -10.9108 0.0014
19 6 3.3282 -12.4924 0.0019
20 6 1.8838 -12.7377 0.0018
21 6 1.4334 -14.0160 0.0013
22 6 2.3631 -15.0792 0.0001
23 6 2.2222 -16.4511 -0.0011
24 7 3.4457 -16.9837 -0.0075
25 6 4.3451 -16.0347 -0.0010
26 7 3.7210 -14.8272 0.0002
27 6 4.1917 -13.5473 0.0019
28 1 -0.4850 0.8401 -0.0004
29 1 3.1245 -3.7313 0.8905
30 1 3.1244 -3.7314 -0.8895
31 1 3.8009 -6.1835 0.0004
32 1 1.7209 -7.8755 -0.8874
33 1 1.7227 -7.8748 0.8927
34 1 4.1116 -8.5379 0.8913
35 1 4.1106 -8.5390 -0.8886
36 1 2.0320 -10.2301 0.0024
37 1 1.1880 -11.9117 0.0022
38 1 0.3728 -14.2198 0.0008
39 1 1.2897 -16.9961 -0.0018
40 1 5.4144 -16.1862 -0.0014
41 1 5.2567 -13.3679 0.0023
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001757918819.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:52
Heat of formation + Delta-G solvation = -8.721058 kcal
Electronic energy + Delta-G solvation = -25234.513879 eV
Core-core repulsion = 21240.949696 eV
Total energy + Delta-G solvation = -3993.564182 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.104 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.76624 -41.08819 -40.53401 -37.96372 -37.01379 -35.20735 -34.57363 -34.38088
-32.36816 -31.44363 -29.26184 -29.14087 -27.64064 -25.64654 -23.99625 -23.62347
-22.84337 -22.16917 -21.53578 -19.87984 -19.34859 -18.46216 -17.87899 -17.54158
-17.23790 -17.16364 -16.89119 -16.87015 -16.79203 -16.24905 -15.90154 -15.63285
-15.56814 -15.18173 -15.00118 -14.68426 -14.50192 -14.38630 -14.04104 -13.70355
-13.15415 -13.01135 -12.92375 -12.88790 -12.77377 -12.65780 -12.58857 -11.80348
-11.72640 -11.45171 -11.35394 -11.13353 -10.99719 -10.51271 -10.26558 -10.24463
-10.12758 -8.64987 -8.61902 -8.33945 -6.11435 -0.49216 -0.01207 1.22396
1.34431 1.43215 1.48154 1.53554 1.57490 1.60383 1.90277 2.04906
2.28195 2.46529 2.52679 3.00609 3.32510 3.35299 3.44854 3.61405
3.64953 3.72782 3.82776 3.90221 4.02032 4.02116 4.33027 4.36070
4.44090 4.50404 4.54525 4.75191 4.82295 4.83911 4.89032 5.10261
5.16825 5.37995 5.42596 5.43328 5.53251 6.02461 6.20823 6.30680
6.46108 6.77015 6.98295 7.07977 7.21386 8.75142
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.044621 B = 0.001331 C = 0.001294
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 627.359820 B =21024.779915 C =21626.387525
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.015 3.985
3 Si 0.996 3.004
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.259 1.259
7 C -0.547 4.547
8 H 0.083 0.917
9 S -0.150 6.150
10 C -0.132 4.132
11 C 0.538 3.462
12 O -0.561 6.561
13 N -0.712 5.712
14 C 0.113 3.887
15 C 0.120 3.880
16 N -0.705 5.705
17 C 0.576 3.424
18 O -0.571 6.571
19 C -0.164 4.164
20 C -0.106 4.106
21 C -0.074 4.074
22 C -0.013 4.013
23 C -0.030 4.030
24 N -0.486 5.486
25 C 0.152 3.848
26 N -0.385 5.385
27 C 0.129 3.871
28 H 0.271 0.729
29 H 0.111 0.889
30 H 0.111 0.889
31 H 0.419 0.581
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.082 0.918
35 H 0.082 0.918
36 H 0.418 0.582
37 H 0.171 0.829
38 H 0.181 0.819
39 H 0.201 0.799
40 H 0.245 0.755
41 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.950 -30.762 0.014 32.038
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.190 4.190
3 Si 0.818 3.182
4 H -0.194 1.194
5 H -0.204 1.204
6 H -0.182 1.182
7 C -0.695 4.695
8 H 0.101 0.899
9 S 0.077 5.923
10 C -0.283 4.283
11 C 0.323 3.677
12 O -0.439 6.439
13 N -0.367 5.367
14 C -0.011 4.011
15 C -0.005 4.005
16 N -0.358 5.358
17 C 0.364 3.636
18 O -0.452 6.452
19 C -0.170 4.170
20 C -0.127 4.127
21 C -0.093 4.093
22 C -0.120 4.120
23 C -0.182 4.182
24 N -0.199 5.199
25 C -0.123 4.123
26 N -0.058 5.058
27 C 0.006 3.994
28 H 0.080 0.920
29 H 0.129 0.871
30 H 0.129 0.871
31 H 0.256 0.744
32 H 0.093 0.907
33 H 0.093 0.907
34 H 0.100 0.900
35 H 0.100 0.900
36 H 0.256 0.744
37 H 0.188 0.812
38 H 0.199 0.801
39 H 0.218 0.782
40 H 0.261 0.739
41 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges 7.952 -31.753 0.010 32.734
hybrid contribution 1.437 2.045 -0.008 2.500
sum 9.389 -29.708 0.002 31.156
Atomic orbital electron populations
1.70174 1.07934 1.28585 1.48033 1.26085 0.95920 1.03214 0.93744
0.84983 0.78234 0.76193 0.78763 1.19368 1.20369 1.18243 1.23217
0.95382 0.92096 1.58832 0.89903 1.85537 1.10498 0.99172 1.97062
1.23385 1.03616 0.94310 1.06991 1.19976 0.86136 0.86526 0.75013
1.90700 1.17270 1.86012 1.49947 1.45492 1.10601 1.04672 1.75921
1.21400 0.96164 0.80080 1.03452 1.21361 0.95522 0.79593 1.03994
1.45483 1.11000 1.05007 1.74329 1.17756 0.85504 0.84571 0.75796
1.90827 1.16324 1.86241 1.51771 1.20333 0.94766 0.92046 1.09875
1.22345 0.92229 0.98369 0.99708 1.20809 1.00352 0.89362 0.98747
1.20195 0.83607 0.97207 1.10994 1.23060 0.96908 0.89254 1.08955
1.69980 1.00871 1.32290 1.16793 1.25926 1.01311 0.76386 1.08681
1.43133 1.08475 1.06646 1.47515 1.21897 1.01362 0.80505 0.95633
0.92008 0.87086 0.87060 0.74394 0.90691 0.90700 0.89993 0.90005
0.74396 0.81210 0.80139 0.78187 0.73940 0.79380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.99 13.22 21.65 0.29 -54.70 16
2 C 0.02 0.85 5.49 84.86 0.47 1.32 16
3 Si 1.00 42.77 29.55 68.60 2.03 44.80 16
4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16
5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16
6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16
7 C -0.55 -30.53 9.50 67.95 0.65 -29.89 16
8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16
9 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16
10 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16
11 C 0.54 17.81 7.85 87.66 0.69 18.50 16
12 O -0.56 -23.77 15.86 -3.01 -0.05 -23.82 16
13 N -0.71 -14.64 5.56 -463.07 -2.57 -17.21 16
14 C 0.11 1.79 5.79 86.38 0.50 2.29 16
15 C 0.12 1.42 5.79 86.38 0.50 1.92 16
16 N -0.71 -7.32 5.51 -466.27 -2.57 -9.89 16
17 C 0.58 8.43 7.77 86.69 0.67 9.10 16
18 O -0.57 -12.34 16.28 -4.04 -0.07 -12.40 16
19 C -0.16 -1.91 5.98 -19.12 -0.11 -2.02 16
20 C -0.11 -0.77 9.73 23.80 0.23 -0.54 16
21 C -0.07 -0.58 10.09 22.38 0.23 -0.35 16
22 C -0.01 -0.17 6.78 38.81 0.26 0.10 16
23 C -0.03 -0.43 12.00 84.37 1.01 0.58 16
24 N -0.49 -8.46 11.18 -197.51 -2.21 -10.67 16
25 C 0.15 1.97 12.76 179.91 2.30 4.27 16
26 N -0.39 -5.11 2.94 -349.85 -1.03 -6.14 16
27 C 0.13 1.55 10.51 83.54 0.88 2.43 16
28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16
29 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16
30 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16
31 H 0.42 5.93 8.47 -92.70 -0.79 5.14 16
32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16
33 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16
34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
36 H 0.42 2.21 6.57 -92.71 -0.61 1.61 16
37 H 0.17 0.20 6.58 -2.91 -0.02 0.18 16
38 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16
39 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16
40 H 0.24 1.22 8.06 -2.91 -0.02 1.20 16
41 H 0.19 1.81 7.56 -2.91 -0.02 1.79 16
Total: -1.00 -85.75 376.51 1.06 -84.68
By element:
Atomic # 1 Polarization: 11.57 SS G_CDS: -0.30 Total: 11.28 kcal
Atomic # 6 Polarization: -5.43 SS G_CDS: 8.70 Total: 3.28 kcal
Atomic # 7 Polarization: -90.52 SS G_CDS: -8.10 Total: -98.61 kcal
Atomic # 8 Polarization: -36.11 SS G_CDS: -0.11 Total: -36.22 kcal
Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal
Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal
Total: -85.75 1.06 -84.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001757918819.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.961 kcal
(2) G-P(sol) polarization free energy of solvation -85.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds