Wall clock time and date at job start Wed Apr 1 2020 04:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48507 * 109.47215 * 269.99989 * 3 2 1 5 5 H 1.48489 * 109.47469 * 30.00463 * 3 2 1 6 6 H 1.48505 * 109.47053 * 150.00608 * 3 2 1 7 7 C 1.38805 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99926 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00080 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47493 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99896 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00676 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00459 * 180.02562 * 13 11 10 15 15 C 1.53493 * 114.20796 * 155.00124 * 14 13 11 16 16 N 1.47065 * 87.98695 * 87.51476 * 15 14 13 17 17 C 1.34777 * 136.06111 * 207.07942 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46912 * 180.02562 * 19 17 16 21 21 C 1.53787 * 113.61239 * 272.49682 * 20 19 17 22 22 C 1.53781 * 87.07799 * 220.02294 * 21 20 19 23 23 F 1.39908 * 113.61177 * 270.87982 * 22 21 20 24 24 F 1.39897 * 113.61354 * 139.98366 * 22 21 20 25 25 C 1.53776 * 87.08649 * 25.43327 * 22 21 20 26 26 C 1.47071 * 87.88672 * 27.34164 * 16 15 14 27 27 H 0.97006 * 119.99903 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47349 * 59.99326 * 10 9 7 29 29 H 1.09001 * 109.47136 * 299.99817 * 10 9 7 30 30 H 0.97001 * 119.99406 * 359.97438 * 13 11 10 31 31 H 1.08997 * 113.28040 * 21.93150 * 14 13 11 32 32 H 1.08997 * 113.46918 * 332.73800 * 15 14 13 33 33 H 1.08999 * 113.51857 * 202.30491 * 15 14 13 34 34 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 35 35 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 36 36 H 1.08992 * 112.85173 * 43.80262 * 20 19 17 37 37 H 1.08998 * 113.61082 * 334.56508 * 21 20 19 38 38 H 1.08997 * 113.61565 * 105.47270 * 21 20 19 39 39 H 1.08999 * 113.61671 * 220.02331 * 25 22 21 40 40 H 1.09001 * 113.69175 * 89.12786 * 25 22 21 41 41 H 1.09001 * 113.46536 * 87.43211 * 26 16 15 42 42 H 1.08993 * 113.47241 * 217.87860 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0018 14 6 2.3301 -7.7152 -0.0030 15 6 3.2977 -8.7491 -0.5952 16 7 3.8885 -8.8869 0.7445 17 6 5.0922 -9.2311 1.2436 18 8 5.9992 -9.5221 0.4929 19 6 5.3111 -9.2543 2.7345 20 6 6.7520 -9.6741 3.0319 21 6 6.9423 -11.1971 3.1292 22 6 7.8890 -10.9242 4.3099 23 9 9.2212 -10.7335 3.9274 24 9 7.7497 -11.8355 5.3621 25 6 7.1160 -9.6123 4.5248 26 6 2.5859 -8.4901 1.3002 27 1 -0.4850 0.8401 0.0004 28 1 3.1243 -3.7314 0.8894 29 1 3.1243 -3.7315 -0.8905 30 1 3.8006 -6.1836 -0.0022 31 1 1.3093 -7.7926 -0.3772 32 1 3.9838 -8.3299 -1.3311 33 1 2.8042 -9.6550 -0.9472 34 1 4.6233 -9.9657 3.1916 35 1 5.1307 -8.2603 3.1437 36 1 7.4782 -9.1826 2.3847 37 1 6.0361 -11.7331 3.4112 38 1 7.4397 -11.6313 2.2620 39 1 7.7536 -8.7672 4.7840 40 1 6.2571 -9.7138 5.1882 41 1 1.9040 -9.3275 1.4482 42 1 2.6655 -7.8503 2.1790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759177577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:51 Heat of formation + Delta-G solvation = -112.112032 kcal Electronic energy + Delta-G solvation = -27101.817648 eV Core-core repulsion = 22653.080910 eV Total energy + Delta-G solvation = -4448.736738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.18973 -47.52889 -41.06290 -39.53074 -38.52675 -37.52723 -33.64967 -32.47871 -31.33363 -29.73833 -28.23280 -26.75766 -26.43868 -25.54065 -23.83840 -22.06403 -20.71066 -20.37431 -19.30023 -17.98715 -17.82090 -17.47961 -17.00279 -16.90310 -16.61256 -16.29023 -16.10699 -15.77241 -15.05645 -14.94944 -14.84645 -14.40114 -14.30274 -13.90658 -13.77909 -13.75971 -13.49159 -13.34008 -13.17805 -13.05694 -12.78594 -12.57545 -12.36420 -12.02863 -11.77695 -11.67888 -11.40701 -11.29810 -11.10573 -11.07371 -10.87373 -10.81174 -10.15007 -9.87878 -9.63284 -9.21475 -9.11703 -9.05473 -8.31643 -6.56724 -6.26964 -3.98127 2.23473 2.40474 2.83783 2.85807 3.04407 3.19198 3.23310 3.27301 3.32422 3.55151 3.71659 3.83478 3.84262 4.02896 4.15377 4.22720 4.53544 4.62957 4.75323 4.89286 4.89548 4.95073 4.96910 4.99602 5.06430 5.08571 5.12739 5.19086 5.24592 5.27897 5.30731 5.40663 5.45126 5.70073 5.76186 5.78807 6.05310 6.42305 7.29999 7.50496 7.55088 7.76702 8.30112 8.41656 9.18709 10.80380 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.001843 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.971980 B =15185.999815 C =16459.098213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.718 5.718 14 C 0.114 3.886 15 C 0.094 3.906 16 N -0.649 5.649 17 C 0.542 3.458 18 O -0.538 6.538 19 C -0.123 4.123 20 C -0.089 4.089 21 C -0.159 4.159 22 C 0.253 3.747 23 F -0.179 7.179 24 F -0.193 7.193 25 C -0.162 4.162 26 C 0.081 3.919 27 H 0.269 0.731 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.140 -23.207 6.901 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.372 5.372 14 C 0.006 3.994 15 C -0.029 4.029 16 N -0.386 5.386 17 C 0.332 3.668 18 O -0.414 6.414 19 C -0.163 4.163 20 C -0.108 4.108 21 C -0.197 4.197 22 C 0.216 3.784 23 F -0.160 7.160 24 F -0.173 7.173 25 C -0.200 4.200 26 C -0.043 4.043 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.236 0.764 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.715 -23.648 6.614 26.408 hybrid contribution 2.598 1.144 0.171 2.844 sum 12.313 -22.504 6.786 26.534 Atomic orbital electron populations 1.70012 1.05944 1.27528 1.46743 1.24996 0.95046 0.99065 0.94467 0.86161 0.79404 0.81504 0.78397 1.20237 1.20728 1.19693 1.22858 0.94912 0.91581 1.59122 0.90894 1.85380 1.04654 0.96356 1.96745 1.23536 1.06784 0.95056 1.05111 1.20381 0.86447 0.86209 0.74548 1.90712 1.15248 1.85471 1.47135 1.45639 1.10127 1.04017 1.77407 1.22117 0.99645 0.81968 0.95690 1.23420 0.94166 0.98324 0.87029 1.49768 1.09817 1.68515 1.10477 1.20179 0.80329 0.75588 0.90664 1.90733 1.41375 1.48486 1.60841 1.21554 0.97223 1.04771 0.92750 1.22183 0.97231 0.95687 0.95656 1.24181 0.99719 0.98341 0.97456 1.22070 0.79382 0.90502 0.86417 1.93031 1.36505 1.95353 1.91089 1.93011 1.95500 1.69309 1.59509 1.24192 1.01159 0.96296 0.98369 1.23748 0.82874 0.98246 0.99449 0.92135 0.89117 0.89055 0.76409 0.85380 0.89725 0.88308 0.88352 0.87869 0.86653 0.87164 0.88478 0.88463 0.86758 0.88376 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.88 6.15 36.00 0.22 -2.66 16 11 C 0.54 8.83 7.85 -10.99 -0.09 8.75 16 12 O -0.51 -10.30 15.45 5.55 0.09 -10.22 16 13 N -0.72 -8.09 5.40 -53.49 -0.29 -8.38 16 14 C 0.11 0.99 4.61 -67.67 -0.31 0.67 16 15 C 0.09 0.70 8.38 -8.50 -0.07 0.63 16 16 N -0.65 -5.14 3.69 -185.05 -0.68 -5.83 16 17 C 0.54 4.96 8.08 -10.98 -0.09 4.88 16 18 O -0.54 -6.95 16.53 5.56 0.09 -6.86 16 19 C -0.12 -0.71 5.36 -27.88 -0.15 -0.86 16 20 C -0.09 -0.57 3.13 -89.80 -0.28 -0.85 16 21 C -0.16 -1.04 7.42 -25.92 -0.19 -1.23 16 22 C 0.25 1.94 3.27 -25.92 -0.08 1.86 16 23 F -0.18 -1.75 17.38 2.25 0.04 -1.71 16 24 F -0.19 -1.73 17.41 2.25 0.04 -1.70 16 25 C -0.16 -0.87 7.43 -25.92 -0.19 -1.06 16 26 C 0.08 0.53 8.25 -8.36 -0.07 0.46 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.40 3.91 8.76 -40.82 -0.36 3.55 16 31 H 0.13 1.20 7.45 -51.93 -0.39 0.81 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.38 7.84 -51.93 -0.41 -0.02 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.12 0.94 7.67 -51.93 -0.40 0.54 16 37 H 0.11 0.54 7.90 -51.93 -0.41 0.13 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.43 8.10 -51.93 -0.42 0.00 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -35.69 382.58 -8.29 -43.97 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.73 Total: -0.51 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.11 Total: -1.99 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.24 Total: -38.98 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.18 Total: -17.08 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.69 -8.29 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759177577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.137 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds