Wall clock time and date at job start Wed Apr 1 2020 04:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48507 * 109.47215 * 269.99989 * 3 2 1 5 5 H 1.48489 * 109.47469 * 30.00463 * 3 2 1 6 6 H 1.48505 * 109.47053 * 150.00608 * 3 2 1 7 7 C 1.38805 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99926 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00080 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47493 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99896 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00676 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00459 * 180.02562 * 13 11 10 15 15 C 1.53493 * 114.20796 * 155.00124 * 14 13 11 16 16 N 1.47065 * 87.98695 * 87.51476 * 15 14 13 17 17 C 1.34777 * 136.06111 * 207.07942 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46912 * 180.02562 * 19 17 16 21 21 C 1.53787 * 113.61239 * 272.49682 * 20 19 17 22 22 C 1.53781 * 87.07799 * 220.02294 * 21 20 19 23 23 F 1.39908 * 113.61177 * 270.87982 * 22 21 20 24 24 F 1.39897 * 113.61354 * 139.98366 * 22 21 20 25 25 C 1.53776 * 87.08649 * 25.43327 * 22 21 20 26 26 C 1.47071 * 87.88672 * 27.34164 * 16 15 14 27 27 H 0.97006 * 119.99903 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47349 * 59.99326 * 10 9 7 29 29 H 1.09001 * 109.47136 * 299.99817 * 10 9 7 30 30 H 0.97001 * 119.99406 * 359.97438 * 13 11 10 31 31 H 1.08997 * 113.28040 * 21.93150 * 14 13 11 32 32 H 1.08997 * 113.46918 * 332.73800 * 15 14 13 33 33 H 1.08999 * 113.51857 * 202.30491 * 15 14 13 34 34 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 35 35 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 36 36 H 1.08992 * 112.85173 * 43.80262 * 20 19 17 37 37 H 1.08998 * 113.61082 * 334.56508 * 21 20 19 38 38 H 1.08997 * 113.61565 * 105.47270 * 21 20 19 39 39 H 1.08999 * 113.61671 * 220.02331 * 25 22 21 40 40 H 1.09001 * 113.69175 * 89.12786 * 25 22 21 41 41 H 1.09001 * 113.46536 * 87.43211 * 26 16 15 42 42 H 1.08993 * 113.47241 * 217.87860 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0018 14 6 2.3301 -7.7152 -0.0030 15 6 3.2977 -8.7491 -0.5952 16 7 3.8885 -8.8869 0.7445 17 6 5.0922 -9.2311 1.2436 18 8 5.9992 -9.5221 0.4929 19 6 5.3111 -9.2543 2.7345 20 6 6.7520 -9.6741 3.0319 21 6 6.9423 -11.1971 3.1292 22 6 7.8890 -10.9242 4.3099 23 9 9.2212 -10.7335 3.9274 24 9 7.7497 -11.8355 5.3621 25 6 7.1160 -9.6123 4.5248 26 6 2.5859 -8.4901 1.3002 27 1 -0.4850 0.8401 0.0004 28 1 3.1243 -3.7314 0.8894 29 1 3.1243 -3.7315 -0.8905 30 1 3.8006 -6.1836 -0.0022 31 1 1.3093 -7.7926 -0.3772 32 1 3.9838 -8.3299 -1.3311 33 1 2.8042 -9.6550 -0.9472 34 1 4.6233 -9.9657 3.1916 35 1 5.1307 -8.2603 3.1437 36 1 7.4782 -9.1826 2.3847 37 1 6.0361 -11.7331 3.4112 38 1 7.4397 -11.6313 2.2620 39 1 7.7536 -8.7672 4.7840 40 1 6.2571 -9.7138 5.1882 41 1 1.9040 -9.3275 1.4482 42 1 2.6655 -7.8503 2.1790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759177577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:50 Heat of formation + Delta-G solvation = -136.692263 kcal Electronic energy + Delta-G solvation = -27102.883526 eV Core-core repulsion = 22653.080910 eV Total energy + Delta-G solvation = -4449.802617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.83166 -48.18795 -41.79711 -40.43715 -39.39985 -38.25031 -34.74970 -34.56377 -32.03398 -30.86998 -29.11564 -27.64009 -27.21400 -27.00328 -24.46553 -22.89493 -21.77807 -20.90538 -19.99625 -19.81685 -18.44085 -18.24077 -17.89767 -17.56303 -17.28317 -17.18784 -16.92980 -16.86626 -16.67456 -16.29397 -15.90033 -15.46990 -15.05688 -14.83422 -14.70965 -14.50804 -14.40213 -14.29187 -14.13796 -13.94703 -13.50553 -13.38425 -13.32072 -13.15336 -12.97980 -12.88809 -12.60672 -12.31906 -12.17913 -12.01671 -11.87668 -11.72531 -11.39122 -11.13522 -11.01306 -10.86208 -10.26784 -10.15277 -9.77973 -8.64202 -8.34065 -6.10940 1.27217 1.42704 1.47181 1.56723 1.57379 1.60142 1.80557 2.19669 2.28658 2.51632 2.82755 3.00250 3.17395 3.29930 3.31725 3.35598 3.40511 3.65112 3.89281 3.94612 4.11882 4.28436 4.30986 4.33700 4.44415 4.48971 4.52339 4.53213 4.64491 4.65462 4.67229 4.70591 4.78272 4.82452 4.86974 4.89371 5.28015 5.43262 5.48742 6.20702 6.41872 6.69341 7.07935 7.11230 7.19979 8.74783 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.001843 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.971980 B =15185.999815 C =16459.098213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.143 6.143 10 C -0.133 4.133 11 C 0.544 3.456 12 O -0.554 6.554 13 N -0.696 5.696 14 C 0.100 3.900 15 C 0.098 3.902 16 N -0.650 5.650 17 C 0.536 3.464 18 O -0.584 6.584 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.156 4.156 22 C 0.235 3.765 23 F -0.197 7.197 24 F -0.201 7.201 25 C -0.146 4.146 26 C 0.094 3.906 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.412 0.588 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.861 -23.757 7.976 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.085 5.915 10 C -0.284 4.284 11 C 0.331 3.669 12 O -0.431 6.431 13 N -0.349 5.349 14 C -0.006 4.006 15 C -0.025 4.025 16 N -0.385 5.385 17 C 0.328 3.672 18 O -0.464 6.464 19 C -0.155 4.155 20 C -0.107 4.107 21 C -0.193 4.193 22 C 0.199 3.801 23 F -0.178 7.178 24 F -0.182 7.182 25 C -0.183 4.183 26 C -0.029 4.029 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.248 0.752 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.460 -24.234 7.698 27.495 hybrid contribution 2.424 1.164 -0.206 2.697 sum 12.884 -23.070 7.491 27.465 Atomic orbital electron populations 1.70168 1.07833 1.28578 1.47977 1.26078 0.95959 1.03183 0.93837 0.84996 0.78237 0.76307 0.78719 1.19482 1.20293 1.18326 1.23201 0.95309 0.92209 1.58794 0.90100 1.85489 1.10120 0.98908 1.97031 1.23385 1.03723 0.94661 1.06679 1.19914 0.86145 0.86271 0.74610 1.90705 1.16948 1.85852 1.49623 1.45358 1.09967 1.04217 1.75349 1.22326 0.99658 0.80491 0.98143 1.23476 0.93536 0.98673 0.86849 1.49839 1.10068 1.67828 1.10808 1.20787 0.79852 0.74687 0.91839 1.90721 1.42814 1.50705 1.62192 1.21595 0.97017 1.06488 0.90354 1.22064 0.97413 0.95256 0.96014 1.24234 1.00039 0.98753 0.96322 1.22538 0.78861 0.91893 0.86832 1.92990 1.38008 1.95502 1.91304 1.92989 1.95467 1.69840 1.59943 1.24186 1.01457 0.94809 0.97883 1.23799 0.82345 0.98728 0.98015 0.91994 0.87266 0.87608 0.75219 0.85848 0.90807 0.85866 0.85573 0.86200 0.89016 0.85061 0.90057 0.88065 0.84251 0.85327 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.43 13.22 21.65 0.29 -54.15 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 42.67 29.55 68.60 2.03 44.69 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.55 -30.31 9.50 67.96 0.65 -29.67 16 8 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 9 S -0.14 -7.52 20.57 -56.49 -1.16 -8.69 16 10 C -0.13 -4.86 6.15 71.23 0.44 -4.42 16 11 C 0.54 17.36 7.85 87.66 0.69 18.05 16 12 O -0.55 -22.29 15.45 -3.05 -0.05 -22.34 16 13 N -0.70 -14.32 5.40 -441.52 -2.38 -16.70 16 14 C 0.10 1.51 4.61 45.55 0.21 1.72 16 15 C 0.10 1.22 8.38 83.18 0.70 1.92 16 16 N -0.65 -8.43 3.69 -857.76 -3.16 -11.60 16 17 C 0.54 8.66 8.08 87.66 0.71 9.37 16 18 O -0.58 -14.73 16.53 -3.02 -0.05 -14.78 16 19 C -0.12 -0.96 5.36 29.85 0.16 -0.80 16 20 C -0.09 -0.99 3.13 -10.26 -0.03 -1.02 16 21 C -0.16 -1.84 7.42 31.12 0.23 -1.61 16 22 C 0.23 3.39 3.27 31.12 0.10 3.50 16 23 F -0.20 -3.90 17.38 44.97 0.78 -3.12 16 24 F -0.20 -3.41 17.41 44.97 0.78 -2.63 16 25 C -0.15 -1.23 7.43 31.12 0.23 -1.00 16 26 C 0.09 0.90 8.25 83.27 0.69 1.58 16 27 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 28 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 29 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.41 7.04 8.76 -92.71 -0.81 6.23 16 31 H 0.12 2.10 7.45 -2.39 -0.02 2.08 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.13 0.39 7.84 -2.39 -0.02 0.37 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 1.49 7.67 -2.39 -0.02 1.47 16 37 H 0.13 0.96 7.90 -2.39 -0.02 0.94 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.14 0.50 8.10 -2.39 -0.02 0.48 16 41 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -80.89 382.58 2.55 -78.34 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.25 Total: 12.07 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.23 Total: -1.11 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -5.26 Total: -82.44 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.10 Total: -37.11 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.56 Total: -5.75 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.69 kcal Total: -80.89 2.55 -78.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759177577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.352 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds