Wall clock time and date at job start Fri Apr 10 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40296 * 126.09086 * 2 1 4 4 C 1.31071 * 108.26638 * 179.91009 * 3 2 1 5 5 C 1.39298 * 108.08243 * 0.02562 * 4 3 2 6 6 C 1.34320 * 126.09174 * 179.97438 * 2 1 3 7 7 C 1.50834 * 128.03454 * 0.23870 * 6 2 1 8 8 C 1.53366 * 108.37991 * 163.32799 * 7 6 2 9 9 C 1.53138 * 109.48951 * 49.96224 * 8 7 6 10 10 C 1.50835 * 127.89913 * 180.02562 * 5 4 3 11 11 H 1.08997 * 109.68489 * 283.21259 * 10 5 4 12 12 N 1.46506 * 109.68477 * 43.72990 * 10 5 4 13 13 C 1.34777 * 119.99873 * 275.00112 * 12 10 5 14 14 O 1.21592 * 119.99797 * 359.97438 * 13 12 10 15 15 N 1.34774 * 119.99902 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99966 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47273 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99869 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99922 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00388 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47360 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47101 * 120.00114 * 21 19 17 24 24 H 1.48501 * 109.47339 * 240.00023 * 21 19 17 25 25 H 1.09003 * 109.47431 * 270.02425 * 1 2 3 26 26 H 1.09001 * 109.47056 * 30.02481 * 1 2 3 27 27 H 1.09002 * 109.47289 * 150.02770 * 1 2 3 28 28 H 1.08001 * 125.95720 * 180.02562 * 4 3 2 29 29 H 1.08992 * 109.68493 * 283.05320 * 7 6 2 30 30 H 1.09000 * 109.67591 * 43.60982 * 7 6 2 31 31 H 1.08996 * 109.46068 * 169.95703 * 8 7 6 32 32 H 1.09000 * 109.46266 * 289.94470 * 8 7 6 33 33 H 1.08998 * 109.46087 * 169.69686 * 9 8 7 34 34 H 1.09000 * 109.48776 * 49.71134 * 9 8 7 35 35 H 0.96995 * 120.00050 * 94.72227 * 12 10 5 36 36 H 0.96999 * 120.00050 * 0.02562 * 15 13 12 37 37 H 1.09005 * 109.47136 * 300.00071 * 16 15 13 38 38 H 1.08996 * 109.47174 * 59.99413 * 16 15 13 39 39 H 0.96998 * 120.00131 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7325 0.0020 5 6 3.5455 -0.6605 0.0027 6 6 2.2562 -1.0854 0.0005 7 6 1.8437 -2.5362 -0.0038 8 6 3.0539 -3.3819 -0.4190 9 6 4.2696 -2.9813 0.4216 10 6 4.7399 -1.5816 0.0053 11 1 5.1757 -1.6206 -0.9930 12 7 5.7376 -1.0932 0.9605 13 6 6.6282 -0.1544 0.5837 14 8 6.6038 0.2869 -0.5490 15 7 7.5457 0.2953 1.4625 16 6 8.5141 1.3153 1.0529 17 6 9.4213 1.6409 2.2113 18 1 9.2894 1.1385 3.1583 19 6 10.4196 2.5801 2.0624 20 7 10.5800 3.1922 0.9095 21 14 11.5436 2.9841 3.4986 22 1 11.1577 2.1643 4.6752 23 1 12.9497 2.6839 3.1266 24 1 11.4177 4.4248 3.8358 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 4.4105 1.3706 0.0029 29 1 1.5170 -2.8280 0.9942 30 1 1.0309 -2.6846 -0.7148 31 1 2.8323 -4.4368 -0.2575 32 1 3.2699 -3.2134 -1.4740 33 1 5.0750 -3.6977 0.2598 34 1 3.9960 -2.9749 1.4767 35 1 5.7547 -1.4426 1.8652 36 1 7.5654 -0.0570 2.3661 37 1 9.1090 0.9383 0.2209 38 1 7.9840 2.2155 0.7418 39 1 11.2826 3.8527 0.8047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335321776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:44 Heat of formation + Delta-G solvation = 9.749999 kcal Electronic energy + Delta-G solvation = -21518.330815 eV Core-core repulsion = 18268.002105 eV Total energy + Delta-G solvation = -3250.328710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.57578 -40.71818 -37.83196 -36.08642 -35.18470 -34.41473 -33.80952 -30.54392 -30.20129 -28.66184 -27.45744 -24.99280 -23.83268 -22.89862 -21.88925 -21.61875 -19.91349 -19.46461 -18.10346 -17.85100 -17.22071 -16.71870 -16.32803 -16.19393 -15.60009 -15.20721 -15.00202 -14.90356 -14.60777 -14.36530 -14.00890 -13.85835 -13.83358 -13.67138 -13.29557 -12.85349 -12.79662 -12.73286 -12.20198 -12.13705 -11.77497 -11.61433 -11.53998 -11.42046 -11.11582 -10.79633 -10.23589 -10.18549 -9.56018 -9.24864 -8.26925 -6.43192 0.86646 1.43486 1.45513 1.58190 1.62196 1.65073 2.12643 2.35165 2.41870 3.07988 3.54563 3.61742 3.68197 3.91924 4.09985 4.18346 4.27380 4.40900 4.46314 4.58466 4.64125 4.69294 4.74154 4.89821 4.98033 5.12644 5.20553 5.27711 5.28953 5.30798 5.42691 5.52264 5.60320 5.69596 5.75866 5.88473 6.19820 6.35426 6.69128 6.69772 7.26524 7.40428 7.82562 8.85780 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.003640 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.401823 B = 7689.799861 C = 8191.938733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 N -0.346 5.346 4 C 0.052 3.948 5 C -0.272 4.272 6 C 0.102 3.898 7 C -0.050 4.050 8 C -0.106 4.106 9 C -0.116 4.116 10 C 0.241 3.759 11 H 0.060 0.940 12 N -0.724 5.724 13 C 0.692 3.308 14 O -0.644 6.644 15 N -0.726 5.726 16 C 0.287 3.713 17 C -0.553 4.553 18 H 0.083 0.917 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.987 3.013 22 H -0.253 1.253 23 H -0.278 1.278 24 H -0.280 1.280 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.143 0.857 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.408 0.592 36 H 0.403 0.597 37 H -0.015 1.015 38 H -0.019 1.019 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.019 -18.126 2.618 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.151 5.151 3 N -0.169 5.169 4 C -0.132 4.132 5 C -0.284 4.284 6 C -0.030 4.030 7 C -0.088 4.088 8 C -0.144 4.144 9 C -0.154 4.154 10 C 0.134 3.866 11 H 0.078 0.922 12 N -0.380 5.380 13 C 0.392 3.608 14 O -0.527 6.527 15 N -0.379 5.379 16 C 0.163 3.837 17 C -0.591 4.591 18 H 0.101 0.899 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.176 1.176 23 H -0.203 1.203 24 H -0.206 1.206 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.244 0.756 36 H 0.238 0.762 37 H 0.003 0.997 38 H -0.001 1.001 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.880 -16.551 1.503 28.278 hybrid contribution 1.612 0.528 0.824 1.886 sum -21.267 -16.023 2.327 26.729 Atomic orbital electron populations 1.22250 0.71791 1.06063 1.04852 1.48644 1.07853 1.02899 1.55717 1.77469 1.01884 1.09436 1.28096 1.23360 0.94277 0.96314 0.99234 1.20488 0.95778 0.93175 1.18992 1.21599 0.89658 0.92538 0.99157 1.20626 0.99806 0.83441 1.04925 1.21553 0.92145 1.00985 0.99712 1.21889 0.99435 0.92356 1.01739 1.19176 0.83255 0.92088 0.92053 0.92155 1.45009 1.33524 1.42935 1.16493 1.16333 0.79920 0.80197 0.84375 1.90843 1.76772 1.63596 1.21466 1.45304 1.33936 1.44041 1.14669 1.18365 0.85620 0.84584 0.95082 1.21639 1.15472 1.23773 0.98191 0.89875 1.26083 0.99133 0.95193 0.99308 1.70157 1.33559 1.26959 1.26367 0.85086 0.77582 0.78064 0.78291 1.17609 1.20316 1.20563 0.89195 0.89601 0.85966 0.83959 0.87098 0.87479 0.86758 0.91953 0.89520 0.89525 0.75562 0.76209 0.99673 1.00061 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 11.32 127.77 1.45 2.57 16 2 N -0.37 -9.11 4.00 -356.00 -1.42 -10.53 16 3 N -0.35 -12.33 12.59 -57.27 -0.72 -13.05 16 4 C 0.05 1.99 11.32 85.06 0.96 2.96 16 5 C -0.27 -8.24 5.60 -20.14 -0.11 -8.35 16 6 C 0.10 2.26 6.73 41.64 0.28 2.54 16 7 C -0.05 -0.49 5.90 30.01 0.18 -0.31 16 8 C -0.11 -1.06 5.90 30.76 0.18 -0.87 16 9 C -0.12 -1.76 5.39 30.78 0.17 -1.59 16 10 C 0.24 6.64 2.81 44.43 0.12 6.77 16 11 H 0.06 2.04 7.60 -2.39 -0.02 2.02 16 12 N -0.72 -22.48 5.03 -460.52 -2.32 -24.79 16 13 C 0.69 30.33 7.80 179.06 1.40 31.73 16 14 O -0.64 -34.66 15.11 -4.01 -0.06 -34.72 16 15 N -0.73 -32.91 5.55 -482.30 -2.68 -35.58 16 16 C 0.29 16.57 5.43 85.63 0.46 17.04 16 17 C -0.55 -31.15 9.28 25.60 0.24 -30.91 16 18 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 21 Si 0.99 43.48 29.54 68.60 2.03 45.51 16 22 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.12 0.60 7.57 -2.39 -0.02 0.58 16 28 H 0.14 6.54 6.92 -2.91 -0.02 6.52 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.54 7.76 -2.39 -0.02 0.52 16 31 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.41 9.67 8.61 -92.71 -0.80 8.87 16 36 H 0.40 15.15 8.34 -92.71 -0.77 14.38 16 37 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 38 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -85.74 325.26 0.41 -85.34 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.49 Total: 23.29 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 5.79 Total: 22.14 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -6.85 Total: -141.56 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.06 Total: -34.72 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -85.74 0.41 -85.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335321776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.089 kcal (2) G-P(sol) polarization free energy of solvation -85.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds