Wall clock time and date at job start Fri Apr 10 2020 14:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.45761 * 117.94844 * 2 1 4 4 C 1.52923 * 110.48732 * 160.92561 * 3 2 1 5 5 C 1.53337 * 108.67551 * 50.74986 * 4 3 2 6 6 C 1.53068 * 108.42929 * 292.46903 * 5 4 3 7 7 H 1.09002 * 109.40169 * 288.77167 * 6 5 4 8 8 N 1.46498 * 109.40139 * 168.94332 * 6 5 4 9 9 C 1.39993 * 120.00052 * 154.82968 * 8 6 5 10 10 C 1.40419 * 125.97249 * 359.71599 * 9 8 6 11 11 C 1.35252 * 107.86305 * 179.82950 * 10 9 8 12 12 N 1.34961 * 107.85990 * 0.42995 * 11 10 9 13 13 C 1.46498 * 125.97218 * 179.73264 * 12 11 10 14 14 C 1.50701 * 109.47473 * 125.02457 * 13 12 11 15 15 H 1.08001 * 119.99393 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00221 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00017 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99776 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47319 * 90.00166 * 18 16 14 20 20 H 1.48497 * 109.46913 * 209.99795 * 18 16 14 21 21 H 1.48500 * 109.47356 * 330.00165 * 18 16 14 22 22 N 1.31225 * 125.97626 * 180.02562 * 9 8 6 23 23 C 1.33182 * 117.99760 * 179.97438 * 2 1 3 24 24 O 1.21283 * 118.11795 * 2.21476 * 23 2 1 25 25 H 1.09001 * 109.47167 * 89.99729 * 1 2 3 26 26 H 1.09004 * 109.47364 * 210.00245 * 1 2 3 27 27 H 1.09005 * 109.47194 * 330.00312 * 1 2 3 28 28 H 1.09004 * 109.29628 * 40.61340 * 3 2 1 29 29 H 1.08993 * 109.29838 * 281.23744 * 3 2 1 30 30 H 1.08999 * 109.60042 * 290.99316 * 4 3 2 31 31 H 1.09003 * 109.73458 * 170.59132 * 4 3 2 32 32 H 1.08998 * 109.67455 * 172.73195 * 5 4 3 33 33 H 1.09006 * 109.70566 * 52.22290 * 5 4 3 34 34 H 0.97002 * 120.00250 * 334.83001 * 8 6 5 35 35 H 1.08005 * 126.06950 * 359.96524 * 10 9 8 36 36 H 1.08000 * 126.07178 * 180.18007 * 11 10 9 37 37 H 1.09000 * 109.46779 * 245.02259 * 13 12 11 38 38 H 1.08995 * 109.47349 * 5.01861 * 13 12 11 39 39 H 0.97000 * 119.99812 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 6 4.2492 -0.0014 -0.3396 6 6 3.5838 -1.3240 0.0487 7 1 3.8880 -1.5997 1.0584 8 7 3.9994 -2.3712 -0.8878 9 6 3.9837 -3.7131 -0.4892 10 6 3.6001 -4.1942 0.7730 11 6 3.7206 -5.5413 0.7577 12 7 4.1721 -5.9026 -0.4618 13 6 4.4483 -7.2709 -0.9064 14 6 3.6722 -7.5561 -2.1663 15 1 3.0364 -6.7944 -2.5929 16 6 3.7738 -8.7893 -2.7744 17 7 3.0961 -9.0384 -3.8736 18 14 4.8741 -10.1064 -2.0369 19 1 4.0921 -10.9225 -1.0737 20 1 5.3933 -10.9807 -3.1192 21 1 6.0116 -9.4633 -1.3315 22 7 4.3303 -4.7407 -1.2280 23 6 2.0901 -1.1759 0.0005 24 8 1.4146 -2.1824 -0.0404 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6270 1.9718 0.6697 29 1 2.1398 1.6998 -1.0090 30 1 3.6100 0.8726 1.5282 31 1 4.1401 2.0558 0.3065 32 1 5.3142 -0.0456 -0.1118 33 1 4.1092 0.1810 -1.4051 34 1 4.2855 -2.1348 -1.7840 35 1 3.2659 -3.5951 1.6072 36 1 3.4990 -6.2089 1.5772 37 1 5.5147 -7.3803 -1.1040 38 1 4.1491 -7.9732 -0.1285 39 1 3.1673 -9.9061 -4.3011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538706739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:57 Heat of formation + Delta-G solvation = 62.247270 kcal Electronic energy + Delta-G solvation = -21533.290925 eV Core-core repulsion = 18285.238668 eV Total energy + Delta-G solvation = -3248.052257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71064 -39.96649 -36.55134 -35.90875 -33.54348 -32.59679 -30.99273 -29.43017 -28.36409 -27.23918 -26.64253 -23.92233 -22.71826 -22.22398 -20.16311 -19.52542 -18.75133 -16.94078 -16.77019 -16.56505 -16.47902 -16.02835 -15.09091 -14.73670 -14.37317 -14.28664 -13.79583 -13.63276 -13.53548 -12.97159 -12.74797 -12.47609 -12.41260 -12.20143 -12.00350 -11.94367 -11.66509 -11.48513 -11.18076 -10.99793 -10.62903 -10.45976 -9.95996 -9.67180 -9.43075 -9.17098 -8.80394 -8.65590 -7.83579 -6.96052 -6.12117 -4.12994 2.58894 2.87946 2.99746 3.21967 3.27109 3.30173 3.35906 3.86089 4.14700 4.32595 4.38304 4.42899 4.49941 4.61850 5.02029 5.07649 5.15698 5.15986 5.20208 5.39634 5.44482 5.46242 5.57174 5.66187 5.76828 5.80437 5.97830 6.29094 6.36393 6.52885 6.55945 6.77279 7.06376 7.34721 7.42820 7.67756 8.03207 8.18605 8.27637 8.49222 8.91195 9.02151 9.43623 11.01003 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033651 B = 0.003681 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.860071 B = 7603.952583 C = 7862.637756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.113 3.887 4 C -0.131 4.131 5 C -0.130 4.130 6 C 0.169 3.831 7 H 0.107 0.893 8 N -0.708 5.708 9 C 0.315 3.685 10 C -0.308 4.308 11 C 0.062 3.938 12 N -0.329 5.329 13 C 0.235 3.765 14 C -0.529 4.529 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.891 5.891 18 Si 0.873 3.127 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.264 1.264 22 N -0.325 5.325 23 C 0.486 3.514 24 O -0.517 6.517 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.402 0.598 35 H 0.127 0.873 36 H 0.162 0.838 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 22.726 11.840 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.350 5.350 3 C -0.010 4.010 4 C -0.170 4.170 5 C -0.169 4.169 6 C 0.058 3.942 7 H 0.125 0.875 8 N -0.350 5.350 9 C 0.059 3.941 10 C -0.341 4.341 11 C -0.089 4.089 12 N -0.108 5.108 13 C 0.115 3.885 14 C -0.567 4.567 15 H 0.103 0.897 16 C -0.129 4.129 17 N -0.528 5.528 18 Si 0.699 3.301 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.189 1.189 22 N -0.156 5.156 23 C 0.271 3.729 24 O -0.390 6.390 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.145 0.855 36 H 0.179 0.821 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.996 21.461 10.650 23.979 hybrid contribution 0.028 -0.358 0.672 0.762 sum 1.024 21.103 11.322 23.970 Atomic orbital electron populations 1.21657 0.79929 1.02919 1.01937 1.47366 1.07232 1.05999 1.74400 1.21402 0.93186 0.84868 1.01529 1.21839 0.94665 0.99640 1.00832 1.21947 1.01048 0.92554 1.01319 1.20464 0.89119 0.88370 0.96284 0.87533 1.42975 1.76252 1.00106 1.15620 1.19030 0.97804 0.85183 0.92099 1.20622 1.21064 0.93701 0.98691 1.22269 1.00352 0.95759 0.90494 1.48454 1.48380 1.06431 1.07569 1.19927 0.97767 0.73465 0.97300 1.21166 1.27618 1.00528 1.07414 0.89661 1.24845 0.95404 0.97929 0.94728 1.69886 1.41194 1.23191 1.18565 0.86903 0.81469 0.82241 0.79449 1.19815 1.20650 1.18884 1.77443 1.30614 0.89770 1.17749 1.21255 0.92092 0.82789 0.76762 1.90799 1.65605 1.35529 1.47082 0.92891 0.90288 0.91622 0.90749 0.91839 0.90574 0.89236 0.89617 0.90509 0.76284 0.85515 0.82057 0.94353 0.93746 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.22 59.84 0.61 1.38 16 2 N -0.61 -6.52 3.20 -182.90 -0.59 -7.11 16 3 C 0.11 0.71 6.39 -4.48 -0.03 0.69 16 4 C -0.13 -0.69 6.02 -26.60 -0.16 -0.85 16 5 C -0.13 -1.00 5.50 -26.52 -0.15 -1.15 16 6 C 0.17 2.08 2.69 -69.30 -0.19 1.89 16 7 H 0.11 1.27 7.13 -51.93 -0.37 0.90 16 8 N -0.71 -11.56 5.15 -54.92 -0.28 -11.84 16 9 C 0.31 6.61 7.63 -154.54 -1.18 5.43 16 10 C -0.31 -6.08 9.33 -39.82 -0.37 -6.45 16 11 C 0.06 1.26 11.44 -17.24 -0.20 1.07 16 12 N -0.33 -7.97 3.67 -62.56 -0.23 -8.20 16 13 C 0.23 5.93 5.33 -5.19 -0.03 5.90 16 14 C -0.53 -15.85 9.79 -34.44 -0.34 -16.18 16 15 H 0.09 2.92 8.06 -52.49 -0.42 2.50 16 16 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -27.86 13.96 55.43 0.77 -27.09 16 18 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 22 N -0.32 -8.06 12.42 31.41 0.39 -7.67 16 23 C 0.49 6.97 7.19 -11.95 -0.09 6.89 16 24 O -0.52 -10.15 14.85 5.55 0.08 -10.07 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.95 7.20 -51.93 -0.37 0.57 16 27 H 0.07 0.43 7.86 -51.93 -0.41 0.02 16 28 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.40 6.15 8.71 -40.82 -0.36 5.79 16 35 H 0.13 2.20 7.44 -52.48 -0.39 1.81 16 36 H 0.16 2.65 8.06 -52.49 -0.42 2.22 16 37 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 38 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 39 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -38.02 322.64 -7.48 -45.50 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.62 Total: 4.60 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.21 Total: 0.69 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.06 Total: -61.91 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -38.02 -7.48 -45.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538706739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.752 kcal (2) G-P(sol) polarization free energy of solvation -38.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds