Wall clock time and date at job start Fri Apr 10 2020 14:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.45761 * 117.94844 * 2 1 4 4 C 1.52923 * 110.48732 * 160.92561 * 3 2 1 5 5 C 1.53337 * 108.67551 * 50.74986 * 4 3 2 6 6 C 1.53068 * 108.42929 * 292.46903 * 5 4 3 7 7 H 1.09002 * 109.40169 * 288.77167 * 6 5 4 8 8 N 1.46498 * 109.40139 * 168.94332 * 6 5 4 9 9 C 1.39993 * 120.00052 * 154.82968 * 8 6 5 10 10 C 1.40419 * 125.97249 * 359.71599 * 9 8 6 11 11 C 1.35252 * 107.86305 * 179.82950 * 10 9 8 12 12 N 1.34961 * 107.85990 * 0.42995 * 11 10 9 13 13 C 1.46498 * 125.97218 * 179.73264 * 12 11 10 14 14 C 1.50701 * 109.47473 * 125.02457 * 13 12 11 15 15 H 1.08001 * 119.99393 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00221 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00017 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99776 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47319 * 90.00166 * 18 16 14 20 20 H 1.48497 * 109.46913 * 209.99795 * 18 16 14 21 21 H 1.48500 * 109.47356 * 330.00165 * 18 16 14 22 22 N 1.31225 * 125.97626 * 180.02562 * 9 8 6 23 23 C 1.33182 * 117.99760 * 179.97438 * 2 1 3 24 24 O 1.21283 * 118.11795 * 2.21476 * 23 2 1 25 25 H 1.09001 * 109.47167 * 89.99729 * 1 2 3 26 26 H 1.09004 * 109.47364 * 210.00245 * 1 2 3 27 27 H 1.09005 * 109.47194 * 330.00312 * 1 2 3 28 28 H 1.09004 * 109.29628 * 40.61340 * 3 2 1 29 29 H 1.08993 * 109.29838 * 281.23744 * 3 2 1 30 30 H 1.08999 * 109.60042 * 290.99316 * 4 3 2 31 31 H 1.09003 * 109.73458 * 170.59132 * 4 3 2 32 32 H 1.08998 * 109.67455 * 172.73195 * 5 4 3 33 33 H 1.09006 * 109.70566 * 52.22290 * 5 4 3 34 34 H 0.97002 * 120.00250 * 334.83001 * 8 6 5 35 35 H 1.08005 * 126.06950 * 359.96524 * 10 9 8 36 36 H 1.08000 * 126.07178 * 180.18007 * 11 10 9 37 37 H 1.09000 * 109.46779 * 245.02259 * 13 12 11 38 38 H 1.08995 * 109.47349 * 5.01861 * 13 12 11 39 39 H 0.97000 * 119.99812 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 6 4.2492 -0.0014 -0.3396 6 6 3.5838 -1.3240 0.0487 7 1 3.8880 -1.5997 1.0584 8 7 3.9994 -2.3712 -0.8878 9 6 3.9837 -3.7131 -0.4892 10 6 3.6001 -4.1942 0.7730 11 6 3.7206 -5.5413 0.7577 12 7 4.1721 -5.9026 -0.4618 13 6 4.4483 -7.2709 -0.9064 14 6 3.6722 -7.5561 -2.1663 15 1 3.0364 -6.7944 -2.5929 16 6 3.7738 -8.7893 -2.7744 17 7 3.0961 -9.0384 -3.8736 18 14 4.8741 -10.1064 -2.0369 19 1 4.0921 -10.9225 -1.0737 20 1 5.3933 -10.9807 -3.1192 21 1 6.0116 -9.4633 -1.3315 22 7 4.3303 -4.7407 -1.2280 23 6 2.0901 -1.1759 0.0005 24 8 1.4146 -2.1824 -0.0404 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6270 1.9718 0.6697 29 1 2.1398 1.6998 -1.0090 30 1 3.6100 0.8726 1.5282 31 1 4.1401 2.0558 0.3065 32 1 5.3142 -0.0456 -0.1118 33 1 4.1092 0.1810 -1.4051 34 1 4.2855 -2.1348 -1.7840 35 1 3.2659 -3.5951 1.6072 36 1 3.4990 -6.2089 1.5772 37 1 5.5147 -7.3803 -1.1040 38 1 4.1491 -7.9732 -0.1285 39 1 3.1673 -9.9061 -4.3011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538706739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:55 Heat of formation + Delta-G solvation = 33.191696 kcal Electronic energy + Delta-G solvation = -21534.550869 eV Core-core repulsion = 18285.238668 eV Total energy + Delta-G solvation = -3249.312202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95332 -41.33860 -37.52102 -37.07716 -35.42221 -33.99833 -32.61284 -30.96051 -29.61306 -28.41909 -28.02050 -24.85128 -24.42615 -23.18537 -21.76734 -21.10262 -19.61666 -19.07514 -18.10926 -17.71147 -17.53496 -17.00796 -16.75202 -16.14080 -15.77521 -15.31071 -15.12032 -14.86865 -14.66977 -14.35161 -14.24489 -13.79258 -13.72349 -13.54397 -13.24094 -13.00965 -12.83650 -12.48418 -12.37118 -12.17139 -12.11822 -11.80787 -11.78206 -11.43888 -11.16555 -10.87158 -10.55822 -9.68371 -9.49603 -8.51879 -8.37497 -6.47778 1.27291 1.34138 1.38966 1.47569 1.50012 1.87731 2.03467 2.29104 2.34964 2.77609 2.94697 3.62119 3.70433 3.86025 3.99412 4.07271 4.22803 4.33548 4.44466 4.49962 4.61273 4.66341 4.71270 4.80080 4.88966 4.92146 4.92721 5.01699 5.09444 5.10859 5.25154 5.32803 5.51465 5.57027 6.01588 6.24023 6.50075 6.51191 6.60771 6.71265 7.15097 7.22699 7.34038 8.80467 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033651 B = 0.003681 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.860071 B = 7603.952583 C = 7862.637756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.607 5.607 3 C 0.102 3.898 4 C -0.123 4.123 5 C -0.122 4.122 6 C 0.165 3.835 7 H 0.112 0.888 8 N -0.704 5.704 9 C 0.317 3.683 10 C -0.309 4.309 11 C 0.062 3.938 12 N -0.357 5.357 13 C 0.244 3.756 14 C -0.547 4.547 15 H 0.017 0.983 16 C 0.010 3.990 17 N -0.946 5.946 18 Si 0.963 3.037 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.239 1.239 22 N -0.390 5.390 23 C 0.479 3.521 24 O -0.585 6.585 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.151 0.849 36 H 0.203 0.797 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 24.432 14.533 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C -0.019 4.019 4 C -0.161 4.161 5 C -0.161 4.161 6 C 0.055 3.945 7 H 0.130 0.870 8 N -0.346 5.346 9 C 0.060 3.940 10 C -0.341 4.341 11 C -0.086 4.086 12 N -0.138 5.138 13 C 0.123 3.877 14 C -0.585 4.585 15 H 0.035 0.965 16 C -0.188 4.188 17 N -0.585 5.585 18 Si 0.783 3.217 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.162 1.162 22 N -0.223 5.223 23 C 0.265 3.735 24 O -0.464 6.464 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.168 0.832 36 H 0.220 0.780 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.520 23.296 13.375 26.980 hybrid contribution -0.591 -0.632 -0.211 0.890 sum 1.929 22.664 13.164 26.281 Atomic orbital electron populations 1.21743 0.79685 1.03519 1.01802 1.47511 1.07762 1.06644 1.72081 1.21819 0.93956 0.82883 1.03236 1.21889 0.93827 0.99904 1.00518 1.21978 1.01702 0.90527 1.01855 1.20831 0.88367 0.89409 0.95871 0.87002 1.43299 1.75491 0.99245 1.16517 1.19497 0.95910 0.86338 0.92264 1.20947 1.20426 0.93879 0.98873 1.23024 0.98619 0.96835 0.90157 1.48324 1.50717 1.05890 1.08861 1.19735 0.96981 0.75125 0.95816 1.21279 1.27849 0.99523 1.09875 0.96472 1.26026 0.97049 1.00868 0.94874 1.70076 1.43365 1.24415 1.20672 0.85517 0.79458 0.77873 0.78877 1.17608 1.20366 1.16195 1.77322 1.33851 0.91076 1.20017 1.21613 0.92753 0.83046 0.76094 1.90771 1.66994 1.37985 1.50663 0.93449 0.93128 0.87490 0.87739 0.90637 0.89993 0.85790 0.88073 0.90464 0.76163 0.83177 0.77977 0.94006 0.90513 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.22 127.77 1.31 2.73 16 2 N -0.61 -11.96 3.20 -851.86 -2.73 -14.69 16 3 C 0.10 0.90 6.39 86.49 0.55 1.46 16 4 C -0.12 -0.78 6.02 30.68 0.18 -0.60 16 5 C -0.12 -1.55 5.50 30.73 0.17 -1.39 16 6 C 0.16 3.91 2.69 44.10 0.12 4.03 16 7 H 0.11 2.51 7.13 -2.39 -0.02 2.50 16 8 N -0.70 -23.42 5.15 -327.66 -1.69 -25.11 16 9 C 0.32 13.69 7.63 133.38 1.02 14.71 16 10 C -0.31 -12.16 9.33 22.11 0.21 -11.95 16 11 C 0.06 2.50 11.44 83.52 0.96 3.46 16 12 N -0.36 -17.69 3.67 -351.85 -1.29 -18.98 16 13 C 0.24 12.34 5.33 85.63 0.46 12.80 16 14 C -0.55 -34.31 9.79 25.60 0.25 -34.06 16 15 H 0.02 1.26 8.06 -2.91 -0.02 1.24 16 16 C 0.01 0.59 5.47 84.66 0.46 1.06 16 17 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 18 Si 0.96 43.16 27.47 68.60 1.88 45.05 16 19 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 22 N -0.39 -20.30 12.42 -54.55 -0.68 -20.98 16 23 C 0.48 13.69 7.19 87.74 0.63 14.32 16 24 O -0.59 -23.97 14.85 -3.04 -0.05 -24.02 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 1.26 7.20 -2.38 -0.02 1.24 16 27 H 0.11 1.09 7.86 -2.38 -0.02 1.07 16 28 H 0.10 0.39 7.92 -2.38 -0.02 0.37 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.49 8.12 -2.39 -0.02 0.47 16 31 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.00 8.10 -2.38 -0.02 0.99 16 34 H 0.40 12.76 8.71 -92.71 -0.81 11.96 16 35 H 0.15 5.06 7.44 -2.91 -0.02 5.04 16 36 H 0.20 6.13 8.06 -2.91 -0.02 6.11 16 37 H 0.04 2.06 7.20 -2.39 -0.02 2.05 16 38 H 0.08 3.36 7.50 -2.39 -0.02 3.34 16 39 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -91.76 322.64 2.26 -89.51 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.19 Total: 24.00 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.31 Total: 6.56 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -6.09 Total: -141.09 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -91.76 2.26 -89.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538706739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.699 kcal (2) G-P(sol) polarization free energy of solvation -91.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds