Wall clock time and date at job start Fri Apr 10 2020 13:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47478 * 2 1 4 4 C 1.35790 * 117.00378 * 179.97438 * 3 2 1 5 5 C 1.39398 * 120.05727 * 179.97438 * 4 3 2 6 6 C 1.38413 * 117.97951 * 180.30085 * 5 4 3 7 7 C 1.39554 * 117.94513 * 359.47272 * 6 5 4 8 8 N 1.39302 * 120.09353 * 180.23926 * 7 6 5 9 9 C 1.46896 * 111.00044 * 304.60476 * 8 7 6 10 10 C 1.53239 * 109.34355 * 172.74410 * 9 8 7 11 11 N 1.47080 * 108.52011 * 53.82581 * 10 9 8 12 12 C 1.36935 * 120.88357 * 128.79357 * 11 10 9 13 13 H 1.08005 * 119.99618 * 333.52899 * 12 11 10 14 14 C 1.38810 * 120.00270 * 153.52799 * 12 11 10 15 15 N 1.31617 * 119.99972 * 159.47195 * 14 12 11 16 16 Si 1.86803 * 119.99782 * 339.46781 * 14 12 11 17 17 H 1.48504 * 109.46721 * 91.95644 * 16 14 12 18 18 H 1.48498 * 109.47039 * 211.95534 * 16 14 12 19 19 H 1.48493 * 109.47333 * 331.95774 * 16 14 12 20 20 C 1.47083 * 118.23810 * 308.82322 * 11 10 9 21 21 C 1.46899 * 111.00049 * 180.29863 * 8 7 6 22 22 N 1.32305 * 119.81180 * 0.53945 * 7 6 5 23 23 N 1.28348 * 122.16064 * 359.72511 * 22 7 6 24 24 H 1.09004 * 109.46735 * 59.99691 * 1 2 3 25 25 H 1.08997 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47030 * 300.00060 * 1 2 3 27 27 H 1.08998 * 109.47327 * 239.99751 * 2 1 3 28 28 H 1.09003 * 109.47256 * 120.00255 * 2 1 3 29 29 H 1.07998 * 121.00421 * 0.03196 * 5 4 3 30 30 H 1.07998 * 121.02545 * 179.70239 * 6 5 4 31 31 H 1.08999 * 109.49138 * 292.70376 * 9 8 7 32 32 H 1.09003 * 109.49788 * 52.78429 * 9 8 7 33 33 H 1.09002 * 109.63140 * 294.12300 * 10 9 8 34 34 H 1.08998 * 109.63178 * 173.53468 * 10 9 8 35 35 H 0.96999 * 119.99881 * 179.97438 * 15 14 12 36 36 H 1.09009 * 109.62415 * 291.47037 * 20 11 10 37 37 H 1.08997 * 109.62858 * 170.89144 * 20 11 10 38 38 H 1.09000 * 109.49259 * 307.21107 * 21 8 7 39 39 H 1.09001 * 109.49059 * 67.29527 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3526 1.5252 0.0005 5 6 3.8867 2.8128 0.0000 6 6 5.2646 2.9443 -0.0058 7 6 6.0327 1.7792 0.0005 8 7 7.4234 1.8595 0.0001 9 6 7.9041 2.6613 -1.1331 10 6 9.4152 2.8770 -0.9975 11 7 10.0625 1.5651 -0.8448 12 6 11.1193 1.2062 -1.6381 13 1 11.2289 1.6408 -2.6208 14 6 12.0498 0.2839 -1.1794 15 7 12.8114 -0.3639 -2.0354 16 14 12.2210 -0.0378 0.6527 17 1 11.3399 -1.1683 1.0412 18 1 13.6319 -0.3797 0.9655 19 1 11.8274 1.1787 1.4078 20 6 9.5442 0.6487 0.1823 21 6 8.0281 0.5207 0.0002 22 7 5.4364 0.5982 0.0010 23 7 4.1586 0.4781 0.0009 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.2448 3.6813 -0.0003 30 1 5.7307 3.9185 -0.0113 31 1 7.6938 2.1365 -2.0650 32 1 7.3978 3.6266 -1.1365 33 1 9.6202 3.4907 -0.1203 34 1 9.7961 3.3714 -1.8910 35 1 13.4619 -1.0081 -1.7148 36 1 9.7616 1.0483 1.1729 37 1 10.0105 -0.3299 0.0687 38 1 7.6117 -0.0663 0.8188 39 1 7.8160 0.0258 -0.9475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595890411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:47 Heat of formation + Delta-G solvation = 69.762357 kcal Electronic energy + Delta-G solvation = -21615.711803 eV Core-core repulsion = 18367.985425 eV Total energy + Delta-G solvation = -3247.726379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34783 -39.19560 -37.93499 -34.90843 -33.35978 -32.14774 -31.55651 -30.60802 -29.87873 -26.74800 -25.33412 -23.77422 -23.41832 -22.46490 -22.18170 -19.75796 -18.79860 -17.62961 -17.43644 -16.60616 -16.35976 -15.12590 -14.99506 -14.69872 -14.47737 -14.27534 -14.06119 -13.96396 -13.69958 -13.31798 -12.87679 -12.73967 -12.59087 -12.12000 -11.91618 -11.87265 -11.56915 -11.15645 -11.06959 -10.80385 -10.51006 -10.46866 -10.15592 -9.94027 -9.75697 -9.51652 -9.39309 -8.68131 -8.02601 -7.05030 -5.97412 -3.34408 0.71786 1.03499 2.72676 3.32656 3.39012 3.48885 3.52039 3.71038 4.18299 4.42184 4.51341 4.66860 4.73657 4.78750 4.83647 4.89676 5.10160 5.18099 5.26751 5.43618 5.49323 5.51346 5.54149 5.61341 5.73613 5.78801 5.84236 5.87309 6.00328 6.15069 6.29167 6.49477 6.55140 6.76978 6.92242 7.07308 7.20355 7.88299 8.28723 8.73557 8.87298 9.67575 10.04422 11.18286 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035630 B = 0.003812 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.657437 B = 7344.336902 C = 7693.777383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.306 6.306 4 C 0.230 3.770 5 C -0.113 4.113 6 C -0.100 4.100 7 C 0.237 3.763 8 N -0.461 5.461 9 C 0.043 3.957 10 C 0.152 3.848 11 N -0.608 5.608 12 C -0.263 4.263 13 H 0.087 0.913 14 C 0.024 3.976 15 N -0.907 5.907 16 Si 0.882 3.118 17 H -0.286 1.286 18 H -0.303 1.303 19 H -0.269 1.269 20 C 0.126 3.874 21 C 0.050 3.950 22 N -0.248 5.248 23 N -0.280 5.280 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.263 0.737 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.372 6.091 4.493 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.212 6.212 4 C 0.042 3.958 5 C -0.143 4.143 6 C -0.131 4.131 7 C -0.004 4.004 8 N -0.180 5.180 9 C -0.084 4.084 10 C 0.025 3.975 11 N -0.333 5.333 12 C -0.391 4.391 13 H 0.105 0.895 14 C -0.175 4.175 15 N -0.550 5.550 16 Si 0.712 3.288 17 H -0.214 1.214 18 H -0.231 1.231 19 H -0.194 1.194 20 C 0.000 4.000 21 C -0.078 4.078 22 N -0.097 5.097 23 N -0.135 5.135 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.172 0.828 30 H 0.176 0.824 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.114 4.749 4.855 22.179 hybrid contribution -0.154 0.698 0.499 0.871 sum -21.268 5.447 5.353 22.598 Atomic orbital electron populations 1.21810 0.92884 1.02974 1.03226 1.22676 0.94860 0.80926 1.02839 1.86201 1.15863 1.30702 1.88391 1.21273 0.85689 0.92069 0.96807 1.21392 0.95101 0.96420 1.01391 1.21899 0.92458 1.00016 0.98749 1.21675 0.92418 0.90769 0.95527 1.59158 0.99516 1.18075 1.41282 1.22934 0.99530 0.96196 0.89767 1.21032 0.88071 0.88255 1.00140 1.44443 1.36104 1.11802 1.40905 1.18902 1.00133 1.23695 0.96390 0.89533 1.25255 0.96643 0.98130 0.97462 1.69831 1.25351 1.26304 1.33483 0.86974 0.75851 0.78273 0.87677 1.21393 1.23074 1.19418 1.21555 0.90403 0.95612 0.92417 1.22674 0.96599 0.86338 1.02167 1.73005 1.01329 1.22136 1.13207 1.72800 0.98720 1.27070 1.14909 0.91655 0.90195 0.91683 0.91414 0.91440 0.82770 0.82431 0.93229 0.90586 0.94714 0.90775 0.92671 0.94697 0.90039 0.90131 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.61 6.05 37.16 0.22 0.84 16 3 O -0.31 -3.64 10.13 -19.08 -0.19 -3.84 16 4 C 0.23 3.08 7.57 -16.99 -0.13 2.95 16 5 C -0.11 -1.26 10.15 -39.09 -0.40 -1.65 16 6 C -0.10 -1.19 9.27 -39.03 -0.36 -1.55 16 7 C 0.24 3.70 6.49 -154.65 -1.00 2.69 16 8 N -0.46 -7.82 4.67 -172.70 -0.81 -8.62 16 9 C 0.04 0.68 5.42 -3.70 -0.02 0.66 16 10 C 0.15 2.83 6.69 -3.60 -0.02 2.80 16 11 N -0.61 -14.27 2.82 -172.01 -0.48 -14.76 16 12 C -0.26 -7.25 10.08 -15.06 -0.15 -7.40 16 13 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 14 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 15 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 16 Si 0.88 22.28 24.31 -169.99 -4.13 18.15 16 17 H -0.29 -6.99 6.58 56.52 0.37 -6.61 16 18 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 19 H -0.27 -6.69 6.61 56.52 0.37 -6.32 16 20 C 0.13 2.78 4.35 -3.60 -0.02 2.77 16 21 C 0.05 0.97 4.84 -3.70 -0.02 0.95 16 22 N -0.25 -4.28 9.85 31.27 0.31 -3.97 16 23 N -0.28 -4.44 10.39 30.51 0.32 -4.13 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.16 1.42 7.19 -52.49 -0.38 1.04 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.92 6.67 -51.93 -0.35 0.57 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.33 7.95 -51.93 -0.41 0.91 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.04 0.77 6.94 -51.92 -0.36 0.41 16 37 H 0.08 1.96 4.60 -51.93 -0.24 1.72 16 38 H 0.08 1.49 7.66 -51.93 -0.40 1.09 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -32.22 313.38 -6.65 -38.86 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.55 Total: -2.53 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.60 Total: 3.01 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.11 Total: -58.38 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -0.19 Total: -3.84 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.13 Total: 18.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.22 -6.65 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595890411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.626 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds