Wall clock time and date at job start Fri Apr 10 2020 14:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46853 * 110.99852 * 2 1 4 4 C 1.53035 * 109.51934 * 185.84189 * 3 2 1 5 5 C 1.53118 * 109.27807 * 300.81519 * 4 3 2 6 6 C 1.53123 * 109.16111 * 57.65764 * 5 4 3 7 7 C 1.46845 * 111.00138 * 124.20704 * 2 1 3 8 8 H 1.09005 * 109.46190 * 294.16657 * 7 2 1 9 9 C 1.50702 * 109.46052 * 54.14357 * 7 2 1 10 10 O 1.21303 * 120.00249 * 20.00299 * 9 7 2 11 11 N 1.34777 * 119.99928 * 199.72210 * 9 7 2 12 12 C 1.40598 * 120.00180 * 180.27688 * 11 9 7 13 13 C 1.40649 * 126.07769 * 0.02751 * 12 11 9 14 14 N 1.30906 * 108.38266 * 180.02562 * 13 12 11 15 15 N 1.40068 * 108.41181 * 359.97438 * 14 13 12 16 16 C 1.37323 * 126.07171 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99660 * 179.97438 * 16 15 14 18 18 C 1.38981 * 120.00049 * 359.97400 * 16 15 14 19 19 N 1.31296 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00020 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46807 * 90.00623 * 20 18 16 22 22 H 1.48506 * 109.47476 * 210.00360 * 20 18 16 23 23 H 1.48497 * 109.47229 * 330.00813 * 20 18 16 24 24 C 1.35679 * 126.08489 * 179.72148 * 12 11 9 25 25 H 1.09001 * 109.47185 * 295.79322 * 1 2 3 26 26 H 1.08996 * 109.47263 * 55.79244 * 1 2 3 27 27 H 1.09005 * 109.47219 * 175.79434 * 1 2 3 28 28 H 1.09006 * 109.45902 * 305.85241 * 3 2 1 29 29 H 1.08994 * 109.46301 * 65.82419 * 3 2 1 30 30 H 1.08998 * 109.50615 * 60.75831 * 4 3 2 31 31 H 1.08998 * 109.50049 * 180.87791 * 4 3 2 32 32 H 1.09001 * 109.52723 * 177.56288 * 5 4 3 33 33 H 1.09002 * 109.52544 * 297.68882 * 5 4 3 34 34 H 1.09002 * 109.50256 * 182.39952 * 6 5 4 35 35 H 1.09007 * 109.50050 * 62.28675 * 6 5 4 36 36 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 37 37 H 1.07995 * 125.80679 * 359.96083 * 13 12 11 38 38 H 0.97005 * 119.99896 * 179.97438 * 19 18 16 39 39 H 1.08006 * 126.24460 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.5181 -0.8714 1.0209 7 6 1.9953 -0.7707 1.1338 8 1 1.7326 -0.2706 2.0660 9 6 1.3982 -2.1543 1.1206 10 8 0.9164 -2.5974 0.0994 11 7 1.4046 -2.9017 2.2422 12 6 0.8528 -4.1948 2.2285 13 6 0.2644 -4.8325 1.1216 14 7 -0.1334 -6.0227 1.4942 15 7 0.1844 -6.1917 2.8479 16 6 -0.0710 -7.3085 3.6051 17 1 0.2183 -7.3333 4.6453 18 6 -0.7017 -8.4068 3.0327 19 7 -1.0528 -8.3768 1.7680 20 14 -1.0484 -9.9262 4.0626 21 1 -2.3863 -9.8008 4.6949 22 1 -1.0227 -11.1300 3.1932 23 1 -0.0122 -10.0558 5.1183 24 6 0.7984 -5.0516 3.2791 25 1 -0.3633 0.4472 0.9253 26 1 -0.3633 0.5777 -0.8498 27 1 -0.3634 -1.0249 -0.0754 28 1 1.5634 1.9257 -0.8331 29 1 1.7325 1.8609 0.9375 30 1 3.7813 0.8567 -1.0906 31 1 3.9098 2.3512 -0.1311 32 1 5.1997 0.4714 0.8905 33 1 3.8896 1.0362 1.9559 34 1 3.9099 -1.4302 1.8708 35 1 3.7814 -1.3836 0.0954 36 1 1.7899 -2.5475 3.0589 37 1 0.1578 -4.4115 0.1328 38 1 -1.4927 -9.1435 1.3684 39 1 1.1708 -4.8646 4.2756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737820549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:27 Heat of formation + Delta-G solvation = 53.382467 kcal Electronic energy + Delta-G solvation = -21679.792517 eV Core-core repulsion = 18431.355853 eV Total energy + Delta-G solvation = -3248.436664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.27793 -39.29013 -37.56101 -34.28063 -33.48294 -33.07645 -31.26885 -30.15608 -27.81025 -26.73578 -25.00686 -23.74740 -22.90398 -21.04333 -20.45499 -19.56647 -19.35792 -17.52689 -16.67650 -15.70743 -15.47019 -15.31024 -14.91645 -14.68454 -14.36910 -14.11886 -13.84635 -13.44651 -13.17924 -12.97612 -12.84128 -12.65190 -12.11130 -11.67893 -11.64638 -11.46609 -11.34220 -11.24344 -10.99133 -10.87639 -10.79243 -10.53926 -10.51907 -10.02937 -9.13030 -8.98470 -8.76342 -8.27513 -8.02938 -6.66322 -6.53425 -4.20392 2.85426 3.05218 3.06006 3.11279 3.44630 3.70048 3.85094 4.04921 4.44141 4.64849 4.68625 4.79558 4.88047 5.03859 5.07231 5.12855 5.29160 5.37209 5.45935 5.50983 5.57422 5.65813 5.77432 5.81941 5.96571 6.01110 6.22319 6.25948 6.27633 6.48576 6.87423 6.96419 7.03555 7.09285 7.18832 7.28284 7.88656 8.23257 8.32235 8.67450 8.92628 9.40707 9.70240 10.42618 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047721 B = 0.003500 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.602514 B = 7997.311436 C = 8301.977445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.518 5.518 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.076 3.924 8 H 0.055 0.945 9 C 0.502 3.498 10 O -0.516 6.516 11 N -0.626 5.626 12 C -0.058 4.058 13 C -0.033 4.033 14 N -0.260 5.260 15 N -0.143 5.143 16 C -0.324 4.324 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.085 4.085 25 H 0.018 0.982 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.176 0.824 38 H 0.274 0.726 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 16.102 1.762 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.243 5.243 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.037 4.037 8 H 0.073 0.927 9 C 0.287 3.713 10 O -0.392 6.392 11 N -0.269 5.269 12 C -0.164 4.164 13 C -0.209 4.209 14 N -0.091 5.091 15 N 0.089 4.911 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.236 4.236 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.193 0.807 38 H 0.085 0.915 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.424 14.323 0.034 15.698 hybrid contribution 0.170 0.756 2.029 2.172 sum 6.594 15.078 2.064 16.586 Atomic orbital electron populations 1.22606 0.86420 1.04757 0.99550 1.61613 1.08406 1.12497 1.41831 1.22132 0.95622 0.89015 1.00397 1.21615 0.94495 0.99964 0.99601 1.21579 1.00092 0.95410 0.98568 1.21555 0.91823 0.97634 1.03581 1.21527 0.96251 0.92598 0.93285 0.92684 1.20130 0.80938 0.86670 0.83581 1.90569 1.45187 1.71803 1.31634 1.42548 1.58245 1.14058 1.12009 1.17279 1.15615 0.87289 0.96194 1.24110 1.04125 0.93340 0.99306 1.78249 1.24119 1.16079 0.90701 1.44537 1.31351 1.08564 1.06664 1.19857 1.40624 0.90664 0.94469 0.86681 1.25633 0.95701 0.99664 0.96098 1.70221 1.29095 1.29724 1.10635 0.85836 0.79344 0.79662 0.79339 1.19623 1.20094 1.18836 1.21252 1.13289 0.90469 0.98557 0.96389 0.91515 0.88713 0.90510 0.95135 0.90822 0.91579 0.91390 0.92168 0.90937 0.90189 0.77261 0.80731 0.91493 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.10 60.06 0.55 0.74 16 2 N -0.52 -7.01 4.51 -236.32 -1.07 -8.07 16 3 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 4 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 5 C -0.12 -1.05 6.00 -26.61 -0.16 -1.21 16 6 C -0.11 -1.23 5.36 -26.65 -0.14 -1.37 16 7 C 0.08 1.01 2.24 -68.88 -0.15 0.86 16 8 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 9 C 0.50 8.93 6.24 -10.98 -0.07 8.86 16 10 O -0.52 -11.22 11.68 5.54 0.06 -11.15 16 11 N -0.63 -11.23 5.47 -10.00 -0.05 -11.29 16 12 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 13 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 14 N -0.26 -7.66 10.40 30.80 0.32 -7.34 16 15 N -0.14 -3.97 3.74 -11.41 -0.04 -4.02 16 16 C -0.32 -8.65 10.25 -14.82 -0.15 -8.80 16 17 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 18 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 19 N -0.77 -21.73 11.81 55.49 0.66 -21.08 16 20 Si 0.93 19.06 29.55 -169.99 -5.02 14.03 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 24 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.09 1.62 5.62 -51.93 -0.29 1.33 16 28 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.39 5.50 8.83 -40.82 -0.36 5.14 16 37 H 0.18 4.65 5.92 -52.49 -0.31 4.34 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.14 2.85 8.06 -52.48 -0.42 2.42 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -33.15 317.97 -7.29 -40.45 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.58 Total: 9.37 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.36 Total: -5.69 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.19 Total: -51.80 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.06 Total: -11.15 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.15 -7.29 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737820549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.829 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds