Wall clock time and date at job start Fri Apr 10 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46852 * 110.99733 * 2 1 4 4 C 1.53040 * 109.52005 * 185.84055 * 3 2 1 5 5 C 1.53116 * 109.27707 * 300.81773 * 4 3 2 6 6 C 1.50708 * 109.51900 * 177.56197 * 5 4 3 7 7 O 1.21296 * 119.99942 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99829 * 180.02562 * 6 5 4 9 9 C 1.40585 * 119.99909 * 179.97438 * 8 6 5 10 10 C 1.40645 * 126.08375 * 0.02562 * 9 8 6 11 11 N 1.30914 * 108.39140 * 179.71485 * 10 9 8 12 12 N 1.40076 * 108.40071 * 0.44717 * 11 10 9 13 13 C 1.37323 * 126.06590 * 179.81421 * 12 11 10 14 14 H 1.08002 * 119.99553 * 179.68479 * 13 12 11 15 15 C 1.38981 * 119.99998 * 359.96616 * 13 12 11 16 16 N 1.31294 * 120.00080 * 359.72332 * 15 13 12 17 17 Si 1.86801 * 119.99841 * 179.72367 * 15 13 12 18 18 H 1.48504 * 109.47266 * 60.00169 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99575 * 17 15 13 21 21 C 1.35687 * 126.08190 * 180.02562 * 9 8 6 22 22 C 1.53113 * 109.16041 * 57.66049 * 5 4 3 23 23 C 1.46845 * 111.00305 * 124.21123 * 2 1 3 24 24 H 1.09006 * 109.47581 * 60.00472 * 1 2 3 25 25 H 1.09004 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47223 * 299.99692 * 1 2 3 27 27 H 1.08999 * 109.45897 * 65.82358 * 3 2 1 28 28 H 1.09000 * 109.45023 * 305.85065 * 3 2 1 29 29 H 1.09001 * 109.49760 * 180.88126 * 4 3 2 30 30 H 1.08997 * 109.50169 * 60.76318 * 4 3 2 31 31 H 1.08996 * 109.52354 * 297.68690 * 5 4 3 32 32 H 0.97006 * 119.99896 * 0.02562 * 8 6 5 33 33 H 1.07999 * 125.80591 * 359.97438 * 10 9 8 34 34 H 0.97009 * 120.00129 * 180.02562 * 16 15 13 35 35 H 1.07999 * 126.24701 * 0.03361 * 21 9 8 36 36 H 1.08999 * 109.50671 * 62.28425 * 22 5 4 37 37 H 1.09006 * 109.50519 * 182.40121 * 22 5 4 38 38 H 1.08998 * 109.45863 * 294.17746 * 23 2 1 39 39 H 1.08999 * 109.46425 * 54.14409 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5371 1.0143 6 6 5.6133 0.4465 0.8430 7 8 6.1469 0.9683 -0.1131 8 7 6.3570 -0.2143 1.7523 9 6 7.7511 -0.2993 1.5923 10 6 8.4991 0.2549 0.5380 11 7 9.7623 -0.0267 0.7353 12 7 9.8693 -0.7776 1.9129 13 6 11.0312 -1.2678 2.4565 14 1 11.0006 -1.8333 3.3761 15 6 12.2471 -1.0311 1.8263 16 7 12.2843 -0.3435 0.7084 17 14 13.8285 -1.6913 2.5698 18 1 13.7531 -3.1717 2.6595 19 1 14.9776 -1.3058 1.7117 20 1 14.0121 -1.1217 3.9289 21 6 8.6143 -0.9305 2.4274 22 6 3.5182 -0.8713 1.0208 23 6 1.9953 -0.7708 1.1337 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7323 1.8608 0.9376 28 1 1.5632 1.9256 -0.8331 29 1 3.9098 2.3513 -0.1310 30 1 3.7812 0.8568 -1.0906 31 1 3.8896 1.0362 1.9558 32 1 5.9301 -0.6319 2.5168 33 1 8.0999 0.8206 -0.2908 34 1 13.1330 -0.1786 0.2683 35 1 8.3556 -1.4582 3.3335 36 1 3.7814 -1.3835 0.0953 37 1 3.9100 -1.4302 1.8707 38 1 1.7325 -0.2708 2.0659 39 1 1.5635 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746184739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:23 Heat of formation + Delta-G solvation = 21.244088 kcal Electronic energy + Delta-G solvation = -21305.432595 eV Core-core repulsion = 18055.602306 eV Total energy + Delta-G solvation = -3249.830289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78216 -40.75118 -39.10725 -35.92826 -35.04389 -34.41185 -32.22166 -31.78543 -29.77164 -28.03572 -26.67206 -24.44025 -24.05607 -22.85409 -21.95617 -21.18785 -20.55749 -19.29104 -18.05378 -17.38773 -16.91006 -16.64846 -16.11660 -15.95221 -15.73457 -15.44157 -15.24729 -14.87624 -14.83303 -14.33556 -13.99808 -13.47694 -13.35427 -13.31141 -13.22598 -12.87065 -12.85862 -12.50653 -12.17636 -12.13637 -12.10100 -11.80302 -11.63396 -11.38754 -10.98387 -10.82073 -10.50567 -10.09424 -9.20991 -8.50891 -8.46179 -6.23603 1.24233 1.39833 1.55846 1.56548 1.88368 2.07424 2.33891 2.53961 2.93123 3.04437 3.09737 3.66387 3.80833 3.90621 4.19952 4.29807 4.39720 4.45249 4.47705 4.60173 4.61398 4.62234 4.76832 4.80911 4.92919 4.97581 5.00754 5.07615 5.09110 5.15965 5.23083 5.30267 5.38831 5.52288 5.96676 6.17092 6.20200 6.33211 6.74781 6.79915 7.43641 7.49262 7.69575 8.53178 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.058531 B = 0.003141 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.263793 B = 8911.683617 C = 9238.723015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.566 5.566 3 C 0.064 3.936 4 C -0.095 4.095 5 C -0.089 4.089 6 C 0.500 3.500 7 O -0.581 6.581 8 N -0.616 5.616 9 C -0.044 4.044 10 C -0.063 4.063 11 N -0.311 5.311 12 N -0.169 5.169 13 C -0.355 4.355 14 H 0.142 0.858 15 C -0.008 4.008 16 N -0.826 5.826 17 Si 1.020 2.980 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.253 1.253 21 C -0.082 4.082 22 C -0.105 4.105 23 C 0.061 3.939 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.419 0.581 33 H 0.165 0.835 34 H 0.276 0.724 35 H 0.189 0.811 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.626 -1.826 6.110 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C -0.064 4.064 4 C -0.134 4.134 5 C -0.111 4.111 6 C 0.288 3.712 7 O -0.460 6.460 8 N -0.261 5.261 9 C -0.150 4.150 10 C -0.238 4.238 11 N -0.143 5.143 12 N 0.062 4.938 13 C -0.486 4.486 14 H 0.159 0.841 15 C -0.219 4.219 16 N -0.454 5.454 17 Si 0.839 3.161 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.177 1.177 21 C -0.232 4.232 22 C -0.143 4.143 23 C -0.066 4.066 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.256 0.744 33 H 0.182 0.818 34 H 0.086 0.914 35 H 0.206 0.794 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.799 -1.474 4.400 19.363 hybrid contribution -0.292 0.155 1.077 1.127 sum -19.091 -1.319 5.476 19.905 Atomic orbital electron populations 1.22373 0.85841 1.02750 1.01150 1.61894 1.08900 1.14000 1.44340 1.22046 0.93501 0.89336 1.01481 1.21352 0.94903 0.99774 0.97327 1.21339 0.87618 0.99834 1.02280 1.21391 0.90547 0.77632 0.81614 1.90576 1.74465 1.48239 1.32733 1.42525 1.03110 1.53585 1.26864 1.17387 0.84517 1.12815 1.00264 1.24145 0.91050 1.06914 1.01731 1.78147 1.17359 1.16081 1.02758 1.44844 1.05227 1.29939 1.13791 1.20591 0.82252 1.35476 1.10270 0.84103 1.26908 1.03987 0.95499 0.95549 1.70406 1.28237 1.31336 1.15467 0.84642 0.73836 0.79263 0.78377 1.17660 1.20380 1.17659 1.22013 0.84557 1.12614 1.04002 1.21607 0.95735 0.93776 1.03198 1.22090 0.93604 0.99195 0.91744 0.91122 0.90625 0.94872 0.93450 0.89906 0.91608 0.92883 0.86332 0.74398 0.81848 0.91435 0.79412 0.92617 0.88864 0.93130 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.59 127.69 1.22 1.55 16 2 N -0.57 -9.75 4.91 -922.58 -4.53 -14.28 16 3 C 0.06 1.13 5.46 86.33 0.47 1.60 16 4 C -0.10 -2.28 4.68 30.65 0.14 -2.14 16 5 C -0.09 -2.04 2.59 -11.46 -0.03 -2.07 16 6 C 0.50 17.31 7.13 87.66 0.62 17.93 16 7 O -0.58 -26.13 13.13 -3.08 -0.04 -26.18 16 8 N -0.62 -21.16 5.37 -303.93 -1.63 -22.79 16 9 C -0.04 -2.04 6.90 37.73 0.26 -1.78 16 10 C -0.06 -3.56 10.85 85.42 0.93 -2.63 16 11 N -0.31 -19.25 10.40 -56.47 -0.59 -19.84 16 12 N -0.17 -9.54 3.74 -190.01 -0.71 -10.25 16 13 C -0.35 -19.02 10.25 84.01 0.86 -18.16 16 14 H 0.14 6.49 7.83 -2.91 -0.02 6.46 16 15 C -0.01 -0.42 5.50 84.95 0.47 0.04 16 16 N -0.83 -48.61 11.81 21.66 0.26 -48.35 16 17 Si 1.02 38.97 29.55 68.60 2.03 41.00 16 18 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 19 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 21 C -0.08 -3.82 11.49 83.38 0.96 -2.86 16 22 C -0.11 -1.97 5.26 30.64 0.16 -1.81 16 23 C 0.06 0.90 5.46 86.33 0.47 1.37 16 24 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.80 8.09 -2.39 -0.02 0.79 16 26 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.56 8.04 -2.39 -0.02 1.54 16 31 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.42 10.25 8.31 -92.70 -0.77 9.48 16 33 H 0.16 9.38 5.92 -2.91 -0.02 9.36 16 34 H 0.28 14.96 8.31 -92.70 -0.77 14.19 16 35 H 0.19 6.84 8.06 -2.91 -0.02 6.81 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.36 7.66 -2.38 -0.02 1.34 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 Total: -1.00 -77.83 320.82 1.61 -76.22 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.29 Total: 33.42 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 6.54 Total: -8.95 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -7.20 Total: -115.51 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.04 Total: -26.18 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -77.83 1.61 -76.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746184739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.465 kcal (2) G-P(sol) polarization free energy of solvation -77.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds