Wall clock time and date at job start Fri Apr 10 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35732 * 117.00167 * 2 1 4 4 N 1.32268 * 120.11980 * 0.02562 * 3 2 1 5 5 C 1.32412 * 120.02573 * 179.97438 * 4 3 2 6 6 C 1.37995 * 120.25875 * 0.02562 * 5 4 3 7 7 N 1.32353 * 120.24296 * 359.97438 * 6 5 4 8 8 C 1.32521 * 119.97107 * 359.97438 * 7 6 5 9 9 N 1.39141 * 120.13334 * 180.02562 * 8 7 6 10 10 N 1.40108 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.28010 * 120.00295 * 179.97438 * 10 9 8 12 12 C 1.50711 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00248 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.46921 * 115.00135 * 13 11 10 15 15 C 1.53000 * 109.46717 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99959 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00139 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47242 * 59.99712 * 20 18 16 22 22 H 1.48499 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46781 * 299.99633 * 20 18 16 24 24 H 1.08996 * 109.47059 * 299.99818 * 1 2 3 25 25 H 1.09000 * 109.47317 * 59.99575 * 1 2 3 26 26 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.87357 * 179.97438 * 5 4 3 28 28 H 1.08007 * 119.87968 * 179.70296 * 6 5 4 29 29 H 0.96996 * 120.00755 * 180.02562 * 9 8 7 30 30 H 1.09001 * 109.46897 * 89.99980 * 12 11 10 31 31 H 1.08998 * 109.46464 * 209.99726 * 12 11 10 32 32 H 1.08992 * 109.46640 * 329.99950 * 12 11 10 33 33 H 1.09002 * 109.46773 * 234.99848 * 13 11 10 34 34 H 1.09003 * 109.47133 * 354.99928 * 13 11 10 35 35 H 1.08997 * 109.47484 * 299.99802 * 14 13 11 36 36 H 1.08999 * 109.47170 * 60.00670 * 14 13 11 37 37 H 1.09005 * 109.47256 * 299.99576 * 15 14 13 38 38 H 1.08993 * 109.47532 * 60.00298 * 15 14 13 39 39 H 0.97003 * 120.00362 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3272 2.3202 0.0005 5 6 1.9303 3.4990 0.0010 6 6 3.3081 3.5751 0.0005 7 7 4.0368 2.4702 0.0000 8 6 3.4430 1.2855 0.0005 9 7 4.2057 0.1218 0.0005 10 7 5.6046 0.2012 0.0005 11 6 6.3064 -0.8694 0.0010 12 6 5.6280 -2.2152 0.0010 13 6 7.8110 -0.7841 0.0004 14 6 8.3551 -1.3630 1.3080 15 6 9.8826 -1.2757 1.3076 16 6 10.4186 -1.8465 2.5952 17 1 9.7379 -2.2324 3.3395 18 6 11.7781 -1.8750 2.8235 19 7 12.6070 -1.4046 1.9174 20 14 12.4425 -2.5832 4.4193 21 1 12.0285 -4.0041 4.5406 22 1 13.9251 -2.4984 4.4191 23 1 11.9023 -1.8104 5.5665 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.3416 4.4044 0.0010 28 1 3.7937 4.5399 -0.0039 29 1 3.7692 -0.7443 0.0005 30 1 5.4649 -2.5398 -1.0267 31 1 6.2590 -2.9400 0.5152 32 1 4.6696 -2.1388 0.5144 33 1 8.2068 -1.3526 -0.8412 34 1 8.1158 0.2586 -0.0900 35 1 7.9593 -0.7945 2.1495 36 1 8.0504 -2.4056 1.3983 37 1 10.2788 -1.8440 0.4660 38 1 10.1870 -0.2330 1.2175 39 1 13.5635 -1.4243 2.0781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841632894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:42 Heat of formation + Delta-G solvation = 20.633764 kcal Electronic energy + Delta-G solvation = -20444.431200 eV Core-core repulsion = 17194.574446 eV Total energy + Delta-G solvation = -3249.856754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27146 -39.39590 -39.25696 -36.67941 -35.38993 -34.34147 -33.20138 -30.92266 -29.17841 -28.82310 -28.45248 -25.71488 -24.77748 -24.32397 -22.13877 -20.64544 -19.44937 -19.25213 -18.39310 -18.28766 -17.34606 -17.22693 -16.50688 -15.97245 -15.73715 -15.58954 -15.44327 -15.03185 -14.89326 -14.37940 -14.07936 -13.68796 -13.37337 -13.21891 -12.95537 -12.87911 -12.62664 -12.56041 -12.46990 -12.43438 -12.39407 -11.83693 -11.47574 -11.36810 -11.17812 -10.96444 -10.50641 -10.43053 -10.25374 -8.60514 -8.16167 -6.26786 -0.11835 0.11397 1.25475 1.41730 1.43336 1.44824 1.52655 1.88304 2.43859 2.75624 3.10772 3.16951 3.26321 3.51920 3.68500 4.09037 4.20010 4.25841 4.39411 4.41404 4.42751 4.46814 4.59953 4.66138 4.72882 4.78462 4.97482 5.09915 5.15576 5.24409 5.32452 5.43702 5.57149 5.63690 5.82184 5.91435 6.08240 6.29583 6.34917 6.73787 6.90485 7.31925 7.42007 8.95332 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.002774 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.194964 B =10089.933740 C =10446.448630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.216 3.784 4 N -0.470 5.470 5 C 0.033 3.967 6 C 0.054 3.946 7 N -0.476 5.476 8 C 0.346 3.654 9 N -0.563 5.563 10 N -0.269 5.269 11 C 0.104 3.896 12 C -0.155 4.155 13 C -0.053 4.053 14 C -0.086 4.086 15 C 0.024 3.976 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.270 1.270 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.124 0.876 27 H 0.213 0.787 28 H 0.204 0.796 29 H 0.407 0.593 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.002 0.998 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.166 4.428 -5.821 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C 0.026 3.974 4 N -0.199 5.199 5 C -0.125 4.125 6 C -0.104 4.104 7 N -0.199 5.199 8 C 0.106 3.894 9 N -0.291 5.291 10 N -0.074 5.074 11 C -0.090 4.090 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.125 4.125 15 C -0.014 4.014 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.787 3.213 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.195 1.195 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.142 0.858 27 H 0.229 0.771 28 H 0.221 0.779 29 H 0.251 0.749 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.893 5.212 -5.868 27.056 hybrid contribution 0.237 -1.151 0.715 1.375 sum -25.656 4.061 -5.153 26.482 Atomic orbital electron populations 1.23109 0.75156 1.04943 1.02453 1.86158 1.24885 1.23080 1.88579 1.20048 0.87786 0.87280 1.02245 1.68054 1.38877 0.98593 1.14403 1.23843 0.93800 0.95502 0.99352 1.24065 0.92619 0.97394 0.96326 1.68190 1.39404 0.97353 1.14911 1.18246 0.84981 0.87847 0.98309 1.45210 1.00946 1.05487 1.77466 1.74422 0.89745 1.27726 1.15493 1.25246 0.96856 0.92118 0.94791 1.21386 1.00846 0.94454 1.04752 1.20422 0.86739 1.02480 0.99672 1.21361 0.95900 1.00246 0.95015 1.19014 0.91735 0.95005 0.95610 1.21697 0.92275 1.40143 1.04017 0.92236 1.25956 0.97614 0.95890 1.00373 1.70086 1.03167 1.47674 1.36430 0.85548 0.76999 0.79312 0.79476 1.18935 1.20903 1.19524 0.92293 0.92132 0.85764 0.77072 0.77931 0.74890 0.88099 0.88617 0.91145 0.88400 0.91818 0.94211 0.91347 0.97993 0.99291 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.40 113.37 1.18 1.69 16 2 O -0.32 -6.80 9.74 -90.55 -0.88 -7.68 16 3 C 0.22 5.33 7.52 85.05 0.64 5.97 16 4 N -0.47 -10.01 9.39 -307.74 -2.89 -12.90 16 5 C 0.03 0.54 11.20 84.55 0.95 1.49 16 6 C 0.05 1.07 11.20 84.56 0.95 2.01 16 7 N -0.48 -13.97 10.07 -192.15 -1.94 -15.91 16 8 C 0.35 10.03 7.63 133.19 1.02 11.05 16 9 N -0.56 -16.40 6.25 -54.74 -0.34 -16.74 16 10 N -0.27 -8.97 10.99 -41.19 -0.45 -9.42 16 11 C 0.10 3.09 6.55 46.53 0.30 3.39 16 12 C -0.16 -3.37 9.46 71.24 0.67 -2.70 16 13 C -0.05 -1.81 5.60 29.85 0.17 -1.64 16 14 C -0.09 -3.48 5.03 30.59 0.15 -3.33 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 19 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 20 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H 0.06 0.80 8.11 -2.39 -0.02 0.78 16 25 H 0.06 0.80 8.11 -2.39 -0.02 0.78 16 26 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 28 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.41 9.96 5.75 -213.32 -1.23 8.74 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 2.03 6.91 -2.39 -0.02 2.01 16 32 H 0.07 1.39 6.31 -2.39 -0.02 1.37 16 33 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 2.51 7.02 -2.39 -0.02 2.49 16 37 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -74.26 336.08 2.51 -71.75 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.17 Total: 12.30 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 6.87 Total: -11.04 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -5.34 Total: -111.85 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.88 Total: -7.68 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -74.26 2.51 -71.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841632894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.386 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds