Wall clock time and date at job start Fri Apr 10 2020 14:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47904 * 110.99750 * 2 1 4 4 C 1.53995 * 107.05680 * 145.84426 * 3 2 1 5 5 C 1.54598 * 105.13981 * 358.77201 * 4 3 2 6 6 H 1.09007 * 110.71933 * 96.57887 * 5 4 3 7 7 C 1.52998 * 110.72548 * 219.68417 * 5 4 3 8 8 C 1.50707 * 109.46960 * 182.54983 * 7 5 4 9 9 O 1.21298 * 119.99694 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99624 * 179.97438 * 8 7 5 11 11 C 1.40596 * 119.99644 * 180.02562 * 10 8 7 12 12 C 1.40647 * 126.08391 * 359.97438 * 11 10 8 13 13 N 1.30909 * 108.38835 * 179.97438 * 12 11 10 14 14 N 1.40070 * 108.40589 * 0.02562 * 13 12 11 15 15 C 1.37318 * 126.07009 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00211 * 186.43274 * 15 14 13 17 17 C 1.38993 * 119.99885 * 6.43417 * 15 14 13 18 18 N 1.31292 * 119.99740 * 6.47584 * 17 15 14 19 19 Si 1.86794 * 119.99990 * 186.48129 * 17 15 14 20 20 H 1.48510 * 109.46881 * 265.03698 * 19 17 15 21 21 H 1.48499 * 109.47440 * 25.03133 * 19 17 15 22 22 H 1.48494 * 109.47249 * 145.03844 * 19 17 15 23 23 C 1.35685 * 126.08279 * 180.28720 * 11 10 8 24 24 C 1.48732 * 111.04269 * 117.57840 * 2 1 3 25 25 H 1.09004 * 109.47162 * 59.87305 * 1 2 3 26 26 H 1.09007 * 109.47193 * 179.87223 * 1 2 3 27 27 H 1.08994 * 109.47710 * 299.87374 * 1 2 3 28 28 H 1.08997 * 109.91628 * 26.48889 * 3 2 1 29 29 H 1.08993 * 110.08276 * 265.28782 * 3 2 1 30 30 H 1.09004 * 110.30694 * 239.85839 * 4 3 2 31 31 H 1.08995 * 110.31079 * 117.69245 * 4 3 2 32 32 H 1.09001 * 109.47171 * 62.55256 * 7 5 4 33 33 H 1.08999 * 109.47094 * 302.55073 * 7 5 4 34 34 H 0.96996 * 120.00070 * 0.02562 * 10 8 7 35 35 H 1.07997 * 125.80425 * 0.02562 * 12 11 10 36 36 H 0.97001 * 119.99876 * 179.97438 * 18 17 15 37 37 H 1.08005 * 126.24043 * 359.97438 * 23 11 10 38 38 H 1.09001 * 110.83824 * 81.96160 * 24 2 1 39 39 H 1.09003 * 110.58342 * 318.77000 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6531 0.6580 7 6 3.9588 -0.1307 2.7576 8 6 4.1549 -1.5629 3.1836 9 8 3.9114 -2.4646 2.4097 10 7 4.6018 -1.8416 4.4242 11 6 4.7853 -3.1778 4.8215 12 6 4.5434 -4.3171 4.0331 13 7 4.8292 -5.3790 4.7433 14 7 5.2626 -4.9616 6.0082 15 6 5.6534 -5.7797 7.0395 16 1 5.8715 -5.3587 8.0099 17 6 5.7684 -7.1496 6.8346 18 7 5.6280 -7.6468 5.6276 19 14 6.1225 -8.2832 8.2764 20 1 7.5842 -8.5311 8.3638 21 1 5.6525 -7.6472 9.5333 22 1 5.4128 -9.5724 8.0785 23 6 5.2217 -3.5977 6.0357 24 6 2.0030 -0.6427 1.2304 25 1 -0.3634 0.5158 -0.8889 26 1 -0.3634 -1.0277 -0.0023 27 1 -0.3634 0.5118 0.8910 28 1 1.2757 2.0561 0.4571 29 1 2.2116 1.7001 -1.0202 30 1 3.2135 2.0430 1.6767 31 1 4.1469 1.6456 0.2024 32 1 3.2305 0.3469 3.4130 33 1 4.9084 0.4007 2.8213 34 1 4.7969 -1.1205 5.0429 35 1 4.1838 -4.3160 3.0148 36 1 5.7087 -8.6028 5.4845 37 1 5.4909 -2.9674 6.8705 38 1 2.0093 -1.7280 1.1295 39 1 1.4244 -0.3397 2.1031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874254119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:02 Heat of formation + Delta-G solvation = 49.555851 kcal Electronic energy + Delta-G solvation = -21133.484273 eV Core-core repulsion = 17884.881674 eV Total energy + Delta-G solvation = -3248.602599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.02739 -39.24012 -38.10964 -34.19320 -33.37425 -33.07914 -30.33496 -29.92531 -28.10795 -26.98099 -25.22794 -24.41784 -21.32925 -21.06078 -20.58339 -19.71369 -19.35437 -17.48585 -16.70539 -15.79619 -15.56769 -15.40845 -15.14784 -14.97120 -14.15460 -14.02073 -13.77787 -13.41893 -13.23500 -12.88372 -12.87555 -12.26424 -12.16351 -11.69049 -11.51974 -11.43640 -11.39104 -11.25151 -11.22923 -10.93005 -10.81552 -10.55734 -10.52140 -10.07836 -9.13883 -9.07801 -8.78470 -8.50697 -8.02211 -6.66585 -6.55355 -4.20155 2.87554 3.05769 3.07300 3.11836 3.62231 3.70639 3.88520 3.98944 4.44795 4.55158 4.58324 4.77437 4.85812 5.03885 5.07684 5.18453 5.25987 5.30036 5.39180 5.51694 5.55372 5.59431 5.69737 5.74626 5.82821 5.89474 6.23362 6.26589 6.33847 6.50257 6.80322 6.94371 6.94620 6.99503 7.17155 7.28124 7.88970 8.22953 8.33311 8.66896 8.92486 9.40806 9.69783 10.42006 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.003106 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.271367 B = 9013.528052 C = 9355.856253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.525 5.525 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.073 4.073 6 H 0.093 0.907 7 C -0.128 4.128 8 C 0.496 3.504 9 O -0.532 6.532 10 N -0.628 5.628 11 C -0.060 4.060 12 C -0.032 4.032 13 N -0.264 5.264 14 N -0.143 5.143 15 C -0.326 4.326 16 H 0.115 0.885 17 C 0.048 3.952 18 N -0.772 5.772 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.264 1.264 22 H -0.275 1.275 23 C -0.084 4.084 24 C 0.043 3.957 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.396 0.604 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 16.811 -4.407 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.249 5.249 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.092 4.092 6 H 0.112 0.888 7 C -0.169 4.169 8 C 0.282 3.718 9 O -0.409 6.409 10 N -0.270 5.270 11 C -0.165 4.165 12 C -0.207 4.207 13 N -0.095 5.095 14 N 0.089 4.911 15 C -0.458 4.458 16 H 0.133 0.867 17 C -0.169 4.169 18 N -0.398 5.398 19 Si 0.757 3.243 20 H -0.197 1.197 21 H -0.188 1.188 22 H -0.200 1.200 23 C -0.235 4.235 24 C -0.084 4.084 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.228 0.772 35 H 0.193 0.807 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.116 0.884 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.731 14.382 -5.555 16.127 hybrid contribution -0.050 1.361 1.812 2.267 sum -4.781 15.744 -3.743 16.874 Atomic orbital electron populations 1.22495 0.88106 1.02313 1.00274 1.64733 1.07870 1.14425 1.37894 1.22851 0.95784 0.90207 1.00424 1.22500 0.97760 0.96891 0.99538 1.21786 0.97225 0.95257 0.94947 0.88835 1.21667 1.03108 0.94683 0.97454 1.20402 0.78608 0.91065 0.81721 1.90589 1.50690 1.47576 1.52088 1.42579 1.64341 1.06241 1.13883 1.17300 1.20086 0.83486 0.95645 1.24095 1.07005 0.88615 1.01024 1.78185 1.20968 1.20136 0.90201 1.44515 1.35416 1.02094 1.09073 1.19837 1.47417 0.88673 0.89856 0.86707 1.25622 0.95672 0.97826 0.97798 1.70188 1.35573 1.13834 1.20215 0.85837 0.78840 0.79342 0.80260 1.19700 1.18777 1.20036 1.21278 1.17326 0.86310 0.98604 1.23396 0.93722 1.01335 0.89942 0.91607 0.91140 0.95642 0.94085 0.90578 0.91396 0.90832 0.89466 0.88989 0.77172 0.80682 0.91455 0.83801 0.88356 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.73 16 2 N -0.53 -6.28 5.55 -238.54 -1.32 -7.61 16 3 C 0.04 0.34 6.70 -2.75 -0.02 0.32 16 4 C -0.13 -1.17 6.51 -25.37 -0.17 -1.33 16 5 C -0.07 -0.86 2.63 -88.76 -0.23 -1.09 16 6 H 0.09 1.29 7.97 -51.93 -0.41 0.88 16 7 C -0.13 -1.43 5.08 -27.88 -0.14 -1.58 16 8 C 0.50 8.27 7.61 -10.98 -0.08 8.19 16 9 O -0.53 -10.98 11.84 5.54 0.07 -10.92 16 10 N -0.63 -10.93 5.47 -10.00 -0.05 -10.98 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 C -0.03 -0.84 10.85 -17.04 -0.18 -1.03 16 13 N -0.26 -7.76 10.47 30.80 0.32 -7.44 16 14 N -0.14 -3.97 3.73 -11.41 -0.04 -4.01 16 15 C -0.33 -8.71 10.23 -14.81 -0.15 -8.86 16 16 H 0.12 2.74 7.84 -52.49 -0.41 2.33 16 17 C 0.05 1.25 5.48 -17.50 -0.10 1.15 16 18 N -0.77 -21.79 11.90 55.50 0.66 -21.13 16 19 Si 0.93 19.08 29.56 -169.99 -5.02 14.05 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 24 C 0.04 0.56 5.40 -1.78 -0.01 0.56 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 27 H 0.03 0.24 8.01 -51.93 -0.42 -0.18 16 28 H 0.04 0.36 7.73 -51.93 -0.40 -0.04 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.52 7.85 -51.93 -0.41 0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 5.23 8.82 -40.82 -0.36 4.87 16 35 H 0.18 4.61 5.92 -52.49 -0.31 4.30 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.14 2.84 8.06 -52.48 -0.42 2.42 16 38 H 0.10 1.56 7.24 -51.93 -0.38 1.18 16 39 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -33.44 322.44 -7.42 -40.85 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.59 Total: 9.40 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.29 Total: -7.07 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.44 Total: -51.17 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.44 -7.42 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874254119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.406 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds