Wall clock time and date at job start Fri Apr 10 2020 14:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47904 * 110.99750 * 2 1 4 4 C 1.53995 * 107.05680 * 145.84426 * 3 2 1 5 5 C 1.54598 * 105.13981 * 358.77201 * 4 3 2 6 6 H 1.09007 * 110.71933 * 96.57887 * 5 4 3 7 7 C 1.52998 * 110.72548 * 219.68417 * 5 4 3 8 8 C 1.50707 * 109.46960 * 182.54983 * 7 5 4 9 9 O 1.21298 * 119.99694 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99624 * 179.97438 * 8 7 5 11 11 C 1.40596 * 119.99644 * 180.02562 * 10 8 7 12 12 C 1.40647 * 126.08391 * 359.97438 * 11 10 8 13 13 N 1.30909 * 108.38835 * 179.97438 * 12 11 10 14 14 N 1.40070 * 108.40589 * 0.02562 * 13 12 11 15 15 C 1.37318 * 126.07009 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00211 * 186.43274 * 15 14 13 17 17 C 1.38993 * 119.99885 * 6.43417 * 15 14 13 18 18 N 1.31292 * 119.99740 * 6.47584 * 17 15 14 19 19 Si 1.86794 * 119.99990 * 186.48129 * 17 15 14 20 20 H 1.48510 * 109.46881 * 265.03698 * 19 17 15 21 21 H 1.48499 * 109.47440 * 25.03133 * 19 17 15 22 22 H 1.48494 * 109.47249 * 145.03844 * 19 17 15 23 23 C 1.35685 * 126.08279 * 180.28720 * 11 10 8 24 24 C 1.48732 * 111.04269 * 117.57840 * 2 1 3 25 25 H 1.09004 * 109.47162 * 59.87305 * 1 2 3 26 26 H 1.09007 * 109.47193 * 179.87223 * 1 2 3 27 27 H 1.08994 * 109.47710 * 299.87374 * 1 2 3 28 28 H 1.08997 * 109.91628 * 26.48889 * 3 2 1 29 29 H 1.08993 * 110.08276 * 265.28782 * 3 2 1 30 30 H 1.09004 * 110.30694 * 239.85839 * 4 3 2 31 31 H 1.08995 * 110.31079 * 117.69245 * 4 3 2 32 32 H 1.09001 * 109.47171 * 62.55256 * 7 5 4 33 33 H 1.08999 * 109.47094 * 302.55073 * 7 5 4 34 34 H 0.96996 * 120.00070 * 0.02562 * 10 8 7 35 35 H 1.07997 * 125.80425 * 0.02562 * 12 11 10 36 36 H 0.97001 * 119.99876 * 179.97438 * 18 17 15 37 37 H 1.08005 * 126.24043 * 359.97438 * 23 11 10 38 38 H 1.09001 * 110.83824 * 81.96160 * 24 2 1 39 39 H 1.09003 * 110.58342 * 318.77000 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6531 0.6580 7 6 3.9588 -0.1307 2.7576 8 6 4.1549 -1.5629 3.1836 9 8 3.9114 -2.4646 2.4097 10 7 4.6018 -1.8416 4.4242 11 6 4.7853 -3.1778 4.8215 12 6 4.5434 -4.3171 4.0331 13 7 4.8292 -5.3790 4.7433 14 7 5.2626 -4.9616 6.0082 15 6 5.6534 -5.7797 7.0395 16 1 5.8715 -5.3587 8.0099 17 6 5.7684 -7.1496 6.8346 18 7 5.6280 -7.6468 5.6276 19 14 6.1225 -8.2832 8.2764 20 1 7.5842 -8.5311 8.3638 21 1 5.6525 -7.6472 9.5333 22 1 5.4128 -9.5724 8.0785 23 6 5.2217 -3.5977 6.0357 24 6 2.0030 -0.6427 1.2304 25 1 -0.3634 0.5158 -0.8889 26 1 -0.3634 -1.0277 -0.0023 27 1 -0.3634 0.5118 0.8910 28 1 1.2757 2.0561 0.4571 29 1 2.2116 1.7001 -1.0202 30 1 3.2135 2.0430 1.6767 31 1 4.1469 1.6456 0.2024 32 1 3.2305 0.3469 3.4130 33 1 4.9084 0.4007 2.8213 34 1 4.7969 -1.1205 5.0429 35 1 4.1838 -4.3160 3.0148 36 1 5.7087 -8.6028 5.4845 37 1 5.4909 -2.9674 6.8705 38 1 2.0093 -1.7280 1.1295 39 1 1.4244 -0.3397 2.1031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874254119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:01 Heat of formation + Delta-G solvation = 24.431555 kcal Electronic energy + Delta-G solvation = -21134.573744 eV Core-core repulsion = 17884.881674 eV Total energy + Delta-G solvation = -3249.692070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69780 -40.59431 -39.34362 -35.88684 -34.91837 -34.29550 -32.24118 -30.94226 -29.67994 -28.18837 -26.78072 -25.67270 -22.90420 -22.33857 -21.81936 -21.14527 -20.79760 -19.27957 -17.97478 -17.39630 -16.92614 -16.82982 -16.31053 -16.18819 -15.65484 -15.35080 -14.92840 -14.84238 -14.67713 -14.52450 -13.92760 -13.49788 -13.29424 -13.15062 -13.05040 -12.88619 -12.82978 -12.39233 -12.23248 -12.11807 -12.07530 -11.81180 -11.67380 -11.39283 -10.98470 -10.82527 -10.51492 -10.07716 -9.36327 -8.49606 -8.47291 -6.22824 1.24584 1.39860 1.57276 1.59360 1.90311 2.08507 2.37665 2.57128 2.94153 3.09713 3.11558 3.68752 3.74326 3.97149 4.10945 4.30742 4.41771 4.45714 4.48981 4.56809 4.59999 4.66407 4.69834 4.81058 4.91831 4.95941 5.01656 5.03469 5.08569 5.13927 5.31381 5.31915 5.41202 5.56217 5.94873 5.98006 6.12538 6.35405 6.75482 6.85965 7.46900 7.53524 7.71220 8.52863 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.003106 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.271367 B = 9013.528052 C = 9355.856253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.548 5.548 3 C 0.033 3.967 4 C -0.118 4.118 5 C -0.074 4.074 6 H 0.064 0.936 7 C -0.112 4.112 8 C 0.491 3.509 9 O -0.576 6.576 10 N -0.621 5.621 11 C -0.043 4.043 12 C -0.060 4.060 13 N -0.315 5.315 14 N -0.170 5.170 15 C -0.357 4.357 16 H 0.140 0.860 17 C -0.006 4.006 18 N -0.828 5.828 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.244 1.244 22 H -0.278 1.278 23 C -0.082 4.082 24 C 0.044 3.956 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.420 0.580 35 H 0.166 0.834 36 H 0.276 0.724 37 H 0.188 0.812 38 H 0.056 0.944 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 20.019 -2.584 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.272 5.272 3 C -0.095 4.095 4 C -0.156 4.156 5 C -0.094 4.094 6 H 0.083 0.917 7 C -0.152 4.152 8 C 0.280 3.720 9 O -0.456 6.456 10 N -0.267 5.267 11 C -0.149 4.149 12 C -0.236 4.236 13 N -0.147 5.147 14 N 0.061 4.939 15 C -0.488 4.488 16 H 0.158 0.842 17 C -0.217 4.217 18 N -0.456 5.456 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.167 1.167 22 H -0.203 1.203 23 C -0.232 4.232 24 C -0.083 4.083 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.086 0.914 37 H 0.205 0.795 38 H 0.074 0.926 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.406 17.672 -3.727 18.590 hybrid contribution -0.210 0.496 1.112 1.236 sum -4.616 18.168 -2.614 18.927 Atomic orbital electron populations 1.22520 0.87251 1.02007 1.01413 1.64674 1.08962 1.16226 1.37373 1.22948 0.96398 0.88903 1.01233 1.22480 0.97802 0.94819 1.00483 1.21743 0.95556 0.97027 0.95049 0.91728 1.21699 1.05811 0.90507 0.97175 1.21575 0.76602 0.93185 0.80675 1.90595 1.51991 1.49699 1.53270 1.42584 1.64615 1.04497 1.14961 1.17389 1.17509 0.85364 0.94623 1.24138 1.08307 0.90022 1.01087 1.78073 1.22739 1.22083 0.91845 1.44810 1.36607 1.03675 1.08808 1.20586 1.47940 0.89549 0.90684 0.84227 1.26881 0.94615 0.99414 1.00824 1.70371 1.37784 1.14238 1.23199 0.84589 0.78827 0.76285 0.76535 1.18758 1.16717 1.20334 1.22040 1.15789 0.85501 0.99891 1.23235 0.95189 0.99112 0.90789 0.90088 0.92291 0.94756 0.92582 0.89996 0.88752 0.89708 0.86213 0.85459 0.74283 0.81718 0.91420 0.79506 0.92589 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.40 127.69 1.20 1.52 16 2 N -0.55 -12.68 5.55 -908.59 -5.04 -17.72 16 3 C 0.03 0.54 6.70 86.45 0.58 1.12 16 4 C -0.12 -1.71 6.51 31.47 0.20 -1.50 16 5 C -0.07 -1.62 2.63 -9.59 -0.03 -1.65 16 6 H 0.06 1.79 7.97 -2.38 -0.02 1.77 16 7 C -0.11 -2.12 5.08 29.85 0.15 -1.97 16 8 C 0.49 15.83 7.61 87.66 0.67 16.50 16 9 O -0.58 -24.61 11.84 -3.08 -0.04 -24.65 16 10 N -0.62 -20.43 5.47 -303.92 -1.66 -22.09 16 11 C -0.04 -1.96 6.90 37.73 0.26 -1.70 16 12 C -0.06 -3.34 10.85 85.42 0.93 -2.42 16 13 N -0.32 -19.41 10.47 -56.47 -0.59 -20.00 16 14 N -0.17 -9.56 3.73 -190.01 -0.71 -10.27 16 15 C -0.36 -19.14 10.23 84.02 0.86 -18.28 16 16 H 0.14 6.47 7.84 -2.91 -0.02 6.45 16 17 C -0.01 -0.32 5.48 84.95 0.47 0.15 16 18 N -0.83 -48.68 11.90 21.66 0.26 -48.42 16 19 Si 1.02 39.11 29.56 68.60 2.03 41.13 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.24 -8.50 7.11 99.48 0.71 -7.79 16 22 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 23 C -0.08 -3.81 11.49 83.38 0.96 -2.85 16 24 C 0.04 1.15 5.40 86.61 0.47 1.62 16 25 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.03 0.59 8.01 -2.39 -0.02 0.57 16 28 H 0.06 0.77 7.73 -2.39 -0.02 0.75 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 0.92 7.85 -2.38 -0.02 0.90 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.62 8.05 -2.39 -0.02 1.60 16 33 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.42 9.56 8.82 -92.71 -0.82 8.75 16 35 H 0.17 9.31 5.92 -2.91 -0.02 9.30 16 36 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 38 H 0.06 1.91 7.24 -2.39 -0.02 1.89 16 39 H 0.05 1.10 7.81 -2.39 -0.02 1.08 16 Total: -1.00 -78.98 322.44 1.21 -77.78 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.24 Total: 33.70 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 6.72 Total: -9.46 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -7.74 Total: -118.50 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.04 Total: -24.65 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -78.98 1.21 -77.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874254119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.207 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds