Wall clock time and date at job start Fri Apr 10 2020 14:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48531 * 111.00378 * 2 1 4 4 C 1.54940 * 103.23211 * 159.71923 * 3 2 1 5 5 C 1.54603 * 102.91756 * 322.58807 * 4 3 2 6 6 C 1.47909 * 110.99712 * 117.39294 * 2 1 3 7 7 H 1.08997 * 110.08378 * 333.60092 * 6 2 1 8 8 C 1.50708 * 109.91578 * 94.80499 * 6 2 1 9 9 C 1.35362 * 126.38201 * 232.89508 * 8 6 2 10 10 C 1.41500 * 105.50023 * 180.13993 * 9 8 6 11 11 C 1.47715 * 126.51681 * 179.84470 * 10 9 8 12 12 O 1.21569 * 120.00273 * 359.70536 * 11 10 9 13 13 N 1.34779 * 119.99862 * 179.71245 * 11 10 9 14 14 C 1.46500 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47109 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00496 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99572 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 N 1.31808 * 106.96637 * 359.57212 * 10 9 8 24 24 N 1.28468 * 110.07106 * 0.26765 * 23 10 9 25 25 H 0.96997 * 124.88908 * 179.97438 * 24 23 10 26 26 H 1.08999 * 109.47119 * 302.61010 * 1 2 3 27 27 H 1.09007 * 109.46926 * 62.60303 * 1 2 3 28 28 H 1.09000 * 109.47380 * 182.60381 * 1 2 3 29 29 H 1.09003 * 110.66624 * 41.28267 * 3 2 1 30 30 H 1.09001 * 110.80591 * 278.22166 * 3 2 1 31 31 H 1.08990 * 110.72762 * 204.22733 * 4 3 2 32 32 H 1.08999 * 110.87427 * 81.01196 * 4 3 2 33 33 H 1.09002 * 110.30009 * 263.03818 * 5 4 3 34 34 H 1.08991 * 110.30676 * 140.87327 * 5 4 3 35 35 H 1.08001 * 127.24893 * 359.97376 * 9 8 6 36 36 H 0.97003 * 119.99860 * 359.97438 * 13 11 10 37 37 H 1.09002 * 109.47129 * 59.99342 * 14 13 11 38 38 H 1.08998 * 109.46845 * 300.00149 * 14 13 11 39 39 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2982 0.1053 1.5931 6 6 1.9990 -0.6353 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0899 0.9642 9 6 1.8462 -3.1428 1.6877 10 6 2.3872 -4.2900 1.0605 11 6 2.1927 -5.6937 1.4773 12 8 1.5135 -5.9498 2.4525 13 7 2.7684 -6.6907 0.7764 14 6 2.5760 -8.0828 1.1900 15 6 3.3180 -8.9942 0.2467 16 1 3.8767 -8.5781 -0.5786 17 6 3.2836 -10.3593 0.4373 18 7 2.6029 -10.8661 1.4420 19 14 4.2040 -11.4890 -0.7314 20 1 5.6516 -11.1590 -0.7018 21 1 3.6827 -11.3061 -2.1099 22 1 4.0098 -12.9002 -0.3115 23 7 3.0930 -3.8683 0.0303 24 7 3.0483 -2.5863 -0.0396 25 1 3.4929 -2.0517 -0.7159 26 1 -0.3633 0.5538 0.8657 27 1 -0.3633 0.4729 -0.9125 28 1 -0.3634 -1.0266 0.0467 29 1 1.4237 2.0205 0.6729 30 1 2.0041 1.8003 -1.0085 31 1 3.8124 2.1351 0.9716 32 1 4.1141 0.8847 -0.2771 33 1 3.2136 0.5486 2.5853 34 1 4.1469 -0.5775 1.5541 35 1 1.2121 -3.1132 2.5615 36 1 3.3102 -6.4863 -0.0019 37 1 1.5134 -8.3249 1.1680 38 1 2.9583 -8.2174 2.2018 39 1 2.1253 -10.2794 2.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897591119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:36 Heat of formation + Delta-G solvation = 31.931241 kcal Electronic energy + Delta-G solvation = -21013.405968 eV Core-core repulsion = 17764.039109 eV Total energy + Delta-G solvation = -3249.366859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.59981 -39.33017 -38.42558 -34.36045 -32.70638 -32.46450 -31.84935 -31.53396 -28.14293 -26.83636 -25.98040 -23.84526 -22.39501 -21.69166 -21.61769 -20.90918 -19.30619 -17.82800 -17.29095 -16.45866 -16.15774 -15.56063 -15.21931 -14.82705 -14.71688 -14.15526 -14.01396 -13.73077 -13.61257 -13.52329 -12.94074 -12.81540 -12.24594 -12.13021 -11.95084 -11.87165 -11.79286 -11.53648 -11.19649 -10.95690 -10.72994 -10.70245 -10.10990 -9.42462 -9.18504 -9.05401 -8.91923 -8.73144 -8.61945 -7.92074 -6.45677 -4.18294 1.85356 2.21175 2.96688 3.42655 3.44957 3.49512 3.63762 4.00561 4.01350 4.14981 4.20385 4.45140 4.51036 4.63080 4.76738 4.87700 4.98862 5.01258 5.06734 5.24397 5.33334 5.33343 5.40853 5.54712 5.59413 5.60510 5.65962 5.77325 5.90589 6.33246 6.48592 6.52137 7.02927 7.10498 7.28174 7.37478 7.72051 8.02219 8.33832 8.56425 8.78595 9.02388 9.54898 10.94736 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.003055 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.616306 B = 9162.123985 C = 9416.159160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.134 3.866 7 H 0.082 0.918 8 C 0.028 3.972 9 C -0.179 4.179 10 C 0.000 4.000 11 C 0.584 3.416 12 O -0.551 6.551 13 N -0.691 5.691 14 C 0.239 3.761 15 C -0.622 4.622 16 H 0.058 0.942 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 1.076 2.924 20 H -0.286 1.286 21 H -0.286 1.286 22 H -0.281 1.281 23 N -0.258 5.258 24 N -0.368 5.368 25 H 0.443 0.557 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.400 0.600 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 27.968 -3.176 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.164 4.164 5 C -0.167 4.167 6 C 0.024 3.976 7 H 0.100 0.900 8 C -0.099 4.099 9 C -0.208 4.208 10 C -0.161 4.161 11 C 0.366 3.634 12 O -0.428 6.428 13 N -0.339 5.339 14 C 0.118 3.882 15 C -0.660 4.660 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.538 5.538 19 Si 0.904 3.096 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.206 1.206 23 N -0.094 5.094 24 N -0.081 5.081 25 H 0.287 0.713 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.176 0.824 36 H 0.234 0.766 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.841 25.420 -4.103 25.762 hybrid contribution -0.731 2.768 0.921 3.008 sum 0.110 28.188 -3.183 28.367 Atomic orbital electron populations 1.22533 0.86854 1.02801 1.01080 1.64558 1.09064 1.14940 1.36066 1.23273 0.95025 0.89519 1.01572 1.22531 0.96587 0.98748 0.98491 1.22527 0.96919 0.97638 0.99637 1.20853 0.97086 0.87543 0.92117 0.89999 1.20939 1.00270 0.95353 0.93326 1.21479 1.06020 0.89574 1.03705 1.22216 1.02132 0.95916 0.95809 1.17014 0.80546 0.82455 0.83342 1.90738 1.40929 1.83586 1.27581 1.46183 1.49674 1.07691 1.30316 1.19229 0.96906 0.75937 0.96170 1.22075 1.35464 0.93703 1.14737 0.92378 1.25876 0.96888 0.96531 0.99035 1.70757 1.29179 1.39393 1.14470 0.83444 0.75557 0.75894 0.74754 1.21288 1.21279 1.20599 1.73633 1.21240 0.93825 1.20687 1.43126 1.37605 1.04084 1.23271 0.71263 0.94946 0.90986 0.90797 0.93278 0.89633 0.90551 0.90641 0.90352 0.90477 0.82421 0.76637 0.96280 0.96269 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.06 0.56 0.68 16 2 N -0.52 -4.08 5.17 -232.16 -1.20 -5.28 16 3 C 0.03 0.19 6.56 -1.90 -0.01 0.18 16 4 C -0.13 -0.65 7.06 -24.86 -0.18 -0.83 16 5 C -0.13 -0.86 6.56 -25.37 -0.17 -1.02 16 6 C 0.13 1.13 2.95 -67.79 -0.20 0.93 16 7 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 8 C 0.03 0.34 5.86 -82.20 -0.48 -0.15 16 9 C -0.18 -2.72 10.72 -39.37 -0.42 -3.14 16 10 C 0.00 0.01 7.13 -82.76 -0.59 -0.58 16 11 C 0.58 13.26 7.83 -12.39 -0.10 13.17 16 12 O -0.55 -14.09 16.93 5.30 0.09 -14.00 16 13 N -0.69 -16.37 5.55 -62.47 -0.35 -16.72 16 14 C 0.24 6.62 4.74 -5.20 -0.02 6.60 16 15 C -0.62 -17.83 9.28 -34.44 -0.32 -18.14 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 17 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 18 N -0.90 -27.93 13.65 55.43 0.76 -27.18 16 19 Si 1.08 25.11 29.90 -169.99 -5.08 20.02 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 N -0.26 -4.19 11.92 33.42 0.40 -3.79 16 24 N -0.37 -4.52 6.83 33.50 0.23 -4.29 16 25 H 0.44 4.11 8.96 -190.44 -1.71 2.40 16 26 H 0.03 0.21 8.01 -51.93 -0.42 -0.21 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.25 7.96 -51.93 -0.41 -0.16 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.58 7.68 -51.93 -0.40 0.19 16 35 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.40 8.74 8.05 -40.82 -0.33 8.41 16 37 H 0.02 0.57 8.01 -51.93 -0.42 0.16 16 38 H 0.02 0.57 8.01 -51.93 -0.42 0.16 16 39 H 0.27 8.52 7.22 -40.82 -0.29 8.22 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -34.33 330.94 -9.14 -43.46 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.95 Total: 4.55 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.02 Total: -1.76 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.16 Total: -57.25 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.33 -9.14 -43.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.395 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds