Wall clock time and date at job start Fri Apr 10 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48531 * 111.00378 * 2 1 4 4 C 1.54940 * 103.23211 * 159.71923 * 3 2 1 5 5 C 1.54603 * 102.91756 * 322.58807 * 4 3 2 6 6 C 1.47909 * 110.99712 * 117.39294 * 2 1 3 7 7 H 1.08997 * 110.08378 * 333.60092 * 6 2 1 8 8 C 1.50708 * 109.91578 * 94.80499 * 6 2 1 9 9 C 1.35362 * 126.38201 * 232.89508 * 8 6 2 10 10 C 1.41500 * 105.50023 * 180.13993 * 9 8 6 11 11 C 1.47715 * 126.51681 * 179.84470 * 10 9 8 12 12 O 1.21569 * 120.00273 * 359.70536 * 11 10 9 13 13 N 1.34779 * 119.99862 * 179.71245 * 11 10 9 14 14 C 1.46500 * 120.00157 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47109 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00496 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99572 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 N 1.31808 * 106.96637 * 359.57212 * 10 9 8 24 24 N 1.28468 * 110.07106 * 0.26765 * 23 10 9 25 25 H 0.96997 * 124.88908 * 179.97438 * 24 23 10 26 26 H 1.08999 * 109.47119 * 302.61010 * 1 2 3 27 27 H 1.09007 * 109.46926 * 62.60303 * 1 2 3 28 28 H 1.09000 * 109.47380 * 182.60381 * 1 2 3 29 29 H 1.09003 * 110.66624 * 41.28267 * 3 2 1 30 30 H 1.09001 * 110.80591 * 278.22166 * 3 2 1 31 31 H 1.08990 * 110.72762 * 204.22733 * 4 3 2 32 32 H 1.08999 * 110.87427 * 81.01196 * 4 3 2 33 33 H 1.09002 * 110.30009 * 263.03818 * 5 4 3 34 34 H 1.08991 * 110.30676 * 140.87327 * 5 4 3 35 35 H 1.08001 * 127.24893 * 359.97376 * 9 8 6 36 36 H 0.97003 * 119.99860 * 359.97438 * 13 11 10 37 37 H 1.09002 * 109.47129 * 59.99342 * 14 13 11 38 38 H 1.08998 * 109.46845 * 300.00149 * 14 13 11 39 39 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2982 0.1053 1.5931 6 6 1.9990 -0.6353 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0899 0.9642 9 6 1.8462 -3.1428 1.6877 10 6 2.3872 -4.2900 1.0605 11 6 2.1927 -5.6937 1.4773 12 8 1.5135 -5.9498 2.4525 13 7 2.7684 -6.6907 0.7764 14 6 2.5760 -8.0828 1.1900 15 6 3.3180 -8.9942 0.2467 16 1 3.8767 -8.5781 -0.5786 17 6 3.2836 -10.3593 0.4373 18 7 2.6029 -10.8661 1.4420 19 14 4.2040 -11.4890 -0.7314 20 1 5.6516 -11.1590 -0.7018 21 1 3.6827 -11.3061 -2.1099 22 1 4.0098 -12.9002 -0.3115 23 7 3.0930 -3.8683 0.0303 24 7 3.0483 -2.5863 -0.0396 25 1 3.4929 -2.0517 -0.7159 26 1 -0.3633 0.5538 0.8657 27 1 -0.3633 0.4729 -0.9125 28 1 -0.3634 -1.0266 0.0467 29 1 1.4237 2.0205 0.6729 30 1 2.0041 1.8003 -1.0085 31 1 3.8124 2.1351 0.9716 32 1 4.1141 0.8847 -0.2771 33 1 3.2136 0.5486 2.5853 34 1 4.1469 -0.5775 1.5541 35 1 1.2121 -3.1132 2.5615 36 1 3.3102 -6.4863 -0.0019 37 1 1.5134 -8.3249 1.1680 38 1 2.9583 -8.2174 2.2018 39 1 2.1253 -10.2794 2.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897591119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:35 Heat of formation + Delta-G solvation = 4.736071 kcal Electronic energy + Delta-G solvation = -21014.585239 eV Core-core repulsion = 17764.039109 eV Total energy + Delta-G solvation = -3250.546130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.79779 -40.43195 -39.81476 -36.48739 -34.54973 -33.27017 -32.88195 -32.76369 -29.24200 -28.63006 -26.54416 -25.71564 -24.08486 -22.81357 -22.15238 -21.87979 -21.05551 -19.27997 -18.75664 -17.83610 -17.05903 -16.84354 -16.72093 -16.09682 -15.88419 -15.61188 -15.36290 -14.87698 -14.65417 -14.61213 -14.47549 -14.16178 -14.10262 -13.40222 -13.13786 -12.70387 -12.54550 -12.52298 -12.39923 -12.06816 -11.96430 -11.90345 -11.56033 -11.35222 -10.93056 -10.78004 -10.51589 -10.07507 -9.98663 -9.58386 -8.81244 -6.56230 0.46420 1.01601 1.55553 1.64781 1.83780 1.85847 2.30232 2.34164 2.57322 2.90700 3.07126 3.35468 3.53617 3.61675 3.88043 4.05556 4.13810 4.31020 4.41748 4.49415 4.52638 4.57714 4.71505 4.76393 4.80117 4.92270 4.92305 5.00132 5.05272 5.14127 5.21674 5.24440 5.34314 5.51296 5.78330 5.93148 6.03347 6.09515 6.29750 6.61452 6.88317 7.13305 7.31956 8.58601 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.003055 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.616306 B = 9162.123985 C = 9416.159160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.035 3.965 4 C -0.120 4.120 5 C -0.127 4.127 6 C 0.134 3.866 7 H 0.089 0.911 8 C 0.059 3.941 9 C -0.196 4.196 10 C -0.031 4.031 11 C 0.584 3.416 12 O -0.588 6.588 13 N -0.691 5.691 14 C 0.252 3.748 15 C -0.633 4.633 16 H 0.072 0.928 17 C -0.030 4.030 18 N -0.927 5.927 19 Si 1.131 2.869 20 H -0.264 1.264 21 H -0.264 1.264 22 H -0.283 1.283 23 N -0.265 5.265 24 N -0.344 5.344 25 H 0.460 0.540 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.162 0.838 36 H 0.409 0.591 37 H -0.010 1.010 38 H -0.009 1.009 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 30.618 -4.899 31.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.092 4.092 4 C -0.158 4.158 5 C -0.165 4.165 6 C 0.023 3.977 7 H 0.107 0.893 8 C -0.069 4.069 9 C -0.225 4.225 10 C -0.190 4.190 11 C 0.369 3.631 12 O -0.468 6.468 13 N -0.339 5.339 14 C 0.129 3.871 15 C -0.670 4.670 16 H 0.090 0.910 17 C -0.229 4.229 18 N -0.563 5.563 19 Si 0.950 3.050 20 H -0.189 1.189 21 H -0.189 1.189 22 H -0.208 1.208 23 N -0.103 5.103 24 N -0.060 5.060 25 H 0.307 0.693 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.245 0.755 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.109 28.136 -5.848 28.815 hybrid contribution -1.152 2.125 1.453 2.820 sum 0.956 30.261 -4.395 30.593 Atomic orbital electron populations 1.22527 0.86744 1.01857 1.02148 1.64505 1.09296 1.16554 1.35442 1.23342 0.95209 0.88208 1.02428 1.22543 0.96353 0.98879 0.98028 1.22530 0.95222 0.97774 1.00982 1.20975 0.98554 0.85314 0.92815 0.89288 1.21352 0.97689 0.96575 0.91327 1.21622 1.06862 0.89374 1.04599 1.21596 1.05244 0.94053 0.98128 1.17547 0.79157 0.83993 0.82373 1.90698 1.42319 1.84634 1.29105 1.45972 1.50504 1.06426 1.31015 1.18793 0.94903 0.78431 0.94932 1.22409 1.35379 0.94230 1.15010 0.90961 1.27677 0.96703 0.98837 0.99644 1.70898 1.30650 1.39135 1.15582 0.82787 0.75435 0.73475 0.73347 1.18877 1.18915 1.20809 1.73538 1.21078 0.95638 1.20033 1.43184 1.36521 1.03058 1.23284 0.69265 0.93805 0.90026 0.92759 0.92324 0.88794 0.88841 0.90474 0.89022 0.91366 0.82082 0.75475 0.99215 0.99141 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.40 127.69 1.20 1.40 16 2 N -0.53 -6.83 5.17 -888.40 -4.59 -11.42 16 3 C 0.03 0.27 6.56 86.65 0.57 0.84 16 4 C -0.12 -0.80 7.06 31.80 0.22 -0.58 16 5 C -0.13 -1.29 6.56 31.47 0.21 -1.08 16 6 C 0.13 1.92 2.95 44.31 0.13 2.05 16 7 H 0.09 1.21 7.73 -2.39 -0.02 1.19 16 8 C 0.06 1.30 5.86 41.40 0.24 1.54 16 9 C -0.20 -5.90 10.72 22.41 0.24 -5.66 16 10 C -0.03 -1.17 7.13 42.46 0.30 -0.87 16 11 C 0.58 27.64 7.83 86.75 0.68 28.32 16 12 O -0.59 -31.70 16.93 -3.93 -0.07 -31.76 16 13 N -0.69 -33.93 5.55 -469.84 -2.61 -36.53 16 14 C 0.25 14.68 4.74 85.63 0.41 15.08 16 15 C -0.63 -36.81 9.28 25.60 0.24 -36.57 16 16 H 0.07 3.93 7.60 -2.91 -0.02 3.90 16 17 C -0.03 -1.75 5.46 84.66 0.46 -1.29 16 18 N -0.93 -58.90 13.65 21.45 0.29 -58.60 16 19 Si 1.13 49.65 29.90 68.60 2.05 51.70 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 N -0.26 -8.43 11.92 -48.17 -0.57 -9.00 16 24 N -0.34 -7.84 6.83 -47.92 -0.33 -8.16 16 25 H 0.46 7.30 8.96 -220.00 -1.97 5.33 16 26 H 0.04 0.45 8.01 -2.39 -0.02 0.43 16 27 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.38 7.96 -2.39 -0.02 0.36 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.84 7.68 -2.39 -0.02 0.82 16 35 H 0.16 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.41 18.22 8.05 -92.71 -0.75 17.47 16 37 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 38 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 39 H 0.25 16.76 7.22 -92.70 -0.67 16.09 16 Total: -1.00 -76.89 330.94 -2.46 -79.35 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -1.54 Total: 21.25 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.90 Total: 3.18 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -7.81 Total: -123.72 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.07 Total: -31.76 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -76.89 -2.46 -79.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.090 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds