Wall clock time and date at job start Fri Apr 10 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20749 * 120.00089 * 2 1 4 4 C 1.50708 * 119.99764 * 180.02562 * 2 1 3 5 5 C 1.52994 * 109.47016 * 179.97438 * 4 2 1 6 6 N 1.46501 * 109.47435 * 179.97438 * 5 4 2 7 7 C 1.35308 * 125.86908 * 124.99989 * 6 5 4 8 8 C 1.35346 * 106.17783 * 179.97438 * 7 6 5 9 9 C 1.50697 * 126.75409 * 180.02562 * 8 7 6 10 10 N 1.46490 * 109.47352 * 95.00225 * 9 8 7 11 11 C 1.36938 * 120.00498 * 89.99994 * 10 9 8 12 12 H 1.08001 * 120.00066 * 218.05729 * 11 10 9 13 13 C 1.38814 * 119.99776 * 38.05363 * 11 10 9 14 14 N 1.31614 * 119.99938 * 20.57536 * 13 11 10 15 15 Si 1.86802 * 119.99754 * 200.57504 * 13 11 10 16 16 H 1.48497 * 109.47248 * 60.00245 * 15 13 11 17 17 H 1.48501 * 109.46886 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47081 * 300.00164 * 15 13 11 19 19 C 1.46505 * 119.99862 * 269.72496 * 10 9 8 20 20 C 1.52998 * 117.50196 * 193.92070 * 19 10 9 21 21 C 1.52998 * 60.00152 * 252.51001 * 20 19 10 22 22 N 1.33772 * 106.49623 * 0.26259 * 8 7 6 23 23 N 1.28643 * 108.88363 * 359.56429 * 22 8 7 24 24 H 1.09001 * 109.46781 * 269.99833 * 1 2 3 25 25 H 1.08998 * 109.46714 * 29.99994 * 1 2 3 26 26 H 1.08999 * 109.47305 * 149.99832 * 1 2 3 27 27 H 1.09000 * 109.46767 * 60.00205 * 4 2 1 28 28 H 1.08995 * 109.46775 * 299.99795 * 4 2 1 29 29 H 1.09006 * 109.47098 * 59.99885 * 5 4 2 30 30 H 1.09004 * 109.47430 * 300.00271 * 5 4 2 31 31 H 1.08005 * 126.91017 * 0.02562 * 7 6 5 32 32 H 1.08996 * 109.47087 * 334.99804 * 9 8 7 33 33 H 1.09007 * 109.46641 * 215.00108 * 9 8 7 34 34 H 0.97004 * 119.99705 * 174.95831 * 14 13 11 35 35 H 1.09003 * 115.54909 * 339.62826 * 19 10 9 36 36 H 1.09002 * 117.49705 * 0.02562 * 20 19 10 37 37 H 1.09003 * 117.50234 * 145.01582 * 20 19 10 38 38 H 1.09003 * 117.49942 * 252.50963 * 21 20 19 39 39 H 1.09001 * 117.51708 * 107.47543 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0257 -0.0011 6 7 4.4973 -2.2944 -0.0011 7 6 5.4381 -2.6667 -0.8994 8 6 5.8493 -3.9007 -0.5254 9 6 6.8913 -4.7492 -1.2074 10 7 8.1883 -4.5464 -0.5573 11 6 8.5591 -5.3415 0.4941 12 1 9.1007 -4.9178 1.3269 13 6 8.2387 -6.6922 0.4896 14 7 7.9575 -7.2979 -0.6445 15 14 8.2069 -7.6499 2.0931 16 1 7.2063 -7.0470 3.0100 17 1 7.8397 -9.0624 1.8187 18 1 9.5498 -7.6017 2.7252 19 6 9.0913 -3.4966 -1.0358 20 6 10.5416 -3.5368 -0.5501 21 6 9.5848 -2.4697 -0.0147 22 7 5.1449 -4.2213 0.5658 23 7 4.3568 -3.2462 0.8539 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.9972 -1.8763 -0.8909 28 1 1.9972 -1.8771 0.8891 29 1 4.0284 -0.4543 0.8889 30 1 4.0278 -0.4538 -0.8911 31 1 5.7906 -2.0939 -1.7445 32 1 6.9623 -4.4637 -2.2569 33 1 6.6089 -5.7996 -1.1349 34 1 7.8054 -8.2559 -0.6579 35 1 8.9102 -3.1483 -2.0527 36 1 10.8240 -4.3445 0.1251 37 1 11.3150 -3.2151 -1.2475 38 1 9.7288 -1.4458 -0.3598 39 1 9.2373 -2.5749 1.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906259588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:53 Heat of formation + Delta-G solvation = 89.850540 kcal Electronic energy + Delta-G solvation = -21387.683064 eV Core-core repulsion = 18140.827774 eV Total energy + Delta-G solvation = -3246.855290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.99667 -40.58567 -38.72866 -36.30847 -35.27440 -33.26980 -32.56758 -31.32835 -30.49766 -27.66336 -25.98585 -25.49571 -22.93135 -22.58167 -22.03082 -21.44989 -20.57236 -18.60687 -17.96845 -17.43572 -17.19630 -16.65254 -16.34050 -16.18158 -15.80305 -15.69115 -15.47341 -14.98474 -14.53006 -14.27105 -13.62635 -13.48219 -13.10012 -13.05237 -13.03099 -12.90963 -12.71792 -12.56291 -12.34056 -12.26490 -12.16605 -11.93295 -11.45432 -11.33195 -11.06646 -10.89974 -10.65109 -10.39938 -9.92449 -8.42078 -7.84304 -5.42793 0.80081 0.91141 1.40057 1.46708 1.52887 1.53480 1.78734 2.50087 3.08259 3.20939 3.41768 3.51111 3.64460 3.67083 3.79856 4.12283 4.26415 4.27995 4.34130 4.40413 4.47621 4.53980 4.60360 4.65269 4.69029 4.73222 4.86649 4.95557 5.07827 5.18130 5.21614 5.36158 5.44386 5.57727 5.66858 5.74972 5.85416 6.44317 6.50231 7.17991 7.76610 7.87984 8.34918 9.13084 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.004341 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.953780 B = 6448.559023 C = 7243.787031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.374 3.626 3 O -0.498 6.498 4 C -0.182 4.182 5 C 0.120 3.880 6 N -0.288 5.288 7 C -0.041 4.041 8 C -0.028 4.028 9 C 0.222 3.778 10 N -0.555 5.555 11 C -0.257 4.257 12 H 0.038 0.962 13 C -0.014 4.014 14 N -0.908 5.908 15 Si 0.943 3.057 16 H -0.292 1.292 17 H -0.284 1.284 18 H -0.275 1.275 19 C 0.111 3.889 20 C -0.193 4.193 21 C -0.211 4.211 22 N -0.304 5.304 23 N -0.126 5.126 24 H 0.111 0.889 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.223 0.777 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 15.008 -4.665 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.252 3.748 3 O -0.375 6.375 4 C -0.220 4.220 5 C 0.000 4.000 6 N -0.083 5.083 7 C -0.193 4.193 8 C -0.169 4.169 9 C 0.094 3.906 10 N -0.271 5.271 11 C -0.388 4.388 12 H 0.056 0.944 13 C -0.213 4.213 14 N -0.552 5.552 15 Si 0.772 3.228 16 H -0.219 1.219 17 H -0.210 1.210 18 H -0.201 1.201 19 C 0.003 3.997 20 C -0.232 4.232 21 C -0.251 4.251 22 N -0.170 5.170 23 N -0.104 5.104 24 H 0.129 0.871 25 H 0.109 0.891 26 H 0.126 0.874 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.240 0.760 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.336 14.886 -3.431 20.279 hybrid contribution 0.698 -0.480 0.405 0.939 sum -12.638 14.406 -3.026 19.401 Atomic orbital electron populations 1.22293 0.90986 1.06188 1.06116 1.24740 0.93558 0.88250 0.68218 1.90449 1.72891 1.36097 1.38030 1.22444 0.92711 0.99399 1.07479 1.22086 0.91668 0.79350 1.06887 1.47561 1.27295 1.15299 1.18118 1.23797 0.96874 0.98050 1.00531 1.23565 1.00624 0.96828 0.95918 1.19191 0.80661 0.98361 0.92379 1.43410 1.12341 1.35197 1.36181 1.18740 1.34551 0.89034 0.96464 0.94393 1.25578 1.00180 0.97262 0.98249 1.69928 1.51170 1.08872 1.25188 0.85733 0.77864 0.77813 0.81396 1.21910 1.20996 1.20079 1.21456 0.90642 0.92434 0.95174 1.23047 0.94408 1.01060 1.04646 1.23249 1.06852 0.95629 0.99399 1.75069 1.06757 1.19945 1.15272 1.78074 1.21720 0.94535 1.16102 0.87091 0.89139 0.87439 0.85910 0.86677 0.88651 0.85176 0.76048 0.90911 0.90809 0.93603 0.86121 0.91556 0.87466 0.87419 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 10.25 71.24 0.73 -0.60 16 2 C 0.37 5.00 7.27 29.11 0.21 5.21 16 3 O -0.50 -10.38 16.72 -1.42 -0.02 -10.40 16 4 C -0.18 -2.63 5.75 29.85 0.17 -2.45 16 5 C 0.12 2.34 5.74 86.38 0.50 2.84 16 6 N -0.29 -8.59 3.44 -347.73 -1.20 -9.78 16 7 C -0.04 -1.28 11.50 83.49 0.96 -0.32 16 8 C -0.03 -1.20 6.83 41.59 0.28 -0.91 16 9 C 0.22 10.29 5.89 85.63 0.50 10.80 16 10 N -0.56 -27.43 2.76 -682.35 -1.89 -29.31 16 11 C -0.26 -14.54 8.04 84.03 0.68 -13.87 16 12 H 0.04 2.25 7.25 -2.91 -0.02 2.23 16 13 C -0.01 -0.82 4.97 84.86 0.42 -0.40 16 14 N -0.91 -53.16 11.45 21.65 0.25 -52.91 16 15 Si 0.94 47.67 29.60 68.60 2.03 49.70 16 16 H -0.29 -15.34 7.11 99.48 0.71 -14.64 16 17 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 C 0.11 4.49 6.61 44.99 0.30 4.79 16 20 C -0.19 -7.49 9.81 30.59 0.30 -7.19 16 21 C -0.21 -7.85 10.10 30.59 0.31 -7.54 16 22 N -0.30 -14.44 12.41 -48.60 -0.60 -15.05 16 23 N -0.13 -4.94 12.91 37.02 0.48 -4.46 16 24 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.11 0.33 8.12 -2.39 -0.02 0.31 16 27 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 1.79 8.12 -2.39 -0.02 1.77 16 29 H 0.10 1.96 8.10 -2.38 -0.02 1.94 16 30 H 0.13 1.92 8.03 -2.38 -0.02 1.90 16 31 H 0.22 4.74 8.06 -2.91 -0.02 4.71 16 32 H 0.07 2.88 8.03 -2.39 -0.02 2.86 16 33 H 0.07 4.06 5.52 -2.38 -0.01 4.05 16 34 H 0.25 14.48 8.32 -92.71 -0.77 13.71 16 35 H 0.12 4.07 8.10 -2.39 -0.02 4.05 16 36 H 0.07 3.03 6.95 -2.39 -0.02 3.01 16 37 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.05 2.21 8.02 -2.39 -0.02 2.19 16 Total: -1.00 -76.05 336.71 5.45 -70.59 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.04 Total: 11.28 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.36 Total: -9.66 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -2.96 Total: -111.52 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.02 Total: -10.40 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -76.05 5.45 -70.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906259588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.443 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds