Wall clock time and date at job start Fri Apr 10 2020 14:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.29107 * 126.00725 * 2 1 4 4 N 1.29024 * 110.25847 * 179.97438 * 3 2 1 5 5 C 1.32902 * 108.63624 * 359.96882 * 4 3 2 6 6 C 1.34402 * 126.00798 * 179.97438 * 2 1 3 7 7 C 1.50536 * 129.25115 * 0.22670 * 6 2 1 8 8 C 1.53438 * 108.32129 * 163.53847 * 7 6 2 9 9 H 1.08998 * 109.45940 * 289.69994 * 8 7 6 10 10 C 1.50701 * 109.45563 * 169.73302 * 8 7 6 11 11 O 1.21287 * 119.99912 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00162 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00357 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47557 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47362 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00138 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99635 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00032 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47105 * 90.00301 * 19 17 15 21 21 H 1.48498 * 109.47149 * 210.00197 * 19 17 15 22 22 H 1.48493 * 109.47374 * 330.00312 * 19 17 15 23 23 C 1.53104 * 109.54985 * 49.70806 * 8 7 6 24 24 C 1.50604 * 129.16582 * 180.22795 * 5 4 3 25 25 H 1.09005 * 109.46751 * 90.02261 * 1 2 3 26 26 H 1.08998 * 109.47110 * 210.02436 * 1 2 3 27 27 H 1.08997 * 109.47192 * 330.02523 * 1 2 3 28 28 H 1.08999 * 109.69098 * 283.24438 * 7 6 2 29 29 H 1.08996 * 109.69586 * 43.79030 * 7 6 2 30 30 H 0.97003 * 120.00132 * 359.97438 * 12 10 8 31 31 H 1.09004 * 109.46749 * 300.00269 * 13 12 10 32 32 H 1.08999 * 109.47190 * 59.99284 * 13 12 10 33 33 H 1.09003 * 109.46919 * 299.99788 * 14 13 12 34 34 H 1.09005 * 109.47109 * 59.99881 * 14 13 12 35 35 H 0.97001 * 119.99479 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.45705 * 49.95988 * 23 8 7 37 37 H 1.09003 * 109.45410 * 169.90991 * 23 8 7 38 38 H 1.08999 * 109.68710 * 43.70373 * 24 5 4 39 39 H 1.08993 * 109.72019 * 283.14774 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6331 0.0016 6 6 2.2551 -1.0872 0.0005 7 6 1.8721 -2.5430 -0.0035 8 6 3.1016 -3.3641 -0.4138 9 1 3.3151 -3.1954 -1.4693 10 6 2.8267 -4.8281 -0.1851 11 8 1.7559 -5.1815 0.2617 12 7 3.7710 -5.7446 -0.4759 13 6 3.5036 -7.1678 -0.2541 14 6 4.7294 -7.9869 -0.6630 15 6 4.4545 -9.4508 -0.4342 16 1 3.5010 -9.7655 -0.0364 17 6 5.4203 -10.3886 -0.7327 18 7 6.5815 -10.0053 -1.2165 19 14 5.0798 -12.2031 -0.4484 20 1 4.4823 -12.7925 -1.6735 21 1 6.3514 -12.9018 -0.1324 22 1 4.1349 -12.3575 0.6867 23 6 4.3080 -2.9345 0.4253 24 6 4.7468 -1.5243 0.0072 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 1.5480 -2.8403 0.9939 29 1 1.0645 -2.7085 -0.7165 30 1 4.6276 -5.4620 -0.8329 31 1 3.2886 -7.3368 0.8011 32 1 2.6460 -7.4740 -0.8531 33 1 4.9438 -7.8177 -1.7183 34 1 5.5872 -7.6807 -0.0642 35 1 7.2611 -10.6650 -1.4262 36 1 4.0346 -2.9339 1.4804 37 1 5.1296 -3.6323 0.2637 38 1 5.4788 -1.1430 0.7191 39 1 5.1856 -1.5543 -0.9901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323917531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:02 Heat of formation + Delta-G solvation = 13.970001 kcal Electronic energy + Delta-G solvation = -21076.713694 eV Core-core repulsion = 17826.567977 eV Total energy + Delta-G solvation = -3250.145717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.43342 -40.97669 -37.71692 -36.55477 -35.86176 -34.79171 -32.10045 -31.52328 -30.86637 -28.72515 -27.04066 -25.31754 -24.26810 -22.82203 -22.38805 -21.62567 -20.47400 -18.65492 -18.31040 -17.90058 -17.42256 -16.73626 -16.50520 -16.35233 -15.74055 -15.22561 -14.85477 -14.80986 -14.61019 -14.29026 -14.25364 -14.10834 -13.67653 -13.18280 -13.14223 -13.02673 -12.91356 -12.62400 -12.49125 -12.23042 -12.13593 -11.94832 -11.66125 -11.52193 -11.40950 -10.94484 -10.70830 -10.57775 -9.96085 -9.86453 -8.21874 -6.31633 0.52881 1.43168 1.43516 1.44271 1.47024 1.54951 1.67654 2.26226 2.46668 3.13340 3.17427 3.43803 3.72964 3.78065 3.78557 3.94595 4.13470 4.25771 4.29629 4.44610 4.50135 4.55156 4.57370 4.58365 4.68331 4.89785 4.91568 4.91799 5.03650 5.08888 5.20961 5.32266 5.35127 5.53672 5.61598 5.63811 5.82846 6.19828 6.67532 6.82327 7.31673 7.37722 7.44325 8.89745 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.043596 B = 0.002954 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.099657 B = 9475.129626 C =10007.627535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.277 5.277 3 N -0.128 5.128 4 N -0.298 5.298 5 C -0.032 4.032 6 C -0.013 4.013 7 C -0.017 4.017 8 C -0.092 4.092 9 H 0.125 0.875 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.714 5.714 13 C 0.140 3.860 14 C 0.022 3.978 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.107 4.107 24 C -0.026 4.026 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.412 0.588 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.265 0.735 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 18.148 1.154 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.105 5.105 4 N -0.162 5.162 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.057 4.057 8 C -0.113 4.113 9 H 0.143 0.857 10 C 0.304 3.696 11 O -0.467 6.467 12 N -0.365 5.365 13 C 0.017 3.983 14 C -0.016 4.016 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.145 4.145 24 C -0.065 4.065 25 H 0.129 0.871 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.532 19.435 1.414 21.693 hybrid contribution 0.164 -1.878 -0.097 1.888 sum -9.368 17.557 1.317 19.943 Atomic orbital electron populations 1.22745 0.70108 1.07624 1.06880 1.47199 1.10681 1.03861 1.45251 1.78486 0.96389 1.12411 1.23225 1.74737 1.10332 1.13323 1.17767 1.22209 0.96469 0.90991 1.07663 1.21981 0.91106 0.92654 1.09135 1.19865 0.97832 0.83634 1.04333 1.21295 0.96972 0.88883 1.04178 0.85748 1.20916 0.83345 0.88726 0.76637 1.90665 1.26202 1.82801 1.46987 1.46130 1.18485 1.06785 1.65093 1.21204 0.98618 0.79125 0.99383 1.19137 0.92612 0.93795 0.96027 1.21491 1.00772 0.92791 1.43399 0.92361 1.25831 0.94785 1.03821 0.94661 1.70048 1.06044 1.35727 1.44722 0.85498 0.77717 0.79338 0.78821 1.19871 1.20681 1.19081 1.21665 0.96630 0.96485 0.99745 1.20039 0.91731 0.90363 1.04383 0.87071 0.86329 0.86701 0.89008 0.88392 0.75187 0.93496 0.93536 0.97276 0.97139 0.92601 0.91112 0.88361 0.88645 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 11.27 127.77 1.44 2.02 16 2 N -0.28 -5.41 3.73 -356.42 -1.33 -6.74 16 3 N -0.13 -3.33 13.19 37.02 0.49 -2.84 16 4 N -0.30 -8.35 12.40 -48.99 -0.61 -8.96 16 5 C -0.03 -0.73 7.11 41.75 0.30 -0.43 16 6 C -0.01 -0.27 6.76 41.50 0.28 0.01 16 7 C -0.02 -0.31 4.68 29.94 0.14 -0.17 16 8 C -0.09 -1.71 2.50 -11.36 -0.03 -1.74 16 9 H 0.12 1.89 8.11 -2.39 -0.02 1.87 16 10 C 0.52 14.35 7.15 87.66 0.63 14.98 16 11 O -0.59 -20.73 15.82 -3.05 -0.05 -20.78 16 12 N -0.71 -21.45 5.37 -463.07 -2.49 -23.94 16 13 C 0.14 5.57 5.61 86.38 0.48 6.06 16 14 C 0.02 1.04 5.09 29.85 0.15 1.19 16 15 C -0.55 -29.50 9.11 25.60 0.23 -29.27 16 16 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 17 C 0.01 0.43 5.46 84.66 0.46 0.89 16 18 N -0.93 -53.00 13.29 21.45 0.28 -52.72 16 19 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 C -0.11 -1.75 5.18 30.80 0.16 -1.59 16 24 C -0.03 -0.43 6.30 29.98 0.19 -0.24 16 25 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.12 0.63 7.96 -2.39 -0.02 0.61 16 27 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 1.80 7.78 -2.39 -0.02 1.78 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.41 10.28 7.80 -92.71 -0.72 9.56 16 31 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 37 H 0.10 1.42 7.30 -2.39 -0.02 1.40 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -72.53 327.28 3.10 -69.43 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.34 Total: 10.21 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.44 Total: -8.31 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -3.65 Total: -95.19 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.53 3.10 -69.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323917531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.405 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds