Wall clock time and date at job start Fri Apr 10 2020 14:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40414 * 126.21194 * 2 1 4 4 C 1.31203 * 108.25259 * 180.02562 * 3 2 1 5 5 C 1.39273 * 107.85867 * 0.02562 * 4 3 2 6 6 C 1.34246 * 126.21117 * 179.97438 * 2 1 3 7 7 C 1.51907 * 127.70691 * 359.94342 * 6 2 1 8 8 C 1.53797 * 106.79991 * 244.00019 * 7 6 2 9 9 C 1.50950 * 110.73572 * 281.24981 * 8 7 6 10 10 N 1.44746 * 116.94957 * 72.63903 * 9 8 7 11 11 C 1.46899 * 110.93454 * 50.88063 * 10 9 8 12 12 C 1.50706 * 109.46951 * 167.74032 * 11 10 9 13 13 O 1.21291 * 120.00169 * 358.65395 * 12 11 10 14 14 N 1.34775 * 119.99694 * 178.65206 * 12 11 10 15 15 C 1.37097 * 119.99969 * 175.66681 * 14 12 11 16 16 H 1.07997 * 119.99908 * 5.13772 * 15 14 12 17 17 C 1.38953 * 120.00292 * 185.13447 * 15 14 12 18 18 N 1.31407 * 119.99706 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47592 * 89.99800 * 19 17 15 21 21 H 1.48503 * 109.47224 * 210.00047 * 19 17 15 22 22 H 1.48504 * 109.47252 * 329.99481 * 19 17 15 23 23 C 1.47505 * 112.86770 * 285.58915 * 10 9 8 24 24 H 1.09007 * 109.47020 * 264.75980 * 1 2 3 25 25 H 1.08999 * 109.47315 * 24.75504 * 1 2 3 26 26 H 1.08997 * 109.47608 * 144.76281 * 1 2 3 27 27 H 1.07996 * 126.07363 * 180.02562 * 4 3 2 28 28 H 1.08992 * 109.98451 * 3.32446 * 7 6 2 29 29 H 1.09003 * 109.98370 * 124.68281 * 7 6 2 30 30 H 1.09006 * 109.22121 * 41.57075 * 8 7 6 31 31 H 1.09000 * 109.22070 * 160.92294 * 8 7 6 32 32 H 1.08993 * 107.96968 * 194.51519 * 9 8 7 33 33 H 1.09002 * 107.96139 * 310.81690 * 9 8 7 34 34 H 1.08999 * 109.47148 * 287.73974 * 11 10 9 35 35 H 1.08997 * 109.46909 * 47.73913 * 11 10 9 36 36 H 0.97001 * 120.00402 * 355.67048 * 14 12 11 37 37 H 0.97001 * 120.00059 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.94638 * 321.48475 * 23 10 9 39 39 H 1.09004 * 109.94395 * 200.32850 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2945 1.1329 0.0000 4 6 3.5426 0.7284 -0.0006 5 6 3.5401 -0.6644 -0.0015 6 6 2.2580 -1.0832 0.0005 7 6 1.8372 -2.5428 0.0023 8 6 2.3353 -3.1473 1.3259 9 6 3.8103 -3.4590 1.2495 10 7 4.7206 -2.3339 1.2723 11 6 4.4216 -1.4397 2.3988 12 6 5.5519 -0.4585 2.5749 13 8 6.5230 -0.5156 1.8505 14 7 5.4835 0.4825 3.5374 15 6 6.5483 1.3178 3.7562 16 1 7.4087 1.2780 3.1047 17 6 6.5206 2.2158 4.8163 18 7 5.4735 2.2647 5.6087 19 14 7.9711 3.3544 5.1140 20 1 7.7704 4.6190 4.3619 21 1 8.0766 3.6528 6.5649 22 1 9.2198 2.6966 4.6519 23 6 4.7445 -1.5899 -0.0012 24 1 -0.3633 -0.0939 1.0234 25 1 -0.3634 0.9332 -0.4303 26 1 -0.3634 -0.8393 -0.5929 27 1 4.4166 1.3626 -0.0003 28 1 0.7514 -2.6175 -0.0561 29 1 2.2934 -3.0631 -0.8399 30 1 2.1600 -2.4365 2.1335 31 1 1.7845 -4.0654 1.5308 32 1 4.0602 -4.1101 2.0871 33 1 3.9889 -4.0159 0.3296 34 1 3.4979 -0.8974 2.1970 35 1 4.3061 -2.0281 3.3090 36 1 4.6809 0.5687 4.0753 37 1 5.4542 2.8912 6.3489 38 1 4.6790 -2.2843 -0.8387 39 1 5.6621 -1.0060 -0.0735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654719525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:51 Heat of formation + Delta-G solvation = 31.997868 kcal Electronic energy + Delta-G solvation = -22636.102624 eV Core-core repulsion = 19386.738654 eV Total energy + Delta-G solvation = -3249.363970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70020 -40.25756 -38.55054 -35.90363 -34.98565 -33.38657 -33.17877 -31.77964 -29.56248 -27.96448 -26.60174 -26.21659 -24.78067 -22.10734 -21.83954 -20.53695 -20.02886 -19.64054 -18.10807 -17.43290 -16.95957 -16.49405 -16.21920 -16.11534 -15.66194 -15.49091 -15.27367 -14.80272 -14.57648 -14.34498 -13.91865 -13.66003 -13.47429 -13.29064 -13.24054 -12.98170 -12.63340 -12.51416 -12.37293 -12.28604 -12.12098 -12.07011 -11.70843 -11.46957 -11.36052 -10.25289 -10.18303 -9.95365 -9.35198 -8.97473 -8.43048 -5.91320 0.87969 1.38438 1.40561 1.54018 1.64342 1.74552 2.13285 2.30881 2.99625 3.24269 3.48672 3.59045 3.67868 3.94197 4.03662 4.20243 4.28762 4.35687 4.38171 4.47419 4.51462 4.57424 4.61134 4.65011 4.77534 4.78676 4.90702 4.98220 5.14245 5.18098 5.31557 5.39471 5.43856 5.61326 5.95438 6.12287 6.19987 6.51420 6.65343 6.70086 7.17677 7.61750 8.18203 8.75057 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.005460 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.917782 B = 5127.016776 C = 5698.233515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.369 5.369 3 N -0.338 5.338 4 C 0.046 3.954 5 C -0.281 4.281 6 C 0.093 3.907 7 C -0.047 4.047 8 C -0.142 4.142 9 C 0.049 3.951 10 N -0.521 5.521 11 C 0.066 3.934 12 C 0.452 3.548 13 O -0.609 6.609 14 N -0.580 5.580 15 C -0.325 4.325 16 H 0.080 0.920 17 C -0.017 4.017 18 N -0.926 5.926 19 Si 0.992 3.008 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.271 1.271 23 C 0.141 3.859 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.158 0.842 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.389 0.611 37 H 0.275 0.725 38 H 0.096 0.904 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -12.061 -9.893 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.151 5.151 3 N -0.160 5.160 4 C -0.139 4.139 5 C -0.294 4.294 6 C -0.038 4.038 7 C -0.086 4.086 8 C -0.182 4.182 9 C -0.079 4.079 10 N -0.243 5.243 11 C -0.065 4.065 12 C 0.240 3.760 13 O -0.494 6.494 14 N -0.217 5.217 15 C -0.455 4.455 16 H 0.098 0.902 17 C -0.216 4.216 18 N -0.568 5.568 19 Si 0.816 3.184 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.195 1.195 23 C 0.013 3.987 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.175 0.825 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.222 0.778 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.937 -11.170 -10.138 20.537 hybrid contribution 0.270 1.082 0.645 1.288 sum -13.666 -10.089 -9.492 19.459 Atomic orbital electron populations 1.22208 0.72080 1.06050 1.04592 1.48625 1.07686 1.02906 1.55872 1.77528 1.01866 1.09227 1.27388 1.23591 0.94818 0.95924 0.99535 1.20754 0.96401 0.93943 1.18258 1.21541 0.90111 0.92472 0.99657 1.20965 1.03096 0.84706 0.99808 1.21864 0.97669 1.02505 0.96178 1.21542 0.89745 0.92265 1.04375 1.61365 1.50482 1.10114 1.02291 1.21598 0.94718 0.94242 0.95925 1.20710 0.89516 0.83459 0.82328 1.90441 1.36479 1.75057 1.47454 1.41920 1.16564 1.30443 1.32786 1.19649 0.98021 1.15410 1.12416 0.90217 1.26040 1.00840 0.99583 0.95147 1.69696 1.30575 1.38522 1.18018 0.84936 0.77811 0.77955 0.77691 1.19872 1.19616 1.19534 1.20906 0.93418 0.93538 0.90849 0.89813 0.89070 0.86235 0.82519 0.87595 0.87402 0.93583 0.86872 0.90655 0.89067 0.92770 0.88796 0.77800 0.91570 0.88555 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 11.13 127.77 1.42 2.85 16 2 N -0.37 -10.07 4.01 -355.54 -1.42 -11.49 16 3 N -0.34 -12.43 12.61 -57.22 -0.72 -13.15 16 4 C 0.05 1.76 11.96 85.04 1.02 2.78 16 5 C -0.28 -9.21 3.40 -20.01 -0.07 -9.28 16 6 C 0.09 2.38 5.51 41.80 0.23 2.61 16 7 C -0.05 -0.70 5.91 30.50 0.18 -0.52 16 8 C -0.14 -2.32 5.43 30.20 0.16 -2.15 16 9 C 0.05 1.04 5.02 86.04 0.43 1.47 16 10 N -0.52 -16.94 4.53 -911.19 -4.13 -21.07 16 11 C 0.07 2.52 4.15 85.56 0.35 2.87 16 12 C 0.45 22.70 7.49 87.66 0.66 23.36 16 13 O -0.61 -34.38 14.04 -3.06 -0.04 -34.43 16 14 N -0.58 -31.64 5.28 -306.98 -1.62 -33.26 16 15 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 16 H 0.08 4.98 7.17 -2.91 -0.02 4.96 16 17 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 18 N -0.93 -52.71 13.06 21.66 0.28 -52.42 16 19 Si 0.99 44.92 29.55 68.60 2.03 46.95 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.14 4.66 5.56 85.82 0.48 5.14 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.12 0.97 7.42 -2.39 -0.02 0.95 16 27 H 0.16 6.58 8.06 -2.91 -0.02 6.56 16 28 H 0.11 0.93 7.13 -2.39 -0.02 0.91 16 29 H 0.11 1.32 7.88 -2.39 -0.02 1.30 16 30 H 0.05 0.98 6.39 -2.38 -0.02 0.97 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.56 7.52 -2.39 -0.02 1.54 16 34 H 0.05 2.08 5.02 -2.39 -0.01 2.06 16 35 H 0.09 3.28 8.04 -2.39 -0.02 3.26 16 36 H 0.39 20.84 7.92 -92.71 -0.73 20.11 16 37 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.10 2.54 7.75 -2.39 -0.02 2.52 16 39 H 0.06 2.66 6.36 -2.38 -0.02 2.64 16 Total: -1.00 -76.51 312.64 0.86 -75.65 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.34 Total: 33.05 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.15 Total: 10.17 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -7.61 Total: -131.39 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.04 Total: -34.43 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.51 0.86 -75.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654719525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.643 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds