Wall clock time and date at job start Fri Apr 10 2020 14:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99932 * 2 1 4 4 H 1.07997 * 120.00030 * 159.56986 * 3 2 1 5 5 C 1.38812 * 119.99892 * 339.56412 * 3 2 1 6 6 N 1.31624 * 119.99989 * 347.20586 * 5 3 2 7 7 Si 1.86796 * 120.00088 * 167.20372 * 5 3 2 8 8 H 1.48498 * 109.47079 * 270.00042 * 7 5 3 9 9 H 1.48500 * 109.46968 * 29.99613 * 7 5 3 10 10 H 1.48499 * 109.47327 * 150.00156 * 7 5 3 11 11 C 1.46500 * 119.99867 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.39995 * 180.16917 * 11 2 1 13 13 C 1.53067 * 109.40444 * 300.00075 * 11 2 1 14 14 C 1.53344 * 108.42503 * 169.02960 * 13 11 2 15 15 C 1.52920 * 108.67515 * 292.46979 * 14 13 11 16 16 N 1.45752 * 110.48479 * 50.75402 * 15 14 13 17 17 C 1.40769 * 117.94600 * 160.92702 * 16 15 14 18 18 C 1.40253 * 126.08472 * 174.10816 * 17 16 15 19 19 N 1.30821 * 108.33806 * 179.97438 * 18 17 16 20 20 N 1.40072 * 108.37222 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.05712 * 179.97438 * 20 19 18 22 22 C 1.35761 * 126.07634 * 353.80123 * 17 16 15 23 23 C 1.33352 * 124.11076 * 340.92526 * 16 15 14 24 24 O 1.21307 * 118.24733 * 182.22415 * 23 16 15 25 25 H 1.09004 * 109.47239 * 87.77487 * 1 2 3 26 26 H 1.09000 * 109.47295 * 207.77378 * 1 2 3 27 27 H 1.09002 * 109.47583 * 327.77703 * 1 2 3 28 28 H 0.97002 * 120.00089 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.67730 * 288.76508 * 13 11 2 30 30 H 1.09003 * 109.67235 * 49.29802 * 13 11 2 31 31 H 1.09000 * 109.60578 * 52.22485 * 14 13 11 32 32 H 1.09002 * 109.60169 * 172.54970 * 14 13 11 33 33 H 1.09005 * 109.30165 * 171.06227 * 15 14 13 34 34 H 1.09005 * 109.30026 * 290.44003 * 15 14 13 35 35 H 1.08005 * 125.82736 * 0.02562 * 18 17 16 36 36 H 1.08997 * 109.46835 * 89.98055 * 21 20 19 37 37 H 1.08999 * 109.46929 * 209.98471 * 21 20 19 38 38 H 1.08998 * 109.46762 * 329.98059 * 21 20 19 39 39 H 1.07997 * 126.22045 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1787 1.2154 0.3265 5 6 1.5211 2.3502 -0.4197 6 7 0.3671 2.2849 -1.0493 7 14 2.3130 4.0098 -0.0910 8 1 1.8499 4.5280 1.2213 9 1 3.7900 3.8579 -0.0699 10 1 1.9285 4.9628 -1.1631 11 6 2.1975 -1.2687 0.0006 12 1 3.2689 -1.0683 0.0035 13 6 1.8265 -2.0695 1.2512 14 6 2.3805 -3.4912 1.0984 15 6 1.6229 -4.1933 -0.0293 16 7 1.6083 -3.3637 -1.2276 17 6 1.3303 -3.9876 -2.4585 18 6 1.1590 -3.3419 -3.6918 19 7 0.9164 -4.2501 -4.6016 20 7 0.9246 -5.5072 -3.9838 21 6 0.6954 -6.7943 -4.6448 22 6 1.1863 -5.3218 -2.6640 23 6 1.8416 -2.0508 -1.2311 24 8 1.7621 -1.4563 -2.2856 25 1 -0.3634 0.0399 -1.0269 26 1 -0.3634 -0.9093 0.4789 27 1 -0.3634 0.8694 0.5480 28 1 -0.0720 3.0984 -1.3430 29 1 2.2633 -1.5982 2.1317 30 1 0.7421 -2.1074 1.3545 31 1 3.4416 -3.4459 0.8532 32 1 2.2436 -4.0392 2.0306 33 1 2.1097 -5.1423 -0.2541 34 1 0.5981 -4.3841 0.2894 35 1 1.2181 -2.2769 -3.8614 36 1 1.6459 -7.1977 -4.9940 37 1 0.2429 -7.4901 -3.9383 38 1 0.0269 -6.6527 -5.4940 39 1 1.2644 -6.0951 -1.9142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159986319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:40 Heat of formation + Delta-G solvation = 94.159661 kcal Electronic energy + Delta-G solvation = -22435.001379 eV Core-core repulsion = 19188.332947 eV Total energy + Delta-G solvation = -3246.668432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20866 -39.53653 -36.03042 -35.66230 -33.33503 -32.35579 -30.77961 -29.06742 -28.09775 -26.45424 -25.99046 -24.31766 -22.47906 -21.72977 -20.63268 -20.08784 -18.22481 -17.21410 -16.79203 -15.83607 -15.67572 -15.54559 -15.07622 -14.54834 -13.87211 -13.82596 -13.71061 -13.47897 -12.98964 -12.80454 -12.62667 -12.56629 -12.45660 -12.07742 -11.45163 -11.25412 -11.02389 -10.80701 -10.67127 -10.50467 -10.44189 -10.33112 -9.90115 -9.85338 -9.71040 -9.14142 -8.82778 -8.47284 -7.29152 -6.79221 -5.69267 -3.14494 1.98489 2.59223 2.98333 3.38893 3.46602 3.48883 3.50314 3.67018 4.50887 4.63445 4.84818 4.94437 5.00102 5.06881 5.13955 5.26507 5.29793 5.45515 5.50007 5.62948 5.66502 5.84055 5.87684 5.91658 6.03126 6.09819 6.21816 6.45646 6.61764 6.64780 6.82744 7.12603 7.36797 7.42346 7.74558 7.85123 7.88547 8.04666 8.37820 8.94718 9.23622 9.84129 10.31292 11.35439 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.005079 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.945715 B = 5511.961301 C = 6252.962991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.567 5.567 3 C -0.259 4.259 4 H 0.073 0.927 5 C 0.007 3.993 6 N -0.898 5.898 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.279 1.279 10 H -0.291 1.291 11 C 0.171 3.829 12 H 0.094 0.906 13 C -0.137 4.137 14 C -0.131 4.131 15 C 0.118 3.882 16 N -0.533 5.533 17 C 0.014 3.986 18 C 0.057 3.943 19 N -0.296 5.296 20 N -0.386 5.386 21 C 0.113 3.887 22 C -0.003 4.003 23 C 0.489 3.511 24 O -0.514 6.514 25 H 0.029 0.971 26 H -0.004 1.004 27 H 0.055 0.945 28 H 0.253 0.747 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.214 0.786 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -19.096 2.393 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.287 5.287 3 C -0.389 4.389 4 H 0.091 0.909 5 C -0.192 4.192 6 N -0.542 5.542 7 Si 0.739 3.261 8 H -0.214 1.214 9 H -0.204 1.204 10 H -0.217 1.217 11 C 0.058 3.942 12 H 0.112 0.888 13 C -0.177 4.177 14 C -0.170 4.170 15 C -0.005 4.005 16 N -0.262 5.262 17 C -0.090 4.090 18 C -0.130 4.130 19 N -0.118 5.118 20 N -0.173 5.173 21 C -0.029 4.029 22 C -0.150 4.150 23 C 0.277 3.723 24 O -0.386 6.386 25 H 0.047 0.953 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.120 -18.838 0.548 18.879 hybrid contribution 0.434 0.780 0.899 1.267 sum 1.553 -18.058 1.447 18.183 Atomic orbital electron populations 1.20862 0.82032 0.96024 0.99390 1.43953 1.02026 0.99213 1.83503 1.19253 0.97393 0.84282 1.37941 0.90921 1.25063 0.97666 0.98581 0.97913 1.70121 1.17267 1.26863 1.39909 0.86194 0.78806 0.83804 0.77323 1.21448 1.20410 1.21710 1.20441 0.98233 0.86838 0.88718 0.88780 1.22245 1.01951 0.93556 0.99946 1.21858 1.00315 0.97255 0.97555 1.21367 1.00639 0.93639 0.84835 1.45184 1.68508 1.08148 1.04397 1.18106 1.11455 0.90867 0.88548 1.24988 0.98308 1.01070 0.88678 1.77377 1.24260 0.87875 1.22273 1.48171 1.57278 1.06260 1.05580 1.21686 1.02288 0.80304 0.98635 1.21776 1.09361 0.96246 0.87572 1.22694 0.76207 0.79709 0.93733 1.90487 1.49352 1.66827 1.31954 0.95283 0.98533 0.92622 0.93649 0.90667 0.91229 0.91100 0.90123 0.91383 0.91970 0.77031 0.91343 0.89989 0.89623 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 8.32 59.85 0.50 4.61 16 2 N -0.57 -14.41 2.57 -175.06 -0.45 -14.86 16 3 C -0.26 -7.19 9.62 -15.06 -0.14 -7.34 16 4 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 5 C 0.01 0.20 5.09 -17.43 -0.09 0.11 16 6 N -0.90 -26.98 10.56 55.49 0.59 -26.39 16 7 Si 0.91 22.14 29.57 -169.99 -5.03 17.11 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 C 0.17 3.52 2.79 -69.30 -0.19 3.33 16 12 H 0.09 1.93 7.84 -51.93 -0.41 1.52 16 13 C -0.14 -2.14 5.46 -26.52 -0.14 -2.28 16 14 C -0.13 -1.50 6.02 -26.59 -0.16 -1.66 16 15 C 0.12 1.42 5.96 -4.49 -0.03 1.39 16 16 N -0.53 -9.11 3.07 -114.85 -0.35 -9.47 16 17 C 0.01 0.25 6.54 -83.88 -0.55 -0.30 16 18 C 0.06 1.11 10.68 -17.23 -0.18 0.93 16 19 N -0.30 -5.33 12.56 30.70 0.39 -4.94 16 20 N -0.39 -5.40 4.04 -67.82 -0.27 -5.67 16 21 C 0.11 0.94 11.48 59.85 0.69 1.62 16 22 C 0.00 -0.04 10.61 -16.67 -0.18 -0.22 16 23 C 0.49 10.36 6.64 -11.87 -0.08 10.29 16 24 O -0.51 -13.08 13.30 5.53 0.07 -13.01 16 25 H 0.03 0.84 7.58 -51.93 -0.39 0.44 16 26 H 0.00 -0.08 6.28 -51.93 -0.33 -0.41 16 27 H 0.06 1.50 6.95 -51.93 -0.36 1.14 16 28 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.14 6.31 -51.93 -0.33 0.81 16 31 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.64 7.00 -51.93 -0.36 0.27 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.21 4.72 5.69 -52.48 -0.30 4.42 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.17 1.57 7.24 -52.49 -0.38 1.19 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -35.41 314.16 -6.24 -41.65 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.36 Total: 0.36 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.56 Total: 10.49 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.10 Total: -61.33 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.41 -6.24 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159986319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.810 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds