Wall clock time and date at job start Fri Apr 10 2020 14:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99932 * 2 1 4 4 H 1.07997 * 120.00030 * 159.56986 * 3 2 1 5 5 C 1.38812 * 119.99892 * 339.56412 * 3 2 1 6 6 N 1.31624 * 119.99989 * 347.20586 * 5 3 2 7 7 Si 1.86796 * 120.00088 * 167.20372 * 5 3 2 8 8 H 1.48498 * 109.47079 * 270.00042 * 7 5 3 9 9 H 1.48500 * 109.46968 * 29.99613 * 7 5 3 10 10 H 1.48499 * 109.47327 * 150.00156 * 7 5 3 11 11 C 1.46500 * 119.99867 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.39995 * 180.16917 * 11 2 1 13 13 C 1.53067 * 109.40444 * 300.00075 * 11 2 1 14 14 C 1.53344 * 108.42503 * 169.02960 * 13 11 2 15 15 C 1.52920 * 108.67515 * 292.46979 * 14 13 11 16 16 N 1.45752 * 110.48479 * 50.75402 * 15 14 13 17 17 C 1.40769 * 117.94600 * 160.92702 * 16 15 14 18 18 C 1.40253 * 126.08472 * 174.10816 * 17 16 15 19 19 N 1.30821 * 108.33806 * 179.97438 * 18 17 16 20 20 N 1.40072 * 108.37222 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.05712 * 179.97438 * 20 19 18 22 22 C 1.35761 * 126.07634 * 353.80123 * 17 16 15 23 23 C 1.33352 * 124.11076 * 340.92526 * 16 15 14 24 24 O 1.21307 * 118.24733 * 182.22415 * 23 16 15 25 25 H 1.09004 * 109.47239 * 87.77487 * 1 2 3 26 26 H 1.09000 * 109.47295 * 207.77378 * 1 2 3 27 27 H 1.09002 * 109.47583 * 327.77703 * 1 2 3 28 28 H 0.97002 * 120.00089 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.67730 * 288.76508 * 13 11 2 30 30 H 1.09003 * 109.67235 * 49.29802 * 13 11 2 31 31 H 1.09000 * 109.60578 * 52.22485 * 14 13 11 32 32 H 1.09002 * 109.60169 * 172.54970 * 14 13 11 33 33 H 1.09005 * 109.30165 * 171.06227 * 15 14 13 34 34 H 1.09005 * 109.30026 * 290.44003 * 15 14 13 35 35 H 1.08005 * 125.82736 * 0.02562 * 18 17 16 36 36 H 1.08997 * 109.46835 * 89.98055 * 21 20 19 37 37 H 1.08999 * 109.46929 * 209.98471 * 21 20 19 38 38 H 1.08998 * 109.46762 * 329.98059 * 21 20 19 39 39 H 1.07997 * 126.22045 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1787 1.2154 0.3265 5 6 1.5211 2.3502 -0.4197 6 7 0.3671 2.2849 -1.0493 7 14 2.3130 4.0098 -0.0910 8 1 1.8499 4.5280 1.2213 9 1 3.7900 3.8579 -0.0699 10 1 1.9285 4.9628 -1.1631 11 6 2.1975 -1.2687 0.0006 12 1 3.2689 -1.0683 0.0035 13 6 1.8265 -2.0695 1.2512 14 6 2.3805 -3.4912 1.0984 15 6 1.6229 -4.1933 -0.0293 16 7 1.6083 -3.3637 -1.2276 17 6 1.3303 -3.9876 -2.4585 18 6 1.1590 -3.3419 -3.6918 19 7 0.9164 -4.2501 -4.6016 20 7 0.9246 -5.5072 -3.9838 21 6 0.6954 -6.7943 -4.6448 22 6 1.1863 -5.3218 -2.6640 23 6 1.8416 -2.0508 -1.2311 24 8 1.7621 -1.4563 -2.2856 25 1 -0.3634 0.0399 -1.0269 26 1 -0.3634 -0.9093 0.4789 27 1 -0.3634 0.8694 0.5480 28 1 -0.0720 3.0984 -1.3430 29 1 2.2633 -1.5982 2.1317 30 1 0.7421 -2.1074 1.3545 31 1 3.4416 -3.4459 0.8532 32 1 2.2436 -4.0392 2.0306 33 1 2.1097 -5.1423 -0.2541 34 1 0.5981 -4.3841 0.2894 35 1 1.2181 -2.2769 -3.8614 36 1 1.6459 -7.1977 -4.9940 37 1 0.2429 -7.4901 -3.9383 38 1 0.0269 -6.6527 -5.4940 39 1 1.2644 -6.0951 -1.9142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159986319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:40 Heat of formation + Delta-G solvation = 68.481705 kcal Electronic energy + Delta-G solvation = -22436.114859 eV Core-core repulsion = 19188.332947 eV Total energy + Delta-G solvation = -3247.781912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48852 -40.94926 -37.60779 -37.28370 -34.76082 -33.65683 -32.52379 -30.26947 -29.61095 -28.09736 -27.46029 -25.78638 -23.89048 -23.31480 -21.91420 -21.36136 -19.54325 -18.90989 -18.33532 -17.35034 -17.13418 -16.82866 -16.46086 -15.98060 -15.49578 -15.10490 -15.07416 -14.98713 -14.35372 -14.31054 -13.94139 -13.80548 -13.48429 -13.40043 -13.06780 -12.92863 -12.64108 -12.39064 -12.27779 -12.17633 -12.12926 -11.80453 -11.65431 -11.59187 -10.94094 -10.68024 -10.37681 -10.30789 -8.85308 -8.54396 -7.83338 -5.31454 0.81141 1.44145 1.47573 1.50119 1.57431 1.58339 2.16588 2.24151 2.52645 3.31757 3.56189 3.67822 3.90149 3.95235 4.01540 4.09806 4.25947 4.36513 4.50314 4.51006 4.65042 4.70078 4.72106 4.73592 4.80474 4.82333 5.01938 5.16869 5.20391 5.27820 5.33114 5.49742 5.59193 5.68421 5.92857 6.20184 6.26105 6.54853 6.73584 7.09822 7.43737 7.81636 8.23624 9.20728 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.005079 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.945715 B = 5511.961301 C = 6252.962991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.586 5.586 3 C -0.266 4.266 4 H 0.081 0.919 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.977 3.023 8 H -0.278 1.278 9 H -0.266 1.266 10 H -0.300 1.300 11 C 0.163 3.837 12 H 0.088 0.912 13 C -0.126 4.126 14 C -0.120 4.120 15 C 0.104 3.896 16 N -0.523 5.523 17 C -0.027 4.027 18 C 0.021 3.979 19 N -0.327 5.327 20 N -0.374 5.374 21 C 0.098 3.902 22 C 0.042 3.958 23 C 0.482 3.518 24 O -0.575 6.575 25 H -0.019 1.019 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.246 0.754 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.170 0.830 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 -23.607 4.668 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.307 5.307 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.804 3.196 8 H -0.204 1.204 9 H -0.191 1.191 10 H -0.228 1.228 11 C 0.051 3.949 12 H 0.106 0.894 13 C -0.165 4.165 14 C -0.158 4.158 15 C -0.016 4.016 16 N -0.251 5.251 17 C -0.131 4.131 18 C -0.164 4.164 19 N -0.151 5.151 20 N -0.160 5.160 21 C -0.041 4.041 22 C -0.107 4.107 23 C 0.270 3.730 24 O -0.453 6.453 25 H -0.001 1.001 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.186 0.814 36 H 0.107 0.893 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.116 -23.457 2.847 23.724 hybrid contribution 0.152 1.879 0.113 1.888 sum 2.268 -21.578 2.960 21.898 Atomic orbital electron populations 1.20442 0.82724 0.96424 0.96363 1.44095 1.01945 1.00571 1.84097 1.19688 0.97678 0.85588 1.36633 0.90164 1.25924 0.98437 1.02313 0.98357 1.70338 1.19105 1.27105 1.42001 0.85126 0.78426 0.79077 0.76941 1.20399 1.19055 1.22751 1.20737 0.97436 0.85808 0.90888 0.89408 1.22105 1.01733 0.95771 0.96885 1.21884 1.00141 0.94327 0.99480 1.21889 1.02486 0.94394 0.82832 1.44997 1.66725 1.07129 1.06204 1.18287 1.14684 0.92373 0.87741 1.24466 1.00890 0.99972 0.91070 1.77290 1.25554 0.89601 1.22668 1.48769 1.54521 1.06543 1.06139 1.22242 1.03913 0.78171 0.99810 1.22545 1.04613 0.95531 0.88019 1.22470 0.76354 0.81411 0.92779 1.90508 1.52269 1.68693 1.33791 1.00091 0.95143 0.94994 0.94463 0.89902 0.91921 0.90565 0.85562 0.87049 0.90228 0.81378 0.89316 0.85717 0.89577 0.75382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.96 8.32 127.77 1.06 11.02 16 2 N -0.59 -30.98 2.57 -707.78 -1.82 -32.79 16 3 C -0.27 -15.30 9.62 84.03 0.81 -14.49 16 4 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 5 C -0.06 -3.28 5.09 84.86 0.43 -2.85 16 6 N -0.94 -60.02 10.56 21.65 0.23 -59.79 16 7 Si 0.98 47.18 29.57 68.60 2.03 49.21 16 8 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 11 C 0.16 6.79 2.79 44.10 0.12 6.91 16 12 H 0.09 3.68 7.84 -2.39 -0.02 3.66 16 13 C -0.13 -3.62 5.46 30.73 0.17 -3.45 16 14 C -0.12 -2.15 6.02 30.68 0.18 -1.96 16 15 C 0.10 1.98 5.96 86.49 0.52 2.50 16 16 N -0.52 -17.13 3.07 -636.46 -1.95 -19.08 16 17 C -0.03 -0.92 6.54 37.62 0.25 -0.67 16 18 C 0.02 0.88 10.68 85.33 0.91 1.79 16 19 N -0.33 -11.94 12.56 -56.77 -0.71 -12.65 16 20 N -0.37 -9.27 4.04 -368.48 -1.49 -10.76 16 21 C 0.10 1.18 11.48 127.77 1.47 2.64 16 22 C 0.04 0.93 10.61 83.50 0.89 1.82 16 23 C 0.48 21.06 6.64 87.71 0.58 21.65 16 24 O -0.57 -31.77 13.30 -3.11 -0.04 -31.81 16 25 H -0.02 -1.21 7.58 -2.39 -0.02 -1.23 16 26 H 0.03 1.38 6.28 -2.39 -0.01 1.36 16 27 H 0.03 1.81 6.95 -2.39 -0.02 1.79 16 28 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.90 6.31 -2.39 -0.02 1.88 16 31 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 32 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.23 7.00 -2.38 -0.02 1.21 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.17 8.50 5.69 -2.91 -0.02 8.48 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.23 2.29 7.24 -2.91 -0.02 2.27 16 Total: -1.00 -88.44 314.16 4.69 -83.75 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.05 Total: 9.03 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 7.39 Total: 24.90 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -5.74 Total: -135.07 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.04 Total: -31.81 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -88.44 4.69 -83.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159986319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.231 kcal (2) G-P(sol) polarization free energy of solvation -88.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds