Wall clock time and date at job start Fri Apr 10 2020 14:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99932 * 2 1 4 4 C 1.50694 * 109.47066 * 293.95260 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.46907 * 111.00071 * 123.95245 * 2 1 3 13 13 H 1.08993 * 110.43201 * 295.34945 * 12 2 1 14 14 C 1.54630 * 110.48521 * 57.88810 * 12 2 1 15 15 C 1.54688 * 101.66729 * 143.39416 * 14 12 2 16 16 N 1.46759 * 105.53761 * 334.74157 * 15 14 12 17 17 C 1.40759 * 124.35332 * 196.90519 * 16 15 14 18 18 C 1.40255 * 126.07499 * 0.06780 * 17 16 15 19 19 N 1.30837 * 108.33349 * 179.97438 * 18 17 16 20 20 N 1.40065 * 108.36713 * 0.02562 * 19 18 17 21 21 C 1.46505 * 126.05228 * 179.97438 * 20 19 18 22 22 C 1.35756 * 126.08552 * 179.76479 * 17 16 15 23 23 C 1.34420 * 111.29752 * 16.92107 * 16 15 14 24 24 O 1.21310 * 124.93941 * 179.55700 * 23 16 15 25 25 H 1.09004 * 109.46699 * 60.00180 * 1 2 3 26 26 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47502 * 300.00034 * 1 2 3 28 28 H 1.09007 * 109.47052 * 173.94945 * 3 2 1 29 29 H 1.09003 * 109.46808 * 53.95638 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 110.96999 * 261.60046 * 14 12 2 32 32 H 1.09002 * 110.96869 * 25.35541 * 14 12 2 33 33 H 1.08996 * 110.29277 * 215.67739 * 15 14 12 34 34 H 1.08999 * 110.21081 * 93.76109 * 15 14 12 35 35 H 1.08004 * 125.83683 * 359.94718 * 18 17 16 36 36 H 1.09003 * 109.46623 * 90.02302 * 21 20 19 37 37 H 1.09002 * 109.47366 * 210.02346 * 21 20 19 38 38 H 1.08998 * 109.46921 * 330.02263 * 21 20 19 39 39 H 1.07996 * 126.21308 * 0.02720 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3492 -1.5289 7 7 2.7128 4.0016 -0.6153 8 14 1.5839 4.1864 -3.1387 9 1 2.1159 5.5729 -3.1386 10 1 2.1757 3.4287 -4.2703 11 1 0.1067 4.2236 -3.2865 12 6 1.9954 -0.7660 1.1376 13 1 1.7236 -0.2863 2.0778 14 6 1.4705 -2.2200 1.1004 15 6 2.6981 -3.0090 1.6135 16 7 3.8626 -2.1740 1.2965 17 6 5.1910 -2.6390 1.2742 18 6 5.6120 -3.9494 1.5441 19 7 6.9140 -3.9963 1.4242 20 7 7.3713 -2.7194 1.0746 21 6 8.7665 -2.3365 0.8438 22 6 6.2920 -1.9004 0.9821 23 6 3.4977 -0.9079 1.0306 24 8 4.2620 -0.0096 0.7468 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.0797 1.3444 0.1083 29 1 1.5610 1.9273 0.8310 30 1 2.9880 4.9175 -0.7776 31 1 0.6176 -2.3440 1.7677 32 1 1.2142 -2.5162 0.0832 33 1 2.7716 -3.9686 1.1018 34 1 2.6249 -3.1610 2.6903 35 1 4.9710 -4.7781 1.8064 36 1 9.0126 -2.4779 -0.2086 37 1 8.9049 -1.2890 1.1117 38 1 9.4198 -2.9576 1.4564 39 1 6.3069 -0.8514 0.7256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177185817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:56 Heat of formation + Delta-G solvation = 45.380530 kcal Electronic energy + Delta-G solvation = -21905.036952 eV Core-core repulsion = 18656.253298 eV Total energy + Delta-G solvation = -3248.783654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.48218 -41.22282 -37.84179 -37.44233 -34.79330 -34.06434 -32.55659 -30.02546 -28.99374 -28.63135 -27.37826 -26.09217 -23.40884 -23.23705 -22.20483 -21.18600 -20.21241 -18.64548 -18.36315 -17.83440 -16.97228 -16.77156 -16.50887 -16.09288 -15.47607 -15.41855 -15.15927 -14.91931 -14.65687 -14.16688 -13.93640 -13.84036 -13.71172 -13.49036 -13.35697 -13.14896 -12.91154 -12.69364 -12.35373 -12.25013 -12.14554 -12.05140 -11.90594 -11.23618 -11.12033 -10.70526 -10.43825 -10.31531 -9.07049 -8.63372 -8.15912 -6.25416 0.71549 1.25379 1.38379 1.39040 1.43474 1.50847 2.02009 2.15377 2.41468 3.16230 3.27212 3.35834 3.66178 3.72031 3.93357 4.11306 4.22733 4.26183 4.39604 4.45795 4.55916 4.63666 4.64163 4.68250 4.74270 4.80221 5.02094 5.12471 5.19397 5.20972 5.26837 5.50802 5.65565 5.83481 6.00381 6.04476 6.14278 6.36054 6.59286 6.62031 6.90171 7.21962 7.41902 8.95669 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.004907 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.569029 B = 5704.493116 C = 6858.626826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.533 5.533 3 C 0.185 3.815 4 C -0.522 4.522 5 H 0.063 0.937 6 C -0.004 4.004 7 N -0.937 5.937 8 Si 0.971 3.029 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.262 1.262 12 C 0.046 3.954 13 H 0.067 0.933 14 C -0.109 4.109 15 C 0.103 3.897 16 N -0.535 5.535 17 C -0.003 4.003 18 C 0.049 3.951 19 N -0.299 5.299 20 N -0.376 5.376 21 C 0.098 3.902 22 C 0.014 3.986 23 C 0.507 3.493 24 O -0.551 6.551 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.012 0.988 28 H 0.040 0.960 29 H -0.050 1.050 30 H 0.262 0.738 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.226 0.774 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -19.216 6.245 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C 0.058 3.942 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.201 4.201 7 N -0.578 5.578 8 Si 0.795 3.205 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.186 1.186 12 C -0.067 4.067 13 H 0.084 0.916 14 C -0.147 4.147 15 C -0.017 4.017 16 N -0.262 5.262 17 C -0.106 4.106 18 C -0.138 4.138 19 N -0.122 5.122 20 N -0.162 5.162 21 C -0.042 4.042 22 C -0.133 4.133 23 C 0.295 3.705 24 O -0.427 6.427 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.031 0.969 28 H 0.058 0.942 29 H -0.032 1.032 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.242 0.758 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.290 -19.506 5.754 20.785 hybrid contribution -0.789 2.345 -0.031 2.474 sum 3.501 -17.161 5.723 18.426 Atomic orbital electron populations 1.22307 0.86149 1.02232 1.00144 1.62107 1.08952 1.15665 1.39127 1.19817 0.96879 0.83151 0.94304 1.21466 1.34603 0.97511 1.02433 0.91879 1.25974 0.95143 0.98206 1.00795 1.70143 1.39520 1.11692 1.36415 0.85421 0.79041 0.77046 0.78981 1.20914 1.19626 1.18623 1.22348 0.91145 0.98544 0.94617 0.91561 1.22857 0.98316 0.88632 1.04867 1.22579 0.81285 0.94869 1.03010 1.45288 1.04762 1.10115 1.65987 1.17865 0.84056 0.94632 1.14050 1.24114 0.92219 0.95852 1.01631 1.77167 1.12215 1.00724 1.22046 1.48612 1.07533 1.05909 1.54144 1.22171 0.75286 1.02865 1.03897 1.22454 0.87220 0.98125 1.05527 1.21341 0.91931 0.81788 0.75395 1.90630 1.59631 1.44231 1.48242 0.92554 0.88304 0.96923 0.94175 1.03224 0.92982 0.85385 0.88581 0.86662 0.87690 0.75752 0.89622 0.88355 0.87521 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 9.13 127.69 1.17 2.59 16 2 N -0.53 -23.54 4.60 -901.65 -4.15 -27.69 16 3 C 0.18 10.67 4.58 85.55 0.39 11.07 16 4 C -0.52 -31.54 8.51 25.60 0.22 -31.32 16 5 H 0.06 3.67 7.10 -2.91 -0.02 3.65 16 6 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 7 N -0.94 -60.69 13.29 21.45 0.28 -60.40 16 8 Si 0.97 46.65 29.54 68.60 2.03 48.68 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 12 C 0.05 1.61 2.65 44.91 0.12 1.73 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.11 -2.21 5.47 31.72 0.17 -2.03 16 15 C 0.10 1.79 6.93 86.91 0.60 2.39 16 16 N -0.53 -15.94 3.16 -627.99 -1.99 -17.93 16 17 C 0.00 -0.10 6.80 37.62 0.26 0.16 16 18 C 0.05 1.13 11.53 85.33 0.98 2.12 16 19 N -0.30 -7.84 12.56 -56.76 -0.71 -8.55 16 20 N -0.38 -10.08 4.04 -368.47 -1.49 -11.57 16 21 C 0.10 1.69 11.48 127.77 1.47 3.16 16 22 C 0.01 0.46 10.69 83.50 0.89 1.36 16 23 C 0.51 20.44 7.54 87.90 0.66 21.10 16 24 O -0.55 -28.31 12.74 -3.12 -0.04 -28.35 16 25 H 0.06 2.26 6.86 -2.38 -0.02 2.24 16 26 H 0.10 2.55 6.73 -2.39 -0.02 2.53 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 28 H 0.04 2.63 5.00 -2.38 -0.01 2.62 16 29 H -0.05 -3.14 8.12 -2.39 -0.02 -3.16 16 30 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.98 7.75 -2.39 -0.02 1.96 16 33 H 0.12 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.17 6.24 6.51 -2.91 -0.02 6.22 16 Total: -1.00 -86.17 321.58 2.38 -83.78 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.05 Total: 9.50 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 7.40 Total: 12.54 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -8.05 Total: -126.15 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.04 Total: -28.35 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -86.17 2.38 -83.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177185817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.163 kcal (2) G-P(sol) polarization free energy of solvation -86.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds